Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02175

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02165 and AO353_02170 are separated by 78 nucleotidesAO353_02170 and AO353_02175 are separated by 37 nucleotidesAO353_02175 and AO353_02180 are separated by 141 nucleotidesAO353_02180 and AO353_02185 are separated by 64 nucleotides AO353_02165: AO353_02165 - FAD-dependent cmnm(5)s(2)U34 oxidoreductase, at 465,457 to 467,451 _02165 AO353_02170: AO353_02170 - hypothetical protein, at 467,530 to 467,757 _02170 AO353_02175: AO353_02175 - carbon storage regulator, at 467,795 to 467,980 _02175 AO353_02180: AO353_02180 - hypothetical protein, at 468,122 to 468,454 _02180 AO353_02185: AO353_02185 - short-chain dehydrogenase, at 468,519 to 469,334 _02185 Position (kb) 467 468Strain fitness (log2 ratio) -2 -1 0 1 2at 466.824 kb on - strand, within AO353_02165at 466.824 kb on - strand, within AO353_02165at 466.824 kb on - strand, within AO353_02165at 466.960 kb on + strand, within AO353_02165at 466.960 kb on + strand, within AO353_02165at 466.960 kb on + strand, within AO353_02165at 466.960 kb on + strand, within AO353_02165at 466.960 kb on + strand, within AO353_02165at 466.961 kb on - strand, within AO353_02165at 466.961 kb on - strand, within AO353_02165at 467.078 kb on + strand, within AO353_02165at 467.079 kb on - strand, within AO353_02165at 467.132 kb on + strand, within AO353_02165at 467.132 kb on + strand, within AO353_02165at 467.132 kb on + strand, within AO353_02165at 467.132 kb on + strand, within AO353_02165at 467.132 kb on + strand, within AO353_02165at 467.132 kb on + strand, within AO353_02165at 467.133 kb on - strand, within AO353_02165at 467.133 kb on - strand, within AO353_02165at 467.133 kb on - strand, within AO353_02165at 467.133 kb on - strand, within AO353_02165at 467.133 kb on - strand, within AO353_02165at 467.170 kb on + strand, within AO353_02165at 467.170 kb on + strand, within AO353_02165at 467.171 kb on - strand, within AO353_02165at 467.221 kb on + strand, within AO353_02165at 467.287 kb on + strandat 467.287 kb on + strandat 467.287 kb on + strandat 467.287 kb on + strandat 467.287 kb on + strandat 467.287 kb on + strandat 467.287 kb on + strandat 467.287 kb on + strandat 467.288 kb on - strandat 467.288 kb on - strandat 467.288 kb on - strandat 467.288 kb on - strandat 467.288 kb on - strandat 467.288 kb on - strandat 467.288 kb on - strandat 467.288 kb on - strandat 467.288 kb on - strandat 467.288 kb on - strandat 467.288 kb on - strandat 467.498 kb on + strandat 467.529 kb on + strandat 467.529 kb on + strandat 467.529 kb on + strandat 467.529 kb on + strandat 467.529 kb on + strandat 467.530 kb on - strandat 467.530 kb on - strandat 467.530 kb on - strandat 467.779 kb on + strandat 467.779 kb on + strandat 467.779 kb on + strandat 467.779 kb on + strandat 467.780 kb on - strandat 467.780 kb on - strandat 467.791 kb on + strandat 467.792 kb on - strandat 467.792 kb on - strandat 467.792 