Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02765

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02755 and AO353_02760 are separated by 116 nucleotidesAO353_02760 and AO353_02765 overlap by 4 nucleotidesAO353_02765 and AO353_02770 are separated by 1 nucleotidesAO353_02770 and AO353_02775 are separated by 111 nucleotides AO353_02755: AO353_02755 - peroxiredoxin, at 586,199 to 586,666 _02755 AO353_02760: AO353_02760 - arsenate reductase, at 586,783 to 587,136 _02760 AO353_02765: AO353_02765 - NAD(P)H-quinone oxidoreductase, at 587,133 to 587,729 _02765 AO353_02770: AO353_02770 - hypothetical protein, at 587,731 to 588,156 _02770 AO353_02775: AO353_02775 - 3-methyladenine DNA glycosylase, at 588,268 to 588,939 _02775 Position (kb) 587 588Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.510 kb on + strand, within AO353_02755at 586.511 kb on - strand, within AO353_02755at 586.511 kb on - strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.528 kb on - strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.569 kb on - strand, within AO353_02755at 586.596 kb on + strand, within AO353_02755at 586.596 kb on + strand, within AO353_02755at 586.597 kb on - strand, within AO353_02755at 586.597 kb on - strand, within AO353_02755at 586.678 kb on + strandat 586.678 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.746 kb on - strandat 586.746 kb on - strandat 586.746 kb on - strandat 586.746 kb on - strandat 586.746 kb on - strandat 586.762 kb on + strandat 586.762 kb on + strandat 586.762 kb on + strandat 586.763 kb on - strandat 586.802 kb on - strandat 587.138 kb on + strandat 587.139 kb on - strandat 587.139 kb on - strandat 587.139 kb on - strandat 587.145 kb on + strandat 587.146 kb on - strandat 587.146 kb on - strandat 587.146 kb on - strandat 587.160 kb on + strandat 587.160 kb on + strandat 587.160 kb on + strandat 587.160 kb on + strandat 587.161 kb on - strandat 587.161 kb on - strandat 587.161 kb on - strandat 587.161 kb on - strandat 587.163 kb on + strandat 587.163 kb on + strandat 587.164 kb on - strandat 587.164 kb on - strandat 587.164 kb on - strandat 587.164 kb on - strandat 587.314 kb on - strand, within AO353_02765at 587.400 kb on + strand, within AO353_02765at 587.400 kb on + strand, within AO353_02765at 587.400 kb on + strand, within AO353_02765at 587.401 kb on - strand, within AO353_02765at 587.401 kb on - strand, within AO353_02765at 587.401 kb on - strand, within AO353_02765at 587.566 kb on - strand, within AO353_02765at 587.815 kb on + strand, within AO353_02770at 587.815 kb on + strand, within AO353_02770at 587.815 kb on + strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.835 kb on - strand, within AO353_02770at 587.835 kb on - strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.846 kb on - strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.990 kb on - strand, within AO353_02770at 587.990 kb on - strand, within AO353_02770at 587.990 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.120 kb on + strandat 588.120 kb on + strandat 588.120 kb on + strandat 588.120 kb on + strandat 588.121 kb