Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02865

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02855 and AO353_02860 are separated by 3 nucleotidesAO353_02860 and AO353_02865 are separated by 249 nucleotidesAO353_02865 and AO353_02870 are separated by 45 nucleotides AO353_02855: AO353_02855 - flagellar basal-body rod protein FlgC, at 608,067 to 608,510 _02855 AO353_02860: AO353_02860 - flagellar biosynthesis protein FlgB, at 608,514 to 608,921 _02860 AO353_02865: AO353_02865 - chemotaxis protein, at 609,171 to 609,998 _02865 AO353_02870: AO353_02870 - chemotaxis protein CheW, at 610,044 to 610,976 _02870 Position (kb) 609 610Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 608.195 kb on - strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.197 kb on + strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.198 kb on - strand, within AO353_02855at 608.203 kb on + strand, within AO353_02855at 608.203 kb on + strand, within AO353_02855at 608.204 kb on - strand, within AO353_02855at 608.204 kb on - strand, within AO353_02855at 608.272 kb on - strand, within AO353_02855at 608.281 kb on - strand, within AO353_02855at 608.281 kb on - strand, within AO353_02855at 608.281 kb on - strand, within AO353_02855at 608.281 kb on - strand, within AO353_02855at 608.281 kb on - strand, within AO353_02855at 608.386 kb on + strand, within AO353_02855at 608.387 kb on - strand, within AO353_02855at 608.387 kb on - strand, within AO353_02855at 608.387 kb on - strand, within AO353_02855at 608.387 kb on - strand, within AO353_02855at 608.433 kb on - strand, within AO353_02855at 608.493 kb on + strandat 608.493 kb on + strandat 608.493 kb on + strandat 608.493 kb on + strandat 608.494 kb on - strandat 608.494 kb on - strandat 608.494 kb on - strandat 608.494 kb on - strandat 608.494 kb on - strandat 608.515 kb on + strandat 608.515 kb on + strandat 608.515 kb on + strandat 608.515 kb on + strandat 608.515 kb on + strandat 608.515 kb on + strandat 608.515 kb on + strandat 608.515 kb on + strandat 608.516 kb on - strandat 608.516 kb on - strandat 608.516 kb on - strandat 608.516 kb on - strandat 608.516 kb on - strandat 608.535 kb on + strandat 608.602 kb on + strand, within AO353_02860at 608.602 kb on + strand, within AO353_02860at 608.603 kb on - strandat 608.603 kb on - strand, within AO353_02860at 608.603 kb on - strand, within AO353_02860at 608.669 kb on - strand, within AO353_02860at 608.697 kb on - strand, within AO353_02860at 608.697 kb on - strand, within AO353_02860at 608.697 kb on - strand, within AO353_02860at 608.697 kb on - strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.809 kb on + strand, within AO353_02860at 608.810 kb on - strand, within AO353_02860at 608.810 kb on - strand, within AO353_02860at 608.810 kb on - strand, within AO353_02860at 608.810 kb on - strand, within AO353_02860at 608.963 kb on - strandat 608.964 kb on + strandat 608.965 kb on - strandat 608.965 kb on - strandat 608.965 kb on - strandat 608.997 kb on - strandat 609.099 kb