Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02525

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02520 and AO353_02525 are separated by 118 nucleotidesAO353_02525 and AO353_02530 are separated by 91 nucleotides AO353_02520: AO353_02520 - sodium transporter, at 536,655 to 537,620 _02520 AO353_02525: AO353_02525 - molecular chaperone, at 537,739 to 538,059 _02525 AO353_02530: AO353_02530 - glycerol acyltransferase, at 538,151 to 540,025 _02530 Position (kb) 537 538 539Strain fitness (log2 ratio) -2 -1 0 1 2 3at 537.351 kb on - strand, within AO353_02520at 537.351 kb on - strand, within AO353_02520at 537.351 kb on - strand, within AO353_02520at 537.375 kb on + strand, within AO353_02520at 537.375 kb on + strand, within AO353_02520at 537.558 kb on + strandat 537.558 kb on + strandat 537.558 kb on + strandat 537.559 kb on - strandat 537.559 kb on - strandat 537.559 kb on - strandat 537.559 kb on - strandat 537.559 kb on - strandat 537.559 kb on - strandat 537.559 kb on - strandat 537.626 kb on + strandat 537.646 kb on + strandat 537.647 kb on - strandat 537.656 kb on + strandat 537.656 kb on + strandat 537.656 kb on + strandat 537.656 kb on + strandat 537.658 kb on + strandat 537.658 kb on + strandat 537.658 kb on + strandat 537.659 kb on - strandat 537.659 kb on - strandat 537.659 kb on - strandat 537.659 kb on - strandat 537.698 kb on + strandat 537.698 kb on + strandat 537.698 kb on + strandat 537.699 kb on - strandat 537.699 kb on - strandat 537.701 kb on + strandat 537.701 kb on + strandat 537.701 kb on + strandat 537.701 kb on + strandat 537.701 kb on + strandat 537.701 kb on + strandat 537.702 kb on - strandat 537.702 kb on - strandat 537.702 kb on - strandat 537.702 kb on - strandat 537.702 kb on - strandat 537.702 kb on - strandat 537.802 kb on + strand, within AO353_02525at 537.802 kb on + strand, within AO353_02525at 537.803 kb on - strand, within AO353_02525at 537.803 kb on - strand, within AO353_02525at 537.803 kb on - strand, within AO353_02525at 537.803 kb on - strand, within AO353_02525at 537.803 kb on - strand, within AO353_02525at 537.804 kb on + strand, within AO353_02525at 537.804 kb on + strand, within AO353_02525at 537.805 kb on - strand, within AO353_02525at 537.805 kb on - strand, within AO353_02525at 537.858 kb on - strand, within AO353_02525at 537.858 kb on - strand, within AO353_02525at 537.914 kb on - strand, within AO353_02525at 537.914 kb on - strand, within AO353_02525at 538.057 kb on + strandat 538.057 kb on + strandat 538.057 kb on + strandat 538.058 kb on - strandat 538.058 kb on - strandat 538.088 kb on - strandat 538.093 kb on + strandat 538.093 kb on + strandat 538.093 kb on + strandat 538.093 kb on + strandat 538.093 kb on + strandat 538.094 kb on - strandat 538.094 kb on - strandat 538.100 kb on + strandat 538.101 kb on - strandat 538.101 kb on - strandat 538.109 kb on - strandat 538.152 kb on + strandat 538.152 kb on + strandat 538.152 kb on + strandat 538.152 kb on + strandat 538.153 kb on - strandat 538.153 kb on - strandat 538.153 kb on - strandat 538.153 kb on - strandat 538.156 kb on + strandat 538.156 kb on + strandat 538.156 kb on + strandat 538.157 kb on - strandat 538.449 kb on + strand, within AO353_02530at 538.449 kb on + strand, within AO353_02530at 538.450 kb on - strand, within AO353_02530at 538.558 kb on + strand, within AO353_02530at 538.559 kb on - strand, within AO353_02530at 538.559 kb on - strandat 538.559 kb on - strand, within AO353_02530at 538.559 kb on - strand, within AO353_02530at 538.559 kb on - strand, within AO353_02530at 538.559 kb on - strand, within AO353_02530at 538.559 kb on - strand, within AO353_02530at 538.560 kb on + strand, within AO353_02530at 538.560 kb on + strand, within AO353_02530at 538.560 kb on + strand, within AO353_02530at 538.560 kb on + strand, within AO353_02530at 538.560 