on - strandat 588.121 kb on - strandat 588.121 kb on - strandat 588.181 kb on + strandat 588.181 kb on + strandat 588.182 kb on - strandat 588.200 kb on + strandat 588.215 kb on + strandat 588.223 kb on - strandat 588.230 kb on + strandat 588.230 kb on + strandat 588.231 kb on - strandat 588.231 kb on - strandat 588.284 kb on + strandat 588.284 kb on + strandat 588.284 kb on + strandat 588.284 kb on + strandat 588.284 kb on + strandat 588.285 kb on - strandat 588.302 kb on - strandat 588.431 kb on + strand, within AO353_02775at 588.431 kb on + strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.432 kb on - strand, within AO353_02775at 588.518 kb on + strand, within AO353_02775at 588.518 kb on + strand, within AO353_02775at 588.518 kb on + strand, within AO353_02775at 588.518 kb on + strand, within AO353_02775at 588.519 kb on - strand, within AO353_02775

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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586,299 + AO353_02755 0.21 +1.1
586,299 + AO353_02755 0.21 +0.6
586,299 + AO353_02755 0.21 -2.0
586,299 + AO353_02755 0.21 +0.8
586,299 + AO353_02755 0.21 -0.2
586,299 + AO353_02755 0.21 +0.6
586,299 + AO353_02755 0.21 +2.0
586,299 + AO353_02755 0.21 -2.0
586,299 + AO353_02755 0.21 -1.8
586,299 + AO353_02755 0.21 +1.1
586,299 + AO353_02755 0.21 +1.4
586,299 + AO353_02755 0.21 -0.8
586,299 + AO353_02755 0.21 -0.4
586,299 + AO353_02755 0.21 -0.7
586,299 + AO353_02755 0.21 -1.5
586,299 + AO353_02755 0.21 -2.4
586,300 - AO353_02755 0.22 +0.5
586,300 - AO353_02755 0.22 +3.3
586,300 - AO353_02755 0.22 -0.9
586,300 - AO353_02755 0.22 -1.7
586,300 - AO353_02755 0.22 -0.4
586,300 - AO353_02755 0.22 -1.9
586,300 - AO353_02755 0.22 -1.2
586,300 - AO353_02755 0.22 +0.4
586,300 - AO353_02755 0.22 +0.6
586,300 - AO353_02755 0.22 +0.3
586,300 - AO353_02755 0.22 -0.7
586,300 - AO353_02755 0.22 -1.0
586,300 - AO353_02755 0.22 -0.5
586,300 - AO353_02755 0.22 -0.5
586,300 - AO353_02755 0.22 -2.3
586,300 - AO353_02755 0.22 -1.2
586,300 - AO353_02755 0.22 -0.9
586,300 - AO353_02755 0.22 -0.9
586,300 - AO353_02755 0.22 +1.4
586,300 - AO353_02755 0.22 +0.3
586,300 - AO353_02755 0.22 -0.4
586,300 - AO353_02755 0.22 -0.4
586,300 - AO353_02755 0.22 -1.0
586,300 - AO353_02755 0.22 -2.0
586,510 + AO353_02755 0.66 -0.9
586,511 - AO353_02755 0.67 +3.1
586,511 - AO353_02755 0.67 -2.5
586,527 + AO353_02755 0.70 +0.2
586,527 + AO353_02755 0.70 -0.4
586,527 + AO353_02755 0.70 +0.3
586,527 + AO353_02755 0.70 -3.0
586,528 - AO353_02755 0.70 +1.2
586,531 + AO353_02755 0.71 -0.4
586,531 + AO353_02755 0.71 +0.0
586,531 + AO353_02755 0.71 +0.4
586,531 + AO353_02755 0.71 -1.4
586,531 + AO353_02755 0.71 -0.3
586,531 + AO353_02755 0.71 +1.4
586,532 - AO353_02755 0.71 -1.3
586,532 - AO353_02755 0.71 -0.6
586,532 - AO353_02755 0.71 +0.1
586,532 - AO353_02755 0.71 +0.1
586,532 - AO353_02755 0.71 +0.7
586,569 - AO353_02755 0.79 -1.2
586,596 + AO353_02755 0.85 -0.2
586,596 + AO353_02755 0.85 -0.9
586,597 - AO353_02755 0.85 -0.5
586,597 - AO353_02755 0.85 -1.0
586,678 + +1.8
586,678 + +0.9
586,745 + -0.7
586,745 + -1.0
586,745 + -0.6
586,745 + -1.0