on + strandat 609.100 kb on - strandat 609.100 kb on - strandat 609.184 kb on + strandat 609.184 kb on + strandat 609.184 kb on + strandat 609.184 kb on + strandat 609.185 kb on - strandat 609.185 kb on - strandat 609.185 kb on - strandat 609.185 kb on - strandat 609.185 kb on - strandat 609.265 kb on + strand, within AO353_02865at 609.331 kb on + strand, within AO353_02865at 609.331 kb on + strand, within AO353_02865at 609.331 kb on + strand, within AO353_02865at 609.331 kb on + strand, within AO353_02865at 609.331 kb on + strand, within AO353_02865at 609.331 kb on + strand, within AO353_02865at 609.332 kb on - strand, within AO353_02865at 609.332 kb on - strand, within AO353_02865at 609.332 kb on - strand, within AO353_02865at 609.332 kb on - strand, within AO353_02865at 609.332 kb on - strand, within AO353_02865at 609.332 kb on - strand, within AO353_02865at 609.332 kb on - strand, within AO353_02865at 609.339 kb on + strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.340 kb on - strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.382 kb on + strand, within AO353_02865at 609.383 kb on - strand, within AO353_02865at 609.383 kb on - strand, within AO353_02865at 609.472 kb on + strand, within AO353_02865at 609.472 kb on + strand, within AO353_02865at 609.473 kb on - strand, within AO353_02865at 609.473 kb on - strand, within AO353_02865at 609.523 kb on + strand, within AO353_02865at 609.524 kb on - strand, within AO353_02865at 609.524 kb on - strand, within AO353_02865at 609.605 kb on + strand, within AO353_02865at 609.646 kb on + strand, within AO353_02865at 609.754 kb on + strand, within AO353_02865at 609.754 kb on + strand, within AO353_02865at 609.755 kb on - strand, within AO353_02865at 609.755 kb on - strand, within AO353_02865at 609.913 kb on + strand, within AO353_02865at 609.913 kb on + strand, within AO353_02865at 609.913 kb on + strand, within AO353_02865at 609.913 kb on + strand, within AO353_02865at 609.913 kb on + strand, within AO353_02865at 609.913 kb on + strand, within AO353_02865at 609.914 kb on - strand, within AO353_02865at 609.914 kb on - strand, within AO353_02865at 609.914 kb on - strand, within AO353_02865at 609.914 kb on - strand, within AO353_02865at 609.914 kb on - strand, within AO353_02865at 609.914 kb on - strand, within AO353_02865at 609.914 kb on - strand, within AO353_02865at 609.986 kb on + strandat 609.992 kb on + strandat 610.012 kb on + strandat 610.012 kb on + strandat 610.013 kb on - strandat 610.013 kb on - strandat 610.013 kb on - strandat 610.045 kb on + strandat 610.046 kb on - strandat 610.053 kb on - strandat 610.053 kb on - strandat 610.053 kb on - strandat 610.158 kb on + strand, within AO353_02870at 610.158 kb on + strand, within AO353_02870at 610.158 kb on + strand, within AO353_02870at 610.158 kb on + strand, within AO353_02870at 610.158 kb on + strand, within AO353_02870at 610.158 kb on + strand, within AO353_02870at 610.159 kb on - strand, within AO353_02870at 610.159 kb on - strand, within AO353_02870at 