kb on + strand, within AO353_02530at 538.560 kb on + strand, within AO353_02530at 538.560 kb on + strand, within AO353_02530at 538.560 kb on + strand, within AO353_02530at 538.561 kb on - strand, within AO353_02530at 538.561 kb on - strand, within AO353_02530at 538.561 kb on - strand, within AO353_02530at 538.561 kb on - strand, within AO353_02530at 538.561 kb on - strand, within AO353_02530at 538.561 kb on - strand, within AO353_02530at 538.561 kb on - strand, within AO353_02530at 538.561 kb on - strand, within AO353_02530at 538.561 kb on - strand, within AO353_02530at 538.561 kb on - strand, within AO353_02530at 538.569 kb on + strand, within AO353_02530at 538.569 kb on + strand, within AO353_02530at 538.569 kb on + strand, within AO353_02530at 538.569 kb on + strand, within AO353_02530at 538.569 kb on + strand, within AO353_02530at 538.569 kb on + strand, within AO353_02530at 538.569 kb on + strand, within AO353_02530at 538.569 kb on + strand, within AO353_02530at 538.569 kb on + strand, within AO353_02530at 538.569 kb on + strand, within AO353_02530at 538.570 kb on - strand, within AO353_02530at 538.570 kb on - strand, within AO353_02530at 538.570 kb on - strand, within AO353_02530at 538.570 kb on - strand, within AO353_02530at 538.570 kb on - strand, within AO353_02530at 538.572 kb on + strand, within AO353_02530at 538.572 kb on + strand, within AO353_02530at 538.572 kb on + strand, within AO353_02530at 538.572 kb on + strand, within AO353_02530at 538.572 kb on + strand, within AO353_02530at 538.572 kb on + strand, within AO353_02530at 538.572 kb on + strand, within AO353_02530at 538.572 kb on + strand, within AO353_02530at 538.572 kb on + strand, within AO353_02530at 538.572 kb on + strand, within AO353_02530at 538.573 kb on - strand, within AO353_02530at 538.573 kb on - strand, within AO353_02530at 538.573 kb on - strand, within AO353_02530at 538.704 kb on + strand, within AO353_02530at 538.704 kb on + strandat 538.704 kb on + strand, within AO353_02530at 538.705 kb on - strand, within AO353_02530at 538.770 kb on + strand, within AO353_02530at 538.771 kb on - strand, within AO353_02530at 538.771 kb on - strand, within AO353_02530at 538.771 kb on - strand, within AO353_02530at 538.771 kb on - strand, within AO353_02530at 538.771 kb on - strand, within AO353_02530at 538.771 kb on - strand, within AO353_02530at 538.771 kb on - strand, within AO353_02530at 538.771 kb on - strand, within AO353_02530at 538.778 kb on + strand, within AO353_02530at 538.778 kb on + strand, within AO353_02530at 538.778 kb on + strand, within AO353_02530at 538.778 kb on + strand, within AO353_02530at 538.779 kb on - strand, within AO353_02530at 538.779 kb on - strand, within AO353_02530at 538.779 kb on - strand, within AO353_02530at 538.779 kb on - strandat 538.779 kb on - strand, within AO353_02530at 538.779 kb on - strand, within AO353_02530at 538.956 kb on + strand, within AO353_02530at 538.957 kb on - strand, within AO353_02530at 538.957 kb on - strand, within AO353_02530at 538.957 kb on - strand, within AO353_02530at 538.971 kb on + strand, within AO353_02530at 538.971 kb on + strand, within AO353_02530

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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537,351 - AO353_02520 0.72 -0.5
537,351 - AO353_02520 0.72 -0.8
537,351 - AO353_02520 0.72 -0.4
537,375 + AO353_02520 0.75 -1.8
537,375 + AO353_02520 0.75 -1.4
537,558 + +1.0
537,558 + -1.0
537,558 + -1.0
537,559 - -0.4
537,559 - -0.9
537,559 - +0.0
537,559 - -0.5
537,559 - -0.4
537,559 - -0.6
537,559 - -0.2
537,626 + -1.0
537,646 + -1.5
537,647 - +0.8
537,656 + -1.1
537,656 + -0.3
537,656 + -1.4
537,656 + +3.4
537,658 + -0.5
537,658 + -1.3
537,658 + +0.9
537,659 - +1.4
537,659 - +2.0
537,659 - -1.3
537,659 - -0.2
537,698 + +1.6
537,698 + -0.3
537,698 + -0.4
537,699 - -1.4
537,699 - +0.6
