Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02190 and AO353_02195 are separated by 314 nucleotides AO353_02195 and AO353_02200 are separated by 264 nucleotides AO353_02200 and AO353_02205 are separated by 88 nucleotides
AO353_02190: AO353_02190 - hypothetical protein, at 469,557 to 471,650
_02190
AO353_02195: AO353_02195 - spermidine synthase, at 471,965 to 472,840
_02195
AO353_02200: AO353_02200 - hypothetical protein, at 473,105 to 473,296
_02200
AO353_02205: AO353_02205 - hypothetical protein, at 473,385 to 473,915
_02205
Position (kb) 471
472
473 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 471.066 kb on + strand, within AO353_02190 at 471.202 kb on + strand, within AO353_02190 at 471.203 kb on - strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.400 kb on - strand, within AO353_02190 at 471.415 kb on + strand, within AO353_02190 at 471.415 kb on + strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.505 kb on + strand at 471.505 kb on + strand at 471.505 kb on + strand at 471.505 kb on + strand at 471.505 kb on + strand at 471.571 kb on + strand at 471.572 kb on - strand at 471.572 kb on - strand at 471.572 kb on - strand at 471.629 kb on + strand at 471.630 kb on - strand at 471.657 kb on + strand at 471.658 kb on - strand at 471.659 kb on + strand at 471.660 kb on - strand at 471.660 kb on - strand at 471.660 kb on - strand at 471.660 kb on - strand at 471.719 kb on + strand at 471.719 kb on + strand at 471.720 kb on - strand at 471.720 kb on - strand at 471.720 kb on - strand at 471.792 kb on + strand at 471.792 kb on + strand at 471.793 kb on - strand at 471.861 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.916 kb on + strand at 471.916 kb on + strand at 471.917 kb on - strand at 471.966 kb on + strand at 471.966 kb on + strand at 471.967 kb on - strand at 471.973 kb on + strand at 471.973 kb on + strand at 471.974 kb on - strand at 471.974 kb on - strand at 471.974 kb on - strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.003 kb on - strand at 472.027 kb on + strand at 472.028 kb on - strand at 472.044 kb on + strand at 472.044 kb on + strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.048 kb on - strand at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.180 kb on - strand, within AO353_02195 at 472.276 kb on + strand, within AO353_02195 at 472.311 kb on + strand, within AO353_02195 at 472.312 kb on - strand, within AO353_02195 at 472.647 kb on + strand, within AO353_02195 at 472.647 kb on + strand, within AO353_02195 at 472.648 kb on - strand, within AO353_02195 at 472.648 kb on - strand, within AO353_02195 at 472.648 kb on - strand, within AO353_02195 at 472.816 kb on - strand at 472.944 kb on + strand at 472.944 kb on + strand at 472.944 kb on + strand at 472.945 kb on - strand at 472.945 kb on - strand at 472.990 kb on + strand at 472.990 kb on + strand at 472.990 kb on + strand at 472.991 kb on - strand at 473.000 kb on + strand at 473.084 kb on + strand at 473.084 kb on + strand at 473.107 kb on - strand at 473.107 kb on - strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.114 