610.159 kb on - strandat 610.159 kb on - strand, within AO353_02870at 610.159 kb on - strand, within AO353_02870at 610.159 kb on - strand, within AO353_02870at 610.175 kb on + strand, within AO353_02870at 610.175 kb on + strand, within AO353_02870at 610.175 kb on + strand, within AO353_02870at 610.175 kb on + strand, within AO353_02870at 610.175 kb on + strand, within AO353_02870at 610.175 kb on + strand, within AO353_02870at 610.175 kb on + strand, within AO353_02870at 610.175 kb on + strand, within AO353_02870at 610.175 kb on + strand, within AO353_02870at 610.175 kb on + strand, within AO353_02870at 610.175 kb on + strand, within AO353_02870at 610.175 kb on + strand, within AO353_02870at 610.176 kb on - strand, within AO353_02870at 610.176 kb on - strand, within AO353_02870at 610.176 kb on - strand, within AO353_02870at 610.176 kb on - strand, within AO353_02870at 610.176 kb on - strand, within AO353_02870at 610.176 kb on - strand, within AO353_02870at 610.176 kb on - strand, within AO353_02870at 610.176 kb on - strand, within AO353_02870at 610.176 kb on - strand, within AO353_02870at 610.229 kb on + strand, within AO353_02870at 610.229 kb on + strand, within AO353_02870at 610.229 kb on + strand, within AO353_02870at 610.230 kb on - strand, within AO353_02870at 610.237 kb on + strand, within AO353_02870at 610.238 kb on - strandat 610.328 kb on - strand, within AO353_02870at 610.328 kb on - strand, within AO353_02870at 610.328 kb on - strand, within AO353_02870at 610.328 kb on - strand, within AO353_02870at 610.583 kb on - strand, within AO353_02870at 610.583 kb on - strand, within AO353_02870at 610.583 kb on - strand, within AO353_02870at 610.687 kb on + strand, within AO353_02870at 610.687 kb on + strand, within AO353_02870at 610.687 kb on + strand, within AO353_02870at 610.688 kb on - strand, within AO353_02870at 610.688 kb on - strand, within AO353_02870at 610.688 kb on - strand, within AO353_02870at 610.688 kb on - strand, within AO353_02870at 610.784 kb on + strand, within AO353_02870at 610.784 kb on + strand, within AO353_02870at 610.879 kb on + strand, within AO353_02870at 610.932 kb on + strandat 610.965 kb on + strandat 610.965 kb on + strandat 610.966 kb on - strandat 610.966 kb on - strandat 610.966 kb on - strandat 610.988 kb on + strandat 610.989 kb on - strandat 610.989 kb on - strandat 610.989 kb on - strandat 610.989 kb on - strandat 610.989 kb on - strandat 610.989 kb on - strandat 610.989 kb on - strandat 610.989 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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608,195 - AO353_02855 0.29 +0.4
608,197 + AO353_02855 0.29 -0.8
608,197 + AO353_02855 0.29 +1.1
608,197 + AO353_02855 0.29 +1.8
608,197 + AO353_02855 0.29 -0.3
608,197 + AO353_02855 0.29 -1.0
608,197 + AO353_02855 0.29 -0.5
608,197 + AO353_02855 0.29 -1.0
608,197 + AO353_02855 0.29 -0.4
608,198 - AO353_02855 0.30 -0.4
608,198 - AO353_02855 0.30 -2.1
608,198 - AO353_02855 0.30 +4.8
608,198 - AO353_02855 0.30 -0.6
608,198 - AO353_02855 0.30 -1.7
