Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02825

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02820 and AO353_02825 are separated by 224 nucleotidesAO353_02825 and AO353_02830 are separated by 132 nucleotides AO353_02820: AO353_02820 - dienelactone hydrolase, at 597,956 to 598,747 _02820 AO353_02825: AO353_02825 - 4'-phosphopantetheinyl transferase, at 598,972 to 599,697 _02825 AO353_02830: AO353_02830 - histidine kinase, at 599,830 to 601,440 _02830 Position (kb) 598 599 600Strain fitness (log2 ratio) -2 -1 0 1 2at 597.981 kb on + strandat 597.981 kb on + strandat 597.982 kb on - strandat 598.034 kb on + strandat 598.034 kb on + strandat 598.034 kb on + strandat 598.034 kb on + strandat 598.035 kb on - strandat 598.035 kb on - strandat 598.035 kb on - strandat 598.067 kb on + strand, within AO353_02820at 598.067 kb on + strand, within AO353_02820at 598.067 kb on + strand, within AO353_02820at 598.068 kb on - strand, within AO353_02820at 598.068 kb on - strand, within AO353_02820at 598.070 kb on + strand, within AO353_02820at 598.070 kb on + strand, within AO353_02820at 598.070 kb on + strand, within AO353_02820at 598.071 kb on - strand, within AO353_02820at 598.071 kb on - strand, within AO353_02820at 598.071 kb on - strand, within AO353_02820at 598.071 kb on - strand, within AO353_02820at 598.076 kb on + strand, within AO353_02820at 598.076 kb on + strand, within AO353_02820at 598.145 kb on + strand, within AO353_02820at 598.145 kb on + strand, within AO353_02820at 598.146 kb on - strand, within AO353_02820at 598.146 kb on - strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.446 kb on + strand, within AO353_02820at 598.446 kb on + strand, within AO353_02820at 598.447 kb on - strand, within AO353_02820at 598.494 kb on + strand, within AO353_02820at 598.495 kb on - strand, within AO353_02820at 598.495 kb on - strand, within AO353_02820at 598.495 kb on - strand, within AO353_02820at 598.500 kb on + strand, within AO353_02820at 598.501 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.679 kb on + strandat 598.679 kb on + strandat 598.680 kb on - strandat 598.680 kb on - strandat 598.839 kb on + strandat 598.839 kb on + strandat 598.839 kb on + strandat 598.839 kb on + strandat 598.839 kb on + strandat 598.839 kb on + strandat 598.840 kb on - strandat 598.840 kb on - strandat 598.846 kb on + strandat 598.846 kb on + strandat 598.846 kb on + strandat 598.846 kb on + strandat 598.846 kb on + strandat 598.847 kb on - strandat 598.847 kb on - strandat 598.847 kb on - strandat 598.847 kb on - strandat 598.847 kb on - strandat 598.847 kb on - strandat 598.847 kb on - strandat 598.847 kb on - strandat 598.923 kb on + strandat 598.923 kb on + strandat 598.923 kb on + strandat 598.923 kb on + strandat 598.924 kb on - strandat 598.924 kb on - strandat 598.924 kb on - strandat 598.927 kb on - strandat 599.745 kb on + strandat 599.745 kb on + strandat 599.745 kb on + strandat 599.813 kb on + strandat 599.814 kb on - strandat 599.814 kb on - strandat 599.823 kb on - strandat 599.889 kb on + strandat 599.889 kb on + strandat 599.890 kb on - strandat 599.890 kb on - strandat 599.890 kb on - strandat 599.890 kb on - strandat 599.890 kb on - strandat 599.938 kb on + strandat 599.938 kb on + strandat 599.998 kb on + strand, within AO353_02830at 599.998 kb on + strand, within AO353_02830at 599.999 kb on - strand, within AO353_02830at 600.092 kb on + strand, within AO353_02830at 600.092 kb on + strand, within AO353_02830at 600.164 kb on + strand, within AO353_02830at 600.341 kb on + strand, within AO353_02830at 600.341 kb on + strand, within AO353_02830at 600.341 kb on + strand, within AO353_02830at 600.341 kb on + strand, within AO353_02830at 600.341 kb on + strand, within AO353_02830at 600.341 kb on + strand, within AO353_02830at 600.342 kb on - strand, within AO353_02830at 600.342 kb on - strand, within AO353_02830at 600.342 kb on - strand, within AO353_02830at 600.342 kb on - strand, within AO353_02830at 600.342 kb on - strand, within AO353_02830at 600.342 kb on - strand, within AO353_02830at 600.342 kb on - strand, within AO353_02830at 600.342 kb on - strand, within AO353_02830at 600.342 kb on - strand, within AO353_02830at 600.342 kb on - strand, within AO353_02830at 600.404 kb on + strand, within AO353_02830at 600.404 kb on + strand, within AO353_02830at 600.404 kb on + strand, within AO353_02830at 600.405 kb on - strand, within AO353_02830at 600.405 kb on - strand, within AO353_02830at 600.405 kb on - strand, within AO353_02830at 600.689 kb on + strand, within AO353_02830at 600.689 kb on + strand, within AO353_02830at 600.689 kb on + strand, within AO353_02830at 600.689 kb on + strand, within AO353_02830at 600.689 kb on + strand, within AO353_02830at 600.690 kb on - strand, within AO353_02830

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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597,981 + +1.2
597,981 + +0.1
597,982 - +1.8
598,034 + +0.8
598,034 + -2.1
598,034 + +1.2
598,034 + -1.0
598,035 - -0.3
598,035 - -1.7
598,035 - +0.4
598,067 + AO353_02820 0.14 -1.4
598,067 + AO353_02820 0.14 +1.1
598,067 + AO353_02820 0.14 -0.6
598,068 - AO353_02820 0.14 +0.6
598,068 - AO353_02820 0.14 +0.1
598,070 + AO353_02820 0.14 -0.3
598,070 + AO353_02820 0.14 +0.1
598,070 + AO353_02820 0.14 -1.4
598,071 - AO353_02820 0.15 -0.0
598,071 - AO353_02820 0.15 -1.7
598,071 - AO353_02820 0.15 -1.5
598,071 - AO353_02820 0.15 +1.0
598,076 + AO353_02820 0.15 -0.6
598,076 + AO353_02820 0.15 +1.2
598,145 + AO353_02820 0.24 -1.4
598,145 + AO353_02820 0.24 -0.4
598,146 - AO353_02820 0.24 -0.2
598,146 - AO353_02820 0.24 -1.3
598,204 + AO353_02820 0.31 +0.3
598,204 + AO353_02820 0.31 +0.0
598,204 + AO353_02820 0.31 -0.2
598,204 + AO353_02820 0.31 +0.1
598,204 + AO353_02820 0.31 +0.5
598,204 + AO353_02820 0.31 -1.8
598,204 + AO353_02820 0.31 -1.7
598,204 + AO353_02820 0.31 +0.7
598,205 - AO353_02820 0.31 -0.1
598,205 - AO353_02820 0.31 -1.2
598,205 - AO353_02820 0.31 +0.2
598,205 - AO353_02820 0.31 -1.2
598,205 - AO353_02820 0.31 -0.7
598,205 - AO353_02820 0.31 -0.3
598,208 + AO353_02820 0.32 +0.0
598,208 + AO353_02820 0.32 -0.9
598,208 + AO353_02820 0.32 +0.1
598,208 + AO353_02820 0.32 -1.9
598,208 + AO353_02820 0.32 -0.4
598,208 + AO353_02820 0.32 -1.3
598,208 + AO353_02820 0.32 -0.3
598,208 + AO353_02820 0.32 +0.2
598,209 - AO353_02820 0.32 -0.1
598,209 - AO353_02820 0.32 -0.2
598,209 - AO353_02820 0.32 -0.2
598,209 - AO353_02820 0.32 -0.2
