Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02090 and AO353_02095 are separated by 63 nucleotides AO353_02095 and AO353_02100 are separated by 4 nucleotides AO353_02100 and AO353_02105 are separated by 175 nucleotides
AO353_02090: AO353_02090 - N-ethylammeline chlorohydrolase, at 447,614 to 448,945
_02090
AO353_02095: AO353_02095 - 3-demethylubiquinone-9 3-methyltransferase, at 449,009 to 449,707
_02095
AO353_02100: AO353_02100 - phosphoglycolate phosphatase, at 449,712 to 450,383
_02100
AO353_02105: AO353_02105 - 3-oxoacyl-ACP reductase, at 450,559 to 451,299
_02105
Position (kb) 449
450 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 448.010 kb on + strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.425 kb on + strand, within AO353_02090 at 448.432 kb on + strand, within AO353_02090 at 448.432 kb on + strand, within AO353_02090 at 448.433 kb on - strand, within AO353_02090 at 448.433 kb on - strand, within AO353_02090 at 448.795 kb on + strand, within AO353_02090 at 448.795 kb on + strand, within AO353_02090 at 448.795 kb on + strand, within AO353_02090 at 448.795 kb on + strand, within AO353_02090 at 448.795 kb on + strand, within AO353_02090 at 448.796 kb on - strand, within AO353_02090 at 448.796 kb on - strand, within AO353_02090 at 448.796 kb on - strand, within AO353_02090 at 448.796 kb on - strand, within AO353_02090 at 448.799 kb on + strand, within AO353_02090 at 448.799 kb on + strand, within AO353_02090 at 448.799 kb on + strand, within AO353_02090 at 448.800 kb on - strand, within AO353_02090 at 448.800 kb on - strand, within AO353_02090 at 448.800 kb on - strand, within AO353_02090 at 448.893 kb on + strand at 448.893 kb on + strand at 448.893 kb on + strand at 448.894 kb on - strand at 448.894 kb on - strand at 448.894 kb on - strand at 448.894 kb on - strand at 448.894 kb on - strand at 448.894 kb on - strand at 448.894 kb on - strand at 448.894 kb on - strand at 448.943 kb on + strand at 448.944 kb on - strand at 448.944 kb on - strand at 448.996 kb on + strand at 448.996 kb on + strand at 448.996 kb on + strand at 448.996 kb on + strand at 448.996 kb on + strand at 448.997 kb on - strand at 448.997 kb on - strand at 449.004 kb on + strand at 449.705 kb on + strand at 449.705 kb on + strand at 449.705 kb on + strand at 449.706 kb on - strand at 450.160 kb on + strand, within AO353_02100 at 450.160 kb on + strand, within AO353_02100 at 450.161 kb on - strand, within AO353_02100 at 450.161 kb on - strand, within AO353_02100 at 450.279 kb on + strand, within AO353_02100 at 450.279 kb on + strand, within AO353_02100 at 450.279 kb on + strand, within AO353_02100 at 450.279 kb on + strand, within AO353_02100 at 450.280 kb on - strand, within AO353_02100 at 450.374 kb on + strand at 450.374 kb on + strand at 450.374 kb on + strand at 450.375 kb on - strand at 450.375 kb on - strand at 450.375 kb on - strand at 450.375 kb on - strand at 450.375 kb on - strand at 450.375 kb on - strand at 450.375 kb on - strand at 450.386 kb on + strand at 450.386 kb on + strand at 450.387 kb on - strand at 450.387 kb on - strand at 450.387 kb on - strand at 450.387 kb on - strand at 450.449 kb on + strand at 450.449 kb on + strand at 450.449 kb on + strand at 450.558 kb on + strand at 450.558 kb on + strand at 450.656 kb on - strand, within AO353_02105
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 448,010 + AO353_02090 0.30 -2.2 448,011 - AO353_02090 0.30 +2.5 448,011 - AO353_02090 0.30 -0.2 448,011 - AO353_02090 0.30 +2.6 448,011 - AO353_02090 0.30 +1.8 448,011 - AO353_02090 0.30 +1.9 448,011 - AO353_02090 0.30 +2.2 448,011 - AO353_02090 0.30 +1.5 448,143 + AO353_02090 0.40 -1.4 448,143 + AO353_02090 0.40 -1.0 448,143 + AO353_02090 0.40 -0.9 448,143 + AO353_02090 0.40 +0.6 448,143 + AO353_02090 0.40 +0.1 448,203 - AO353_02090 0.44 +2.8 448,203 - AO353_02090 0.44 +1.1 448,203 - AO353_02090 0.44 +0.7 448,203 - AO353_02090 0.44 +0.6 448,203 - AO353_02090 0.44 +1.6 448,425 + AO353_02090 0.61 +0.9 448,432 + AO353_02090 0.61 +1.9 448,432 + AO353_02090 0.61 +1.6 448,433 - AO353_02090 0.61 +2.7 448,433 - AO353_02090 0.61 +0.1 448,795 + AO353_02090 0.89 +0.6 448,795 + AO353_02090 0.89 +0.1 448,795 + AO353_02090 0.89 +0.0 448,795 + AO353_02090 0.89 -0.5 448,795 + AO353_02090 0.89 +1.4 448,796 - AO353_02090 0.89 +1.3 448,796 - AO353_02090 0.89 +2.3 448,796 - AO353_02090 0.89 +2.6 448,796 - AO353_02090 0.89 +1.3 448,799 + AO353_02090 0.89 +0.6 448,799 + AO353_02090 0.89 +0.0 448,799 + AO353_02090 0.89 +1.2 448,800 - AO353_02090 0.89 +0.7 448,800 - AO353_02090 0.89 +0.3 448,800 - AO353_02090 0.89 +0.2 448,893 + +1.7 448,893 + -0.7 448,893 + +0.9 448,894 - +0.4 448,894 - +1.6 448,894 - -0.1 448,894 - -0.9 448,894 - +0.5 448,894 - +1.4 448,894 - +0.8 448,894 - +0.6 448,943 + +2.2 448,944 - +2.8 448,944 - +5.0 448,996 + +0.6 448,996 + -0.7 448,996 + +0.6 448,996 + -1.4 448,996 + +0.0 448,997 - +4.2 448,997 - +5.1 449,004 + +4.4 449,705 + -0.6 449,705 + +2.7 449,705 + -0.1 449,706 - +0.8 450,160 + AO353_02100 0.67 +1.3 450,160 + AO353_02100 0.67 -1.1 450,161 - AO353_02100 0.67 -1.4 450,161 - AO353_02100 0.67 +0.8 450,279 + AO353_02100 0.84 -0.7 450,279 + AO353_02100 0.84 -0.2 450,279 + AO353_02100 0.84 -1.4 450,279 + AO353_02100 0.84 -1.6 450,280 - AO353_02100 0.85 -1.4 450,374 + -1.7 450,374 + -0.6 450,374 + +0.3 450,375 - +0.3 450,375 - -1.3 450,375 - +0.5 450,375 - -0.4 450,375 - +1.2 450,375 - -0.8 450,375 - -0.7 450,386 + +0.8 450,386 + +1.5 450,387 - +0.1 450,387 - +1.0 450,387 - +0.8 450,387 - -0.8 450,449 + -0.8 450,449 + -1.6 450,449 + -1.1 450,558 + +0.9 450,558 + +0.7 450,656 - AO353_02105 0.13 +4.6
Or see this region's nucleotide sequence