537,701 + -0.2
537,701 + -0.5
537,701 + -0.3
537,701 + -1.4
537,701 + +0.6
537,701 + +0.2
537,702 - -2.3
537,702 - -0.4
537,702 - +1.9
537,702 - +0.0
537,702 - -1.0
537,702 - -0.1
537,802 + AO353_02525 0.20 -0.6
537,802 + AO353_02525 0.20 -0.4
537,803 - AO353_02525 0.20 +0.2
537,803 - AO353_02525 0.20 -1.4
537,803 - AO353_02525 0.20 +0.1
537,803 - AO353_02525 0.20 -1.1
537,803 - AO353_02525 0.20 -1.3
537,804 + AO353_02525 0.20 +0.2
537,804 + AO353_02525 0.20 -2.3
537,805 - AO353_02525 0.21 -1.4
537,805 - AO353_02525 0.21 -0.9
537,858 - AO353_02525 0.37 -0.6
537,858 - AO353_02525 0.37 -0.4
537,914 - AO353_02525 0.55 +0.1
537,914 - AO353_02525 0.55 -1.4
538,057 + -1.7
538,057 + +0.2
538,057 + +0.0
538,058 - +0.7
538,058 - +0.0
538,088 - -1.0
538,093 + +0.1
538,093 + +0.2
538,093 + -0.6
538,093 + -1.3
538,093 + -0.2
538,094 - +0.8
538,094 - -0.2
538,100 + -1.2
538,101 - +1.6
538,101 - -1.4
538,109 - +0.0
538,152 + -2.0
538,152 + -0.4
538,152 + -0.4
538,152 + +0.0
538,153 - +1.9
538,153 - -0.6
538,153 - +0.6
538,153 - +0.1
538,156 + -0.0
538,156 + -0.4
538,156 + -0.8
538,157 - -1.8
538,449 + AO353_02530 0.16 +2.0
538,449 + AO353_02530 0.16 -0.8
538,450 - AO353_02530 0.16 -1.0
538,558 + AO353_02530 0.22 -1.7
538,559 - AO353_02530 0.22 +0.4
538,559 - +3.4
538,559 - AO353_02530 0.22 +1.2
538,559 - AO353_02530 0.22 -1.3
538,559 - AO353_02530 0.22 +0.1
538,559 - AO353_02530 0.22 -1.5
538,559 - AO353_02530 0.22 +0.5
538,560 + AO353_02530 0.22 -1.9
538,560 + AO353_02530 0.22 +0.3
538,560 + AO353_02530 0.22 -1.1
538,560 + AO353_02530 0.22 +1.2
538,560 + AO353_02530 0.22 +0.6
538,560 + AO353_02530 0.22 -1.2
538,560 + AO353_02530 0.22 +0.6
538,560 + AO353_02530 0.22 -1.0
538,561 - AO353_02530 0.22 +1.6
538,561 - AO353_02530 0.22 -1.1
538,561 - AO353_02530 0.22 +0.8
538,561 - AO353_02530 0.22 +0.0
538,561 - AO353_02530 0.22 +0.9
538,561 - AO353_02530 0.22 -2.1
538,561 - AO353_02530 0.22 -0.6
538,561 - AO353_02530 0.22 -0.8
538,561 - AO353_02530 0.22 -0.2
538,561 - AO353_02530 0.22 +1.6
538,569 + AO353_02530 0.22 -0.2
538,569 + AO353_02530 0.22 -1.0
538,569 + AO353_02530 0.22 -1.3
538,569 + AO353_02530 0.22 -1.0
538,569 + AO353_02530 0.22 -1.3
538,569 + AO353_02530 0.22 -1.4
538,569 + AO353_02530 0.22 +0.2
538,569 + AO353_02530 0.22 -0.4
538,569 + AO353_02530 0.22 -0.5
538,569 + AO353_02530 0.22 +0.8
538,570 - AO353_02530 0.22 -1.3
538,570 - AO353_02530 0.22 +0.2
538,570 - AO353_02530 0.22 +1.0
538,570 - AO353_02530 0.22 +0.8
538,570 - AO353_02530 0.22 -2.3
538,572 + AO353_02530 0.22 +1.2
538,572 + AO353_02530 0.22 -1.1
538,572 + AO353_02530 0.22 +1.4
538,572 + AO353_02530 0.22 -1.2
538,572 + AO353_02530 0.22 +0.1
538,572 + AO353_02530 0.22 -0.6
538,572 + AO353_02530 0.22 -0.9
538,572 + AO353_02530 0.22 -1.3
538,572 + AO353_02530 0.22 -0.2
538,572 + AO353_02530 0.22 +0.0
538,573 - AO353_02530 0.23 -0.3
538,573 - AO353_02530 0.23 -1.2
538,573 - AO353_02530 0.23 +0.2
538,704 + AO353_02530 0.29 -1.4
538,704 + +2.4
538,704 + AO353_02530 0.29 +0.4
538,705 - AO353_02530 0.30 -0.6
538,770 + AO353_02530 0.33 -0.1
538,771 - AO353_02530 0.33 +0.9
538,771 - AO353_02530 0.33 -0.6
538,771 - AO353_02530 0.33 +0.8
538,771 - AO353_02530 0.33 +0.4
538,771 - AO353_02530 0.33 -0.8
538,771 - AO353_02530 0.33 -0.1
538,771 - AO353_02530 0.33 -2.3
538,771 - AO353_02530 0.33 -0.4
538,778 + AO353_02530 0.33 +0.4
538,778 + AO353_02530 0.33 +0.6
538,778 + AO353_02530 0.33 -1.6
538,778 + AO353_02530 0.33 -1.3
538,779 - AO353_02530 0.33 -1.2
538,779 - AO353_02530 0.33 +1.5
538,779 - AO353_02530 0.33 -1.3
538,779 - +0.6
538,779 - AO353_02530 0.33 -1.0
538,779 - AO353_02530 0.33 +0.7
538,956 + AO353_02530 0.43 -1.2
538,957 - AO353_02530 0.43 -1.3
538,957 - AO353_02530 0.43 +0.4
538,957 - AO353_02530 0.43 -0.3
538,971 + AO353_02530 0.44 -1.4
538,971 + AO353_02530 0.44 -1.5

Or see this region's nucleotide sequence