586,745 + -1.3
586,745 + -0.4
586,745 + +0.7
586,746 - +1.8
586,746 - -0.6
586,746 - -1.2
586,746 - +1.0
586,746 - +1.2
586,762 + +0.6
586,762 + -0.2
586,762 + +1.4
586,763 - -0.9
586,802 - -2.6
587,138 + -3.2
587,139 - -1.2
587,139 - -1.2
587,139 - -2.6
587,145 + -2.2
587,146 - -1.2
587,146 - -1.0
587,146 - -0.4
587,160 + -1.7
587,160 + -1.8
587,160 + -1.3
587,160 + +1.2
587,161 - -0.7
587,161 - -0.5
587,161 - -1.0
587,161 - -0.2
587,163 + -1.7
587,163 + -0.9
587,164 - -1.3
587,164 - -0.0
587,164 - -0.9
587,164 - -0.6
587,314 - AO353_02765 0.30 -1.3
587,400 + AO353_02765 0.45 -1.0
587,400 + AO353_02765 0.45 -2.4
587,400 + AO353_02765 0.45 -1.8
587,401 - AO353_02765 0.45 -0.3
587,401 - AO353_02765 0.45 -0.6
587,401 - AO353_02765 0.45 -1.3
587,566 - AO353_02765 0.73 -1.8
587,815 + AO353_02770 0.20 +0.1
587,815 + AO353_02770 0.20 -1.2
587,815 + AO353_02770 0.20 -0.2
587,816 - AO353_02770 0.20 +0.6
587,816 - AO353_02770 0.20 -0.4
587,816 - AO353_02770 0.20 +0.5
587,816 - AO353_02770 0.20 -0.3
587,816 - AO353_02770 0.20 -1.4
587,816 - AO353_02770 0.20 -0.9
587,835 - AO353_02770 0.24 -0.1
587,835 - AO353_02770 0.24 -0.5
587,845 + AO353_02770 0.27 +1.4
587,845 + AO353_02770 0.27 -0.6
587,845 + AO353_02770 0.27 +1.0
587,845 + AO353_02770 0.27 +1.1
587,845 + AO353_02770 0.27 -0.4
587,846 - AO353_02770 0.27 -0.5
587,848 + AO353_02770 0.27 -1.0
587,848 + AO353_02770 0.27 -0.4
587,848 + AO353_02770 0.27 +0.3
587,848 + AO353_02770 0.27 -0.4
587,848 + AO353_02770 0.27 +1.1
587,848 + AO353_02770 0.27 -0.3
587,849 - AO353_02770 0.28 -0.2
587,849 - AO353_02770 0.28 +0.9
587,849 - AO353_02770 0.28 -0.7
587,849 - AO353_02770 0.28 -0.3
587,849 - AO353_02770 0.28 -0.7
587,989 + AO353_02770 0.61 +0.4
587,989 + AO353_02770 0.61 -0.3
587,989 + AO353_02770 0.61 +1.1
587,989 + AO353_02770 0.61 +1.0
587,989 + AO353_02770 0.61 -1.0
587,990 - AO353_02770 0.61 +1.4
587,990 - AO353_02770 0.61 -0.2
587,990 - AO353_02770 0.61 -1.7
588,092 - AO353_02770 0.85 +0.4
588,092 - AO353_02770 0.85 +1.6
588,092 - AO353_02770 0.85 +0.7
588,092 - AO353_02770 0.85 -1.7
588,092 - AO353_02770 0.85 +0.7
588,092 - AO353_02770 0.85 -0.5
588,092 - AO353_02770 0.85 +1.6
588,092 - AO353_02770 0.85 -1.7
588,092 - AO353_02770 0.85 +0.4
588,092 - AO353_02770 0.85 +0.5
588,092 - AO353_02770 0.85 +0.7
588,120 + +0.8
588,120 + +2.4
588,120 + -0.2
588,120 + -0.9
588,121 - +0.4
588,121 - +0.6
588,121 - +0.0
588,181 + +0.8
588,181 + +1.6
588,182 - -1.7
588,200 + -0.4
588,215 + -0.0
588,223 - -0.5
588,230 + +0.3
588,230 + -0.2
588,231 - +0.6
588,231 - -1.2
588,284 + +0.4
588,284 + -0.6
588,284 + -1.2
588,284 + +1.1
588,284 + -1.0
588,285 - -1.8
588,302 - +0.4
588,431 + AO353_02775 0.24 -0.7
588,431 + AO353_02775 0.24 +0.3
588,432 - AO353_02775 0.24 +0.7
588,432 - AO353_02775 0.24 +1.3
588,432 - AO353_02775 0.24 -1.8
588,432 - AO353_02775 0.24 -0.4
588,432 - AO353_02775 0.24 +0.1
588,432 - AO353_02775 0.24 +0.1
588,518 + AO353_02775 0.37 -0.5
588,518 + AO353_02775 0.37 -1.2
588,518 + AO353_02775 0.37 -0.6
588,518 + AO353_02775 0.37 -2.9
588,519 - AO353_02775 0.37 +0.7

Or see this region's nucleotide sequence