kb on - strandat 467.813 kb on + strandat 467.813 kb on + strandat 467.814 kb on - strand, within AO353_02175at 467.814 kb on - strand, within AO353_02175at 467.814 kb on - strand, within AO353_02175at 467.814 kb on - strand, within AO353_02175at 467.838 kb on + strand, within AO353_02175at 467.839 kb on - strand, within AO353_02175at 467.972 kb on + strandat 467.986 kb on + strandat 467.986 kb on + strandat 467.986 kb on + strandat 467.986 kb on + strandat 467.986 kb on + strandat 467.986 kb on + strandat 467.987 kb on - strandat 467.987 kb on - strandat 467.987 kb on - strandat 467.999 kb on + strandat 468.035 kb on + strandat 468.035 kb on + strandat 468.035 kb on + strandat 468.036 kb on - strandat 468.036 kb on - strandat 468.036 kb on - strandat 468.036 kb on - strandat 468.036 kb on - strandat 468.068 kb on - strandat 468.089 kb on + strandat 468.090 kb on - strandat 468.090 kb on - strandat 468.168 kb on - strand, within AO353_02180at 468.168 kb on - strand, within AO353_02180at 468.170 kb on + strand, within AO353_02180at 468.171 kb on - strand, within AO353_02180at 468.171 kb on - strand, within AO353_02180at 468.255 kb on + strand, within AO353_02180at 468.255 kb on + strand, within AO353_02180at 468.255 kb on + strand, within AO353_02180at 468.255 kb on + strand, within AO353_02180at 468.255 kb on + strand, within AO353_02180at 468.255 kb on + strand, within AO353_02180at 468.256 kb on - strand, within AO353_02180at 468.256 kb on - strand, within AO353_02180at 468.256 kb on - strand, within AO353_02180at 468.256 kb on - strand, within AO353_02180at 468.256 kb on - strand, within AO353_02180at 468.256 kb on - strand, within AO353_02180at 468.256 kb on - strand, within AO353_02180at 468.256 kb on - strand, within AO353_02180at 468.256 kb on - strand, within AO353_02180at 468.256 kb on - strand, within AO353_02180at 468.256 kb on - strand, within AO353_02180at 468.256 kb on - strand, within AO353_02180at 468.256 kb on - strand, within AO353_02180at 468.267 kb on + strand, within AO353_02180at 468.268 kb on - strand, within AO353_02180at 468.277 kb on - strand, within AO353_02180at 468.277 kb on - strand, within AO353_02180at 468.291 kb on + strand, within AO353_02180at 468.291 kb on + strand, within AO353_02180at 468.444 kb on + strandat 468.444 kb on + strandat 468.445 kb on - strandat 468.445 kb on - strandat 468.445 kb on - strandat 468.508 kb on + strandat 468.580 kb on + strandat 468.581 kb on - strandat 468.581 kb on - strandat 468.581 kb on - strandat 468.673 kb on + strand, within AO353_02185at 468.673 kb on + strand, within AO353_02185at 468.673 kb on + strand, within AO353_02185at 468.673 kb on + strand, within AO353_02185at 468.673 kb on + strand, within AO353_02185at 468.673 kb on + strand, within AO353_02185at 468.673 kb on + strand, within AO353_02185at 468.673 kb on + strand, within AO353_02185at 468.673 kb on + strand, within AO353_02185at 468.673 kb on + strand, within AO353_02185at 468.673 kb