608,198 - AO353_02855 0.30 +1.4
608,198 - AO353_02855 0.30 +0.5
608,198 - AO353_02855 0.30 -0.7
608,203 + AO353_02855 0.31 -1.3
608,203 + AO353_02855 0.31 -0.9
608,204 - AO353_02855 0.31 -0.7
608,204 - AO353_02855 0.31 -0.7
608,272 - AO353_02855 0.46 -1.4
608,281 - AO353_02855 0.48 +0.6
608,281 - AO353_02855 0.48 +0.2
608,281 - AO353_02855 0.48 +1.9
608,281 - AO353_02855 0.48 -0.2
608,281 - AO353_02855 0.48 -0.8
608,386 + AO353_02855 0.72 -0.9
608,387 - AO353_02855 0.72 -1.0
608,387 - AO353_02855 0.72 -0.4
608,387 - AO353_02855 0.72 +0.3
608,387 - AO353_02855 0.72 +0.9
608,433 - AO353_02855 0.82 -0.6
608,493 + +0.5
608,493 + +0.7
608,493 + -0.2
608,493 + +1.0
608,494 - -1.4
608,494 - +1.4
608,494 - -0.3
608,494 - -1.7
608,494 - -0.2
608,515 + -0.7
608,515 + +0.4
608,515 + -0.3
608,515 + +0.3
608,515 + -0.4
608,515 + -1.0
608,515 + +0.4
608,515 + +0.4
608,516 - +0.4
608,516 - -0.7
608,516 - -0.2
608,516 - -0.3
608,516 - -2.4
608,535 + +1.7
608,602 + AO353_02860 0.22 +0.1
608,602 + AO353_02860 0.22 -0.2
608,603 - +1.4
608,603 - AO353_02860 0.22 +1.4
608,603 - AO353_02860 0.22 +1.4
608,669 - AO353_02860 0.38 +1.0
608,697 - AO353_02860 0.45 -0.2
608,697 - AO353_02860 0.45 -0.4
608,697 - AO353_02860 0.45 +1.6
608,697 - AO353_02860 0.45 +1.1
608,809 + AO353_02860 0.72 +0.1
608,809 + AO353_02860 0.72 +0.2
608,809 + AO353_02860 0.72 -0.4
608,809 + AO353_02860 0.72 +1.1
608,809 + AO353_02860 0.72 -1.2
608,809 + AO353_02860 0.72 -0.4
608,809 + AO353_02860 0.72 -1.8
608,809 + AO353_02860 0.72 -1.3
608,809 + AO353_02860 0.72 -1.5
608,810 - AO353_02860 0.73 -0.6
608,810 - AO353_02860 0.73 +0.6
608,810 - AO353_02860 0.73 -1.0
608,810 - AO353_02860 0.73 +0.1
608,963 - +0.5
608,964 + -1.0
608,965 - +0.4
608,965 - -2.3
608,965 - -1.2
608,997 - +0.4
609,099 + -1.8
609,100 - -0.6
609,100 - -0.1
609,184 + +0.4
609,184 + -0.7
609,184 + -0.0
609,184 + -0.2
609,185 - +0.3
609,185 - -2.0
609,185 - -1.0
609,185 - +0.3
609,185 - -0.7
609,265 + AO353_02865 0.11 -1.4
609,331 + AO353_02865 0.19 +1.6
609,331 + AO353_02865 0.19 -0.4
609,331 + AO353_02865 0.19 +0.7
609,331 + AO353_02865 0.19 -0.5
609,331 + AO353_02865 0.19 -0.1
609,331 + AO353_02865 0.19 -0.5
609,332 - AO353_02865 0.19 +0.4
609,332 - AO353_02865 0.19 -0.4
609,332 - AO353_02865 0.19 +1.1
609,332 - AO353_02865 0.19 -1.5
609,332 - AO353_02865 0.19 -0.6
609,332 - AO353_02865 0.19 -0.5
609,332 - AO353_02865 0.19 -1.0
609,339 + AO353_02865 0.20 -0.4
609,340 - AO353_02865 0.20 +0.4
609,340 - AO353_02865 0.20 +0.4
609,340 - AO353_02865 0.20 +0.3
609,340 - AO353_02865 0.20 +0.8
609,340 - AO353_02865 0.20 -1.3
609,340 - AO353_02865 0.20 +1.7
609,340 - AO353_02865 0.20 +1.2
609,340 - AO353_02865 0.20 +0.0
609,382 + AO353_02865 0.25 +3.4
609,382 + AO353_02865 0.25 -0.4
609,382 + AO353_02865 0.25 -0.7
609,382 + AO353_02865 0.25 -1.3
609,382 + AO353_02865 0.25 -0.7
609,382 + AO353_02865 0.25 +1.0
609,382 + AO353_02865 0.25 -0.5
609,382 + AO353_02865 0.25 -1.0
609,383 - AO353_02865 0.26 +0.3
609,383 - AO353_02865 0.26 -1.0