kb on + strand at 473.115 kb on - strand at 473.115 kb on - strand at 473.115 kb on - strand at 473.115 kb on - strand at 473.115 kb on - strand at 473.115 kb on - strand at 473.115 kb on - strand at 473.115 kb on - strand at 473.146 kb on + strand, within AO353_02200 at 473.146 kb on + strand, within AO353_02200 at 473.146 kb on + strand, within AO353_02200 at 473.147 kb on - strand, within AO353_02200 at 473.221 kb on + strand, within AO353_02200 at 473.221 kb on + strand, within AO353_02200 at 473.221 kb on + strand, within AO353_02200 at 473.221 kb on + strand, within AO353_02200 at 473.222 kb on - strand, within AO353_02200 at 473.222 kb on - strand, within AO353_02200 at 473.222 kb on - strand, within AO353_02200 at 473.222 kb on - strand, within AO353_02200 at 473.245 kb on + strand, within AO353_02200 at 473.246 kb on - strand, within AO353_02200 at 473.360 kb on + strand at 473.361 kb on - strand at 473.363 kb on + strand at 473.387 kb on - strand at 473.482 kb on + strand, within AO353_02205 at 473.483 kb on - strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.689 kb on + strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.690 kb on - strand, within AO353_02205 at 473.733 kb on + strand, within AO353_02205 at 473.734 kb on - strand, within AO353_02205 at 473.773 kb on + strand, within AO353_02205 at 473.773 kb on + strand, within AO353_02205 at 473.774 kb on - strand, within AO353_02205 at 473.774 kb on - strand, within AO353_02205 at 473.818 kb on + strand, within AO353_02205 at 473.818 kb on + strand, within AO353_02205 at 473.818 kb on + strand, within AO353_02205 at 473.819 kb on - strand, within AO353_02205
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 471,066 + AO353_02190 0.72 -1.0 471,202 + AO353_02190 0.79 +0.9 471,203 - AO353_02190 0.79 -0.2 471,244 + AO353_02190 0.81 +0.2 471,244 + AO353_02190 0.81 -0.2 471,244 + AO353_02190 0.81 +0.0 471,244 + AO353_02190 0.81 -1.9 471,245 - AO353_02190 0.81 -1.3 471,245 - AO353_02190 0.81 +1.5 471,245 - AO353_02190 0.81 -0.9 471,245 - AO353_02190 0.81 -0.6 471,399 + AO353_02190 0.88 +0.9 471,399 + AO353_02190 0.88 +0.9 471,399 + AO353_02190 0.88 -0.5 471,399 + AO353_02190 0.88 -0.5 471,400 - AO353_02190 0.88 -0.5 471,415 + AO353_02190 0.89 -0.2 471,415 + AO353_02190 0.89 +0.0 471,416 - AO353_02190 0.89 -0.2 471,416 - AO353_02190 0.89 -0.8 471,416 - AO353_02190 0.89 +0.0 471,416 - AO353_02190 0.89 -1.6 471,416 - AO353_02190 0.89 -1.2 471,505 + -1.4 471,505 + +1.4 471,505 + -1.1 471,505 + -1.1 471,505 + +1.0 471,571 + -2.4 471,572 - -0.0 471,572 - +0.4 471,572 - -1.6 471,629 + +1.6 471,630 - +0.2 471,657 + +0.1 471,658 - -0.2 471,659 + -0.4 471,660 - -0.5 471,660 - -1.0 471,660 - +0.6 471,660 - -0.6 471,719 + -1.4 471,719 + -0.5 471,720 - -1.2 471,720 - -0.6 471,720 - -2.1 471,792 + -0.8 471,792 + -0.5 471,793 - -1.2 471,861 + +0.6 471,914 + -1.1 471,914 + -0.4 471,914 + -0.8 471,914 + +0.2 471,914 + -0.3 471,914 + -0.1 471,914 + +1.1 471,914 + +0.2 471,914 + +0.8 471,915 - -1.3 471,915 - -0.9 471,915 - -0.6 471,915 - -1.3 471,915 - -0.2 471,915 - -0.6 471,915 - -1.9 471,915 - -0.3 471,915 - -1.4 471,915 - -1.1 471,915 - -1.2 471,916 + +1.4 471,916 + +1.0 471,917 - +0.6 471,966 + +1.4 471,966 + +0.2 471,967 - -1.1 471,973 + +0.6 471,973 + +0.4 471,974 - -0.0 471,974 - +0.8 471,974 - -0.8 472,002 + +2.6 472,002 + +2.0 472,002 + +2.4 472,002 + +1.2 472,002 + +0.4 472,003 - +4.4 472,027 + +2.0 472,028 - +1.4 472,044 + +2.4 472,044 + +2.4 472,045 - +1.6 472,045 - +0.4 472,045 - +0.2 472,045 - +2.2 472,045 - +1.0 472,048 - +0.0 472,158 + AO353_02195 0.22 +3.6 472,158 + AO353_02195 0.22 +1.0 472,158 + AO353_02195 0.22 +3.3 472,158 + AO353_02195 0.22 +2.9 472,158 + AO353_02195 0.22 +0.6 472,158 + AO353_02195 0.22 +1.9 472,158 + AO353_02195 0.22 +2.6 472,180 - AO353_02195 0.25 +1.0 472,276 + AO353_02195 0.36 +2.2 472,311 + AO353_02195 0.39 +1.5 472,312 - AO353_02195 0.40 +1.7 472,647 + AO353_02195 0.78 +0.2 472,647 + AO353_02195 0.78 +1.4 472,648 - AO353_02195 0.78 +1.0 472,648 - AO353_02195 0.78 +1.5 472,648 - AO353_02195 0.78 +1.2 472,816 - +1.7 472,944 + -0.6 472,944 + +0.1 472,944 + -0.5 472,945 - +0.2 472,945 - -0.6 472,990 + -0.2 472,990 + -0.2 472,990 + -0.3 472,991 - -1.1 473,000 + +0.9 473,084 + +0.0 473,084 + -0.2 473,107 - +1.4 473,107 - -0.6 473,114 + -0.4 473,114 + -0.8 473,114 + +0.4 473,114 + -1.0 473,114 + +0.8 473,114 + -1.6 473,114 + +0.0 473,114 + -0.3 473,114 + +1.5 473,115 - -0.2 473,115 - +1.2 473,115 - +0.8 473,115 - +1.8 473,115 - +1.9 473,115 - -1.5 473,115 - -0.1 473,115 - +0.7 473,146 + AO353_02200 0.21 -0.1 473,146 + AO353_02200 0.21 +0.0 473,146 + AO353_02200 0.21 -1.1 473,147 - AO353_02200 0.22 +0.8 473,221 + AO353_02200 0.60 -1.1 473,221 + AO353_02200 0.60 +0.1 473,221 + AO353_02200 0.60 +0.8 473,221 + AO353_02200 0.60 -1.1 473,222 - AO353_02200 0.61 +0.4 473,222 - AO353_02200 0.61 +0.4 473,222 - AO353_02200 0.61 -1.6 473,222 - AO353_02200 0.61 +0.1 473,245 + AO353_02200 0.73 -0.3 473,246 - AO353_02200 0.73 -1.0 473,360 + -0.8 473,361 - +0.2 473,363 + +1.8 473,387 - +0.6 473,482 + AO353_02205 0.18 +1.1 473,483 - AO353_02205 0.18 -0.4 473,689 + AO353_02205 0.57 +1.4 473,689 + AO353_02205 0.57 -1.8 473,689 + AO353_02205 0.57 -0.4 473,689 + AO353_02205 0.57 +0.8 473,689 + AO353_02205 0.57 -0.2 473,689 + AO353_02205 0.57 +0.0 473,689 + AO353_02205 0.57 +0.6 473,689 + AO353_02205 0.57 +1.9 473,689 + AO353_02205 0.57 +0.8 473,689 + AO353_02205 0.57 +2.0 473,690 - AO353_02205 0.57 +0.7 473,690 - AO353_02205 0.57 +0.8 473,690 - AO353_02205 0.57 +0.0 473,690 - AO353_02205 0.57 +0.5 473,690 - AO353_02205 0.57 +1.4 473,690 - AO353_02205 0.57 +0.1 473,690 - AO353_02205 0.57 +1.9 473,690 - AO353_02205 0.57 +0.4 473,690 - AO353_02205 0.57 -1.2 473,690 - AO353_02205 0.57 -0.5 473,733 + AO353_02205 0.66 -1.1 473,734 - AO353_02205 0.66 -0.2 473,773 + AO353_02205 0.73 -1.6 473,773 + AO353_02205 0.73 -1.2 473,774 - AO353_02205 0.73 +1.8 473,774 - AO353_02205 0.73 +1.6 473,818 + AO353_02205 0.82 -1.0 473,818 + AO353_02205 0.82 -0.2 473,818 + AO353_02205 0.82 +1.6 473,819 - AO353_02205 0.82 -1.0
Or see this region's nucleotide sequence