598,209 - AO353_02820 0.32 +0.4
598,209 - AO353_02820 0.32 -1.3
598,209 - AO353_02820 0.32 -2.0
598,209 - AO353_02820 0.32 +1.7
598,209 - AO353_02820 0.32 -0.3
598,209 - AO353_02820 0.32 -1.2
598,209 - AO353_02820 0.32 +0.9
598,209 - AO353_02820 0.32 -0.3
598,209 - AO353_02820 0.32 +0.8
598,209 - AO353_02820 0.32 +0.3
598,209 - AO353_02820 0.32 -1.0
598,446 + AO353_02820 0.62 -0.1
598,446 + AO353_02820 0.62 +0.1
598,447 - AO353_02820 0.62 -0.2
598,494 + AO353_02820 0.68 -0.6
598,495 - AO353_02820 0.68 -0.7
598,495 - AO353_02820 0.68 +0.9
598,495 - AO353_02820 0.68 -0.7
598,500 + AO353_02820 0.69 -1.6
598,501 - AO353_02820 0.69 -0.5
598,584 - AO353_02820 0.79 +0.3
598,584 - AO353_02820 0.79 +0.4
598,584 - AO353_02820 0.79 +0.6
598,584 - AO353_02820 0.79 +0.8
598,584 - AO353_02820 0.79 +0.3
598,584 - AO353_02820 0.79 +1.0
598,584 - AO353_02820 0.79 -1.0
598,585 + AO353_02820 0.79 -0.0
598,585 + AO353_02820 0.79 -0.3
598,585 + AO353_02820 0.79 +1.4
598,585 + AO353_02820 0.79 +0.1
598,585 + AO353_02820 0.79 -0.5
598,585 + AO353_02820 0.79 -0.8
598,585 + AO353_02820 0.79 -0.2
598,585 + AO353_02820 0.79 +0.3
598,585 + AO353_02820 0.79 -0.3
598,585 + AO353_02820 0.79 +0.3
598,586 - AO353_02820 0.80 +0.8
598,586 - AO353_02820 0.80 -0.7
598,586 - AO353_02820 0.80 -1.5
598,586 - AO353_02820 0.80 +0.1
598,586 - AO353_02820 0.80 -0.5
598,586 - AO353_02820 0.80 +0.8
598,679 + +0.1
598,679 + +0.1
598,680 - -0.3
598,680 - +1.1
598,839 + +0.1
598,839 + -1.2
598,839 + +0.4
598,839 + -0.2
598,839 + +1.1
598,839 + +1.0
598,840 - -0.2
598,840 - +0.1
598,846 + -0.0
598,846 + -0.0
598,846 + -0.4
598,846 + -1.6
598,846 + +1.4
598,847 - +1.1
598,847 - +0.4
598,847 - +1.9
598,847 - +1.0
598,847 - +0.7
598,847 - -0.2
598,847 - -0.9
598,847 - -0.9
598,923 + +0.1
598,923 + +1.2
598,923 + -2.0
598,923 + +0.2
598,924 - +1.3
598,924 - +0.6
598,924 - +0.6
598,927 - +2.0
599,745 + -0.8
599,745 + -0.7
599,745 + -1.3
599,813 + -1.3
599,814 - -0.9
599,814 - -1.6
599,823 - -0.7
599,889 + -0.1
599,889 + -2.0
599,890 - -1.7
599,890 - +0.8
599,890 - +0.0
599,890 - +0.8
599,890 - +1.8
599,938 + -1.0
599,938 + +0.1
599,998 + AO353_02830 0.10 -1.2
599,998 + AO353_02830 0.10 -0.1
599,999 - AO353_02830 0.10 -1.0
600,092 + AO353_02830 0.16 -0.2
600,092 + AO353_02830 0.16 +0.1
600,164 + AO353_02830 0.21 +1.4
600,341 + AO353_02830 0.32 +0.4
600,341 + AO353_02830 0.32 -0.4
600,341 + AO353_02830 0.32 -2.4
600,341 + AO353_02830 0.32 -0.4
600,341 + AO353_02830 0.32 -0.7
600,341 + AO353_02830 0.32 -2.3
600,342 - AO353_02830 0.32 +0.5
600,342 - AO353_02830 0.32 +0.1
600,342 - AO353_02830 0.32 +0.0
600,342 - AO353_02830 0.32 +0.6
600,342 - AO353_02830 0.32 -0.9
600,342 - AO353_02830 0.32 +0.7
600,342 - AO353_02830 0.32 -1.6
600,342 - AO353_02830 0.32 +0.3
600,342 - AO353_02830 0.32 -2.0
600,342 - AO353_02830 0.32 +0.3
600,404 + AO353_02830 0.36 -0.1
600,404 + AO353_02830 0.36 -0.7
600,404 + AO353_02830 0.36 -0.5
600,405 - AO353_02830 0.36 +1.7
600,405 - AO353_02830 0.36 -0.6
600,405 - AO353_02830 0.36 -0.6
600,689 + AO353_02830 0.53 -2.4
600,689 + AO353_02830 0.53 -1.1
600,689 + AO353_02830 0.53 -0.0
600,689 + AO353_02830 0.53 -0.1
600,689 + AO353_02830 0.53 -2.3
600,690 - AO353_02830 0.53 +0.2

Or see this region's nucleotide sequence