on + strand, within AO353_02185at 468.673 kb on + strand, within AO353_02185at 468.674 kb on - strand, within AO353_02185at 468.674 kb on - strand, within AO353_02185at 468.674 kb on - strand, within AO353_02185at 468.679 kb on + strand, within AO353_02185at 468.679 kb on + strand, within AO353_02185at 468.679 kb on + strand, within AO353_02185at 468.679 kb on + strand, within AO353_02185at 468.679 kb on + strand, within AO353_02185at 468.679 kb on + strand, within AO353_02185at 468.679 kb on + strand, within AO353_02185at 468.679 kb on + strand, within AO353_02185at 468.680 kb on - strand, within AO353_02185at 468.680 kb on - strand, within AO353_02185at 468.680 kb on - strand, within AO353_02185at 468.680 kb on - strand, within AO353_02185at 468.680 kb on - strand, within AO353_02185at 468.690 kb on - strand, within AO353_02185at 468.886 kb on + strand, within AO353_02185at 468.886 kb on + strand, within AO353_02185at 468.886 kb on + strand, within AO353_02185at 468.887 kb on - strand, within AO353_02185at 468.887 kb on - strand, within AO353_02185at 468.887 kb on - strand, within AO353_02185at 468.887 kb on - strand, within AO353_02185at 468.887 kb on - strand, within AO353_02185at 468.887 kb on - strand, within AO353_02185at 468.887 kb on - strand, within AO353_02185at 468.887 kb on - strand, within AO353_02185at 468.950 kb on + strand, within AO353_02185

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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466,824 - AO353_02165 0.69 +2.3
466,824 - AO353_02165 0.69 -0.6
466,824 - AO353_02165 0.69 -0.8
466,960 + AO353_02165 0.75 -0.9
466,960 + AO353_02165 0.75 -0.6
466,960 + AO353_02165 0.75 -0.2
466,960 + AO353_02165 0.75 +1.4
466,960 + AO353_02165 0.75 -1.2
466,961 - AO353_02165 0.75 +0.5
466,961 - AO353_02165 0.75 -0.2
467,078 + AO353_02165 0.81 +0.1
467,079 - AO353_02165 0.81 -1.8
467,132 + AO353_02165 0.84 +0.8
467,132 + AO353_02165 0.84 -0.2
467,132 + AO353_02165 0.84 +0.2
467,132 + AO353_02165 0.84 +1.3
467,132 + AO353_02165 0.84 -1.5
467,132 + AO353_02165 0.84 +0.6
467,133 - AO353_02165 0.84 +0.3
467,133 - AO353_02165 0.84 -1.4
467,133 - AO353_02165 0.84 +0.6
467,133 - AO353_02165 0.84 +0.9
467,133 - AO353_02165 0.84 +1.1
467,170 + AO353_02165 0.86 -1.7
467,170 + AO353_02165 0.86 -1.0
467,171 - AO353_02165 0.86 +1.4
467,221 + AO353_02165 0.88 -0.2
467,287 + +0.5
467,287 + -2.4
467,287 + -0.5
467,287 + -0.2
467,287 + +0.2
467,287 + +1.9
467,287 + +1.6
467,287 + -0.2
467,288 - +0.9
467,288 - +0.0
467,288 - -1.2
467,288 - -1.5
467,288 - +0.4
467,288 - -0.2
467,288 - +1.4
467,288 - +1.0
467,288 - -0.2
467,288 - +0.7
467,288 - -1.5
467,498 + -1.5
467,529 + -0.5
467,529 + -0.6
467,529 + -1.7
467,529 + +0.4
467,529 + -0.2
467,530 - -0.2
467,530 - -0.2
467,530 - +0.9
467,779 + -0.2
467,779 + -0.7
467,779 + +0.7
467,779 + +1.0
467,780 - -1.2
467,780 - +0.2
467,791 + +0.0
467,792 - -1.0
467,792 - -1.1
467,792 - -0.8
467,813 + -0.2
467,813 + -1.1
467,814 - AO353_02175 0.10 +1.1
