Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02660 and AO353_02665 are separated by 213 nucleotides AO353_02665 and AO353_02670 are separated by 232 nucleotides
AO353_02660: AO353_02660 - peptidase P60, at 565,757 to 566,380
_02660
AO353_02665: AO353_02665 - DnaA regulatory inactivator Hda, at 566,594 to 567,298
_02665
AO353_02670: AO353_02670 - hypothetical protein, at 567,531 to 568,601
_02670
Position (kb) 566
567
568 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.665 kb on - strand at 565.672 kb on + strand at 565.676 kb on + strand at 565.677 kb on - strand at 565.686 kb on + strand at 565.686 kb on + strand at 565.686 kb on + strand at 565.686 kb on + strand at 565.724 kb on + strand at 565.732 kb on + strand at 565.738 kb on + strand at 565.738 kb on - strand at 565.831 kb on - strand, within AO353_02660 at 565.831 kb on - strand, within AO353_02660 at 565.847 kb on - strand, within AO353_02660 at 565.908 kb on + strand, within AO353_02660 at 565.908 kb on + strand, within AO353_02660 at 565.909 kb on - strand, within AO353_02660 at 566.067 kb on + strand, within AO353_02660 at 566.185 kb on - strand, within AO353_02660 at 566.241 kb on + strand, within AO353_02660 at 566.241 kb on + strand, within AO353_02660 at 566.241 kb on + strand, within AO353_02660 at 566.241 kb on + strand, within AO353_02660 at 566.242 kb on - strand, within AO353_02660 at 566.246 kb on - strand, within AO353_02660 at 566.375 kb on + strand at 566.375 kb on + strand at 566.375 kb on + strand at 566.375 kb on + strand at 566.375 kb on + strand at 566.375 kb on + strand at 566.376 kb on - strand at 566.376 kb on - strand at 566.376 kb on - strand at 566.376 kb on - strand at 566.404 kb on + strand at 566.404 kb on + strand at 566.419 kb on + strand at 566.419 kb on + strand at 566.419 kb on + strand at 566.420 kb on - strand at 566.420 kb on - strand at 566.428 kb on + strand at 566.428 kb on + strand at 566.428 kb on + strand at 566.429 kb on - strand at 566.429 kb on - strand at 566.429 kb on - strand at 566.429 kb on - strand at 566.469 kb on + strand at 566.470 kb on - strand at 566.490 kb on + strand at 566.490 kb on + strand at 566.490 kb on + strand at 566.491 kb on - strand at 566.491 kb on - strand at 566.491 kb on - strand at 566.491 kb on - strand at 566.491 kb on - strand at 566.498 kb on + strand at 566.498 kb on + strand at 566.509 kb on + strand at 566.509 kb on + strand at 566.509 kb on + strand at 566.595 kb on + strand at 566.595 kb on + strand at 566.595 kb on + strand at 566.596 kb on - strand at 567.357 kb on - strand at 567.357 kb on - strand at 567.357 kb on - strand at 567.452 kb on + strand at 567.452 kb on + strand at 567.452 kb on + strand at 567.453 kb on - strand at 567.453 kb on - strand at 567.453 kb on - strand at 567.453 kb on - strand at 567.453 kb on - strand at 567.453 kb on - strand at 567.453 kb on - strand at 567.453 kb on - strand at 567.453 kb on - strand at 567.474 kb on + strand at 567.475 kb on - strand at 567.475 kb on - strand at 567.556 kb on + strand at 567.556 kb on + strand at 567.556 kb on + strand at 567.556 kb on + strand at 567.557 kb on - strand at 567.557 kb on - strand at 567.557 kb on - strand at 567.557 kb on - strand at 567.557 kb on - strand at 567.573 kb on - strand at 567.574 kb on + strand at 567.576 kb on + strand at 567.577 kb on - strand at 567.862 kb on + strand, within AO353_02670 at 567.862 kb on + strand, within AO353_02670 at 567.862 kb on + strand, within AO353_02670 at 567.862 kb on + strand, within AO353_02670 at 567.862 