609,472 + AO353_02865 0.36 -1.0
609,472 + AO353_02865 0.36 -1.3
609,473 - AO353_02865 0.36 -1.5
609,473 - AO353_02865 0.36 -0.4
609,523 + AO353_02865 0.43 -0.5
609,524 - AO353_02865 0.43 -1.5
609,524 - AO353_02865 0.43 -0.9
609,605 + AO353_02865 0.52 -1.6
609,646 + AO353_02865 0.57 +2.7
609,754 + AO353_02865 0.70 -1.0
609,754 + AO353_02865 0.70 -0.7
609,755 - AO353_02865 0.71 -0.9
609,755 - AO353_02865 0.71 -0.5
609,913 + AO353_02865 0.90 +0.8
609,913 + AO353_02865 0.90 -0.2
609,913 + AO353_02865 0.90 -1.6
609,913 + AO353_02865 0.90 -1.3
609,913 + AO353_02865 0.90 +1.1
609,913 + AO353_02865 0.90 -0.7
609,914 - AO353_02865 0.90 +2.0
609,914 - AO353_02865 0.90 +0.0
609,914 - AO353_02865 0.90 -0.9
609,914 - AO353_02865 0.90 +0.4
609,914 - AO353_02865 0.90 -0.7
609,914 - AO353_02865 0.90 +0.1
609,914 - AO353_02865 0.90 +0.1
609,986 + +0.3
609,992 + -1.0
610,012 + +0.4
610,012 + +0.8
610,013 - +0.8
610,013 - -1.3
610,013 - -0.2
610,045 + -0.0
610,046 - +1.2
610,053 - +0.1
610,053 - -0.2
610,053 - +0.1
610,158 + AO353_02870 0.12 +1.9
610,158 + AO353_02870 0.12 +0.6
610,158 + AO353_02870 0.12 +1.8
610,158 + AO353_02870 0.12 -1.0
610,158 + AO353_02870 0.12 -1.4
610,158 + AO353_02870 0.12 -0.7
610,159 - AO353_02870 0.12 -0.5
610,159 - AO353_02870 0.12 +0.6
610,159 - +0.8
610,159 - AO353_02870 0.12 -0.2
610,159 - AO353_02870 0.12 +0.1
610,159 - AO353_02870 0.12 +0.6
610,175 + AO353_02870 0.14 +0.3
610,175 + AO353_02870 0.14 -1.6
610,175 + AO353_02870 0.14 -0.7
610,175 + AO353_02870 0.14 +0.1
610,175 + AO353_02870 0.14 +0.4
610,175 + AO353_02870 0.14 +0.3
610,175 + AO353_02870 0.14 +0.8
610,175 + AO353_02870 0.14 -1.4
610,175 + AO353_02870 0.14 +1.4
610,175 + AO353_02870 0.14 +0.6
610,175 + AO353_02870 0.14 +1.3
610,175 + AO353_02870 0.14 -0.3
610,176 - AO353_02870 0.14 -0.5
610,176 - AO353_02870 0.14 +1.8
610,176 - AO353_02870 0.14 -0.1
610,176 - AO353_02870 0.14 -0.6
610,176 - AO353_02870 0.14 -1.0
610,176 - AO353_02870 0.14 +1.4
610,176 - AO353_02870 0.14 +0.5
610,176 - AO353_02870 0.14 +1.3
610,176 - AO353_02870 0.14 -0.8
610,229 + AO353_02870 0.20 -2.1
610,229 + AO353_02870 0.20 +1.2
610,229 + AO353_02870 0.20 +1.5
610,230 - AO353_02870 0.20 -1.3
610,237 + AO353_02870 0.21 -0.4
610,238 - +0.8
610,328 - AO353_02870 0.30 -0.7
610,328 - AO353_02870 0.30 +0.2
610,328 - AO353_02870 0.30 +1.2
610,328 - AO353_02870 0.30 -0.2
610,583 - AO353_02870 0.58 +0.9
610,583 - AO353_02870 0.58 -0.4
610,583 - AO353_02870 0.58 -1.5
610,687 + AO353_02870 0.69 -0.4
610,687 + AO353_02870 0.69 -0.8
610,687 + AO353_02870 0.69 -0.3
610,688 - AO353_02870 0.69 +1.4
610,688 - AO353_02870 0.69 -0.9
610,688 - AO353_02870 0.69 -0.4
610,688 - AO353_02870 0.69 -1.8
610,784 + AO353_02870 0.79 +0.6
610,784 + AO353_02870 0.79 -0.6
610,879 + AO353_02870 0.89 +1.0
610,932 + -0.0
610,965 + -2.0
610,965 + +1.7
610,966 - -0.9
610,966 - -0.2
610,966 - +0.5
610,988 + +1.4
610,989 - -0.7
610,989 - -0.4
610,989 - +0.2
610,989 - -0.2
610,989 - +0.1
610,989 - +0.8
610,989 - -1.6
610,989 - -1.8

Or see this region's nucleotide sequence