467,814 - AO353_02175 0.10 -1.9
467,814 - AO353_02175 0.10 -1.2
467,814 - AO353_02175 0.10 -1.1
467,838 + AO353_02175 0.23 -0.6
467,839 - AO353_02175 0.24 +1.4
467,972 + -0.6
467,986 + +0.4
467,986 + -0.2
467,986 + +1.2
467,986 + -0.3
467,986 + +0.0
467,986 + +0.0
467,987 - -1.2
467,987 - -1.2
467,987 - +0.5
467,999 + -1.2
468,035 + -1.5
468,035 + -0.6
468,035 + +1.3
468,036 - +0.3
468,036 - -0.2
468,036 - -1.6
468,036 - +0.4
468,036 - +0.6
468,068 - +0.7
468,089 + -0.5
468,090 - +0.0
468,090 - +1.4
468,168 - AO353_02180 0.14 +0.4
468,168 - AO353_02180 0.14 -2.3
468,170 + AO353_02180 0.14 +0.3
468,171 - AO353_02180 0.15 -1.1
468,171 - AO353_02180 0.15 -0.2
468,255 + AO353_02180 0.40 +1.8
468,255 + AO353_02180 0.40 -0.3
468,255 + AO353_02180 0.40 -0.5
468,255 + AO353_02180 0.40 -0.6
468,255 + AO353_02180 0.40 -0.1
468,255 + AO353_02180 0.40 -0.2
468,256 - AO353_02180 0.40 -1.3
468,256 - AO353_02180 0.40 +1.7
468,256 - AO353_02180 0.40 -0.1
468,256 - AO353_02180 0.40 -0.3
468,256 - AO353_02180 0.40 -1.1
468,256 - AO353_02180 0.40 -0.2
468,256 - AO353_02180 0.40 -0.2
468,256 - AO353_02180 0.40 +1.4
468,256 - AO353_02180 0.40 -0.6
468,256 - AO353_02180 0.40 -0.3
468,256 - AO353_02180 0.40 +0.1
468,256 - AO353_02180 0.40 -0.2
468,256 - AO353_02180 0.40 +0.8
468,267 + AO353_02180 0.44 -0.7
468,268 - AO353_02180 0.44 -1.7
468,277 - AO353_02180 0.47 +0.7
468,277 - AO353_02180 0.47 -0.8
468,291 + AO353_02180 0.51 +0.8
468,291 + AO353_02180 0.51 -1.6
468,444 + -1.2
468,444 + -1.3
468,445 - -0.4
468,445 - -1.7
468,445 - -1.2
468,508 + -0.2
468,580 + -0.8
468,581 - +0.4
468,581 - -0.1
468,581 - -1.6
468,673 + AO353_02185 0.19 +0.0
468,673 + AO353_02185 0.19 +1.8
468,673 + AO353_02185 0.19 -0.8
468,673 + AO353_02185 0.19 +2.4
468,673 + AO353_02185 0.19 +0.2
468,673 + AO353_02185 0.19 +1.4
468,673 + AO353_02185 0.19 -0.2
468,673 + AO353_02185 0.19 -0.8
468,673 + AO353_02185 0.19 -0.1
468,673 + AO353_02185 0.19 -1.5
468,673 + AO353_02185 0.19 -1.2
468,673 + AO353_02185 0.19 -0.8
468,674 - AO353_02185 0.19 +1.0
468,674 - AO353_02185 0.19 -0.3
468,674 - AO353_02185 0.19 -1.1
468,679 + AO353_02185 0.20 -0.1
468,679 + AO353_02185 0.20 +0.0
468,679 + AO353_02185 0.20 -0.1
468,679 + AO353_02185 0.20 +0.0
468,679 + AO353_02185 0.20 +0.2
468,679 + AO353_02185 0.20 +0.6
468,679 + AO353_02185 0.20 -1.7
468,679 + AO353_02185 0.20 -0.1
468,680 - AO353_02185 0.20 +0.1
468,680 - AO353_02185 0.20 -0.9
468,680 - AO353_02185 0.20 -1.7
468,680 - AO353_02185 0.20 -2.3
468,680 - AO353_02185 0.20 +0.8
468,690 - AO353_02185 0.21 -0.2
468,886 + AO353_02185 0.45 +0.0
468,886 + AO353_02185 0.45 +1.4
468,886 + AO353_02185 0.45 +0.0
468,887 - AO353_02185 0.45 -1.0
468,887 - AO353_02185 0.45 -0.6
468,887 - AO353_02185 0.45 -0.9
468,887 - AO353_02185 0.45 -0.5
468,887 - AO353_02185 0.45 -1.8
468,887 - AO353_02185 0.45 -0.3
468,887 - AO353_02185 0.45 +0.4
468,887 - AO353_02185 0.45 -0.5
468,950 + AO353_02185 0.53 +0.6

Or see this region's nucleotide sequence