kb on + strand, within AO353_02670 at 567.863 kb on - strand, within AO353_02670 at 567.863 kb on - strand, within AO353_02670 at 567.863 kb on - strand, within AO353_02670 at 567.863 kb on - strand, within AO353_02670 at 567.943 kb on + strand, within AO353_02670 at 567.943 kb on + strand, within AO353_02670 at 567.944 kb on - strand, within AO353_02670 at 568.029 kb on + strand, within AO353_02670 at 568.029 kb on + strand, within AO353_02670 at 568.030 kb on - strand, within AO353_02670 at 568.102 kb on + strand, within AO353_02670 at 568.102 kb on + strand, within AO353_02670 at 568.103 kb on - strand, within AO353_02670 at 568.273 kb on - strand, within AO353_02670 at 568.273 kb on - strand, within AO353_02670 at 568.273 kb on - strand, within AO353_02670 at 568.273 kb on - strand, within AO353_02670
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 565,594 - -2.5 565,594 - -0.8 565,594 - +0.4 565,594 - -2.0 565,594 - -0.6 565,594 - -2.1 565,594 - -0.6 565,594 - -0.4 565,594 - -0.6 565,594 - +0.1 565,594 - +0.1 565,594 - -1.0 565,594 - -0.3 565,665 - -0.4 565,672 + +0.1 565,676 + -1.0 565,677 - -1.2 565,686 + -1.1 565,686 + -0.8 565,686 + -0.4 565,686 + -1.5 565,724 + -0.4 565,732 + -2.3 565,738 + -2.0 565,738 - -0.4 565,831 - AO353_02660 0.12 -1.8 565,831 - AO353_02660 0.12 +1.2 565,847 - AO353_02660 0.14 -2.0 565,908 + AO353_02660 0.24 -1.6 565,908 + AO353_02660 0.24 -2.1 565,909 - AO353_02660 0.24 +0.1 566,067 + AO353_02660 0.50 -1.9 566,185 - AO353_02660 0.69 -1.6 566,241 + AO353_02660 0.78 -1.7 566,241 + AO353_02660 0.78 +1.6 566,241 + AO353_02660 0.78 -0.1 566,241 + AO353_02660 0.78 +1.1 566,242 - AO353_02660 0.78 +1.1 566,246 - AO353_02660 0.78 -2.9 566,375 + +0.1 566,375 + +0.3 566,375 + +1.1 566,375 + -3.3 566,375 + +0.8 566,375 + -0.6 566,376 - -0.9 566,376 - +0.4 566,376 - -0.2 566,376 - -1.9 566,404 + +2.4 566,404 + +0.8 566,419 + -1.9 566,419 + -1.1 566,419 + -0.9 566,420 - -0.5 566,420 - -0.4 566,428 + +0.4 566,428 + -0.6 566,428 + -0.8 566,429 - +0.4 566,429 - -0.7 566,429 - -0.9 566,429 - -0.9 566,469 + +0.1 566,470 - -0.4 566,490 + +0.1 566,490 + -1.2 566,490 + -0.4 566,491 - +0.8 566,491 - +0.7 566,491 - +1.6 566,491 - +0.6 566,491 - +1.0 566,498 + -0.7 566,498 + -1.9 566,509 + +0.5 566,509 + -0.4 566,509 + -1.7 566,595 + -1.4 566,595 + -1.7 566,595 + -1.6 566,596 - +0.6 567,357 - -0.2 567,357 - -1.0 567,357 - -0.8 567,452 + -0.2 567,452 + +0.3 567,452 + +1.9 567,453 - -0.4 567,453 - +1.1 567,453 - +1.5 567,453 - -0.6 567,453 - +0.8 567,453 - -1.8 567,453 - +0.4 567,453 - -1.5 567,453 - -1.2 567,474 + +1.5 567,475 - -1.1 567,475 - +1.0 567,556 + +2.0 567,556 + +0.1 567,556 + -0.6 567,556 + -0.4 567,557 - +1.4 567,557 - -0.2 567,557 - -0.7 567,557 - +0.1 567,557 - -2.7 567,573 - -1.3 567,574 + +0.8 567,576 + -0.9 567,577 - -0.9 567,862 + AO353_02670 0.31 -1.2 567,862 + AO353_02670 0.31 -0.7 567,862 + AO353_02670 0.31 +0.4 567,862 + AO353_02670 0.31 -1.3 567,862 + AO353_02670 0.31 +0.8 567,863 - AO353_02670 0.31 -2.5 567,863 - AO353_02670 0.31 -0.1 567,863 - AO353_02670 0.31 -2.1 567,863 - AO353_02670 0.31 -0.2 567,943 + AO353_02670 0.38 -0.2 567,943 + AO353_02670 0.38 +1.6 567,944 - AO353_02670 0.39 +0.4 568,029 + AO353_02670 0.46 +1.9 568,029 + AO353_02670 0.46 +1.3 568,030 - AO353_02670 0.47 +0.6 568,102 + AO353_02670 0.53 +0.6 568,102 + AO353_02670 0.53 -0.4 568,103 - AO353_02670 0.53 -0.2 568,273 - AO353_02670 0.69 -0.2 568,273 - AO353_02670 0.69 +0.9 568,273 - AO353_02670 0.69 +0.4 568,273 - AO353_02670 0.69 -1.1
Or see this region's nucleotide sequence