Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02080 and AO353_02085 are separated by 404 nucleotides AO353_02085 and AO353_02090 are separated by 108 nucleotides
AO353_02080: AO353_02080 - DNA gyrase subunit A, at 443,355 to 446,024
_02080
AO353_02085: AO353_02085 - methylthioribose-1-phosphate isomerase, at 446,429 to 447,505
_02085
AO353_02090: AO353_02090 - N-ethylammeline chlorohydrolase, at 447,614 to 448,945
_02090
Position (kb) 446
447
448 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 446.118 kb on - strand at 446.136 kb on - strand at 446.136 kb on - strand at 446.156 kb on - strand at 446.156 kb on - strand at 446.156 kb on - strand at 446.176 kb on - strand at 446.176 kb on - strand at 446.221 kb on - strand at 446.244 kb on + strand at 446.244 kb on + strand at 446.244 kb on + strand at 446.244 kb on + strand at 446.244 kb on + strand at 446.244 kb on + strand at 446.244 kb on + strand at 446.244 kb on + strand at 446.245 kb on - strand at 446.245 kb on - strand at 446.245 kb on - strand at 446.245 kb on - strand at 446.245 kb on - strand at 446.245 kb on - strand at 446.245 kb on - strand at 446.248 kb on + strand at 446.248 kb on + strand at 446.249 kb on - strand at 446.249 kb on - strand at 446.249 kb on - strand at 446.249 kb on - strand at 446.249 kb on - strand at 446.249 kb on - strand at 446.288 kb on + strand at 446.288 kb on + strand at 446.289 kb on - strand at 446.289 kb on - strand at 446.289 kb on - strand at 446.289 kb on - strand at 446.322 kb on + strand at 446.322 kb on + strand at 446.323 kb on - strand at 446.323 kb on - strand at 446.323 kb on - strand at 446.379 kb on + strand at 446.379 kb on + strand at 446.380 kb on - strand at 446.408 kb on + strand at 446.408 kb on + strand at 446.409 kb on - strand at 446.409 kb on - strand at 446.409 kb on - strand at 446.409 kb on - strand at 446.409 kb on - strand at 446.724 kb on + strand, within AO353_02085 at 446.724 kb on + strand, within AO353_02085 at 446.724 kb on + strand, within AO353_02085 at 446.725 kb on - strand, within AO353_02085 at 446.725 kb on - strand, within AO353_02085 at 446.725 kb on - strand, within AO353_02085 at 446.919 kb on + strand, within AO353_02085 at 446.919 kb on + strand, within AO353_02085 at 446.974 kb on + strand, within AO353_02085 at 447.007 kb on + strand, within AO353_02085 at 447.007 kb on + strand, within AO353_02085 at 447.007 kb on + strand, within AO353_02085 at 447.007 kb on + strand, within AO353_02085 at 447.008 kb on - strand, within AO353_02085 at 447.008 kb on - strand, within AO353_02085 at 447.365 kb on - strand, within AO353_02085 at 447.391 kb on + strand, within AO353_02085 at 447.392 kb on - strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.394 kb on - strand, within AO353_02085 at 447.394 kb on - strand, within AO353_02085 at 447.394 kb on - strand, within AO353_02085 at 447.394 kb on - strand, within AO353_02085 at 447.441 kb on + strand at 447.441 kb on + strand at 447.442 kb on - strand at 447.442 kb on - strand at 447.442 kb on - strand at 447.442 kb on - strand at 447.541 kb on + strand at 447.541 kb on + strand at 447.541 kb on + strand at 447.542 kb on - strand at 447.543 kb on + strand at 447.544 kb on - strand at 447.544 kb on - strand at 447.573 kb on + strand at 447.573 kb on + strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.663 kb on + strand at 447.664 kb on - strand at 447.666 kb on + strand at 447.666 kb on + strand at 447.666 kb on + strand at 447.667 kb on - strand at 447.667 kb on - strand at 447.667 kb on - strand at 447.667 kb on - strand at 447.667 kb on - strand at 447.687 kb on + strand at 447.687 kb on + strand at 447.688 kb on - strand at 447.727 kb on + strand at 447.728 kb on - strand at 447.728 kb on - strand at 447.728 kb on - strand at 448.010 kb on + strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.425 kb on + strand, within AO353_02090 at 448.432 kb on + strand, within AO353_02090 at 448.432 kb on + strand, within AO353_02090 at 448.433 kb on - strand, within AO353_02090 at 448.433 kb on - strand, within AO353_02090
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 446,118 - +0.3 446,136 - +0.0 446,136 - -0.2 446,156 - -1.2 446,156 - +0.5 446,156 - +1.1 446,176 - -1.4 446,176 - -0.8 446,221 - +0.9 446,244 + -1.2 446,244 + +0.0 446,244 + -2.2 446,244 + +1.3 446,244 + -1.1 446,244 + -0.2 446,244 + -0.7 446,244 + -1.4 446,245 - +0.0 446,245 - +0.8 446,245 - +2.2 446,245 - +1.1 446,245 - +0.6 446,245 - +1.6 446,245 - +0.0 446,248 + -0.5 446,248 + +2.3 446,249 - +0.8 446,249 - -0.7 446,249 - +0.4 446,249 - +0.3 446,249 - +0.0 446,249 - +0.3 446,288 + -0.5 446,288 + -0.9 446,289 - -0.0 446,289 - +1.3 446,289 - +1.5 446,289 - -0.8 446,322 + -1.2 446,322 + +1.0 446,323 - +1.5 446,323 - +1.8 446,323 - -0.2 446,379 + -1.1 446,379 + -0.7 446,380 - +0.8 446,408 + -2.1 446,408 + -0.5 446,409 - -1.5 446,409 - +0.0 446,409 - -1.4 446,409 - +1.8 446,409 - -0.1 446,724 + AO353_02085 0.27 +1.0 446,724 + AO353_02085 0.27 -1.8 446,724 + AO353_02085 0.27 -0.3 446,725 - AO353_02085 0.27 -1.4 446,725 - AO353_02085 0.27 -2.4 446,725 - AO353_02085 0.27 -2.4 446,919 + AO353_02085 0.45 +1.5 446,919 + AO353_02085 0.45 -1.1 446,974 + AO353_02085 0.51 -1.0 447,007 + AO353_02085 0.54 -2.2 447,007 + AO353_02085 0.54 -2.3 447,007 + AO353_02085 0.54 -2.2 447,007 + AO353_02085 0.54 -1.1 447,008 - AO353_02085 0.54 +0.8 447,008 - AO353_02085 0.54 -1.7 447,365 - AO353_02085 0.87 -0.7 447,391 + AO353_02085 0.89 -0.8 447,392 - AO353_02085 0.89 -1.9 447,393 + AO353_02085 0.90 -0.6 447,393 + AO353_02085 0.90 -0.2 447,393 + AO353_02085 0.90 -1.0 447,393 + AO353_02085 0.90 +1.1 447,393 + AO353_02085 0.90 -1.1 447,394 - AO353_02085 0.90 -1.4 447,394 - AO353_02085 0.90 -0.2 447,394 - AO353_02085 0.90 -2.6 447,394 - AO353_02085 0.90 +0.8 447,441 + +0.0 447,441 + +1.3 447,442 - -0.9 447,442 - -0.4 447,442 - +0.0 447,442 - -0.5 447,541 + +0.3 447,541 + +0.6 447,541 + -1.4 447,542 - +1.1 447,543 + +1.3 447,544 - -0.5 447,544 - +0.3 447,573 + -0.6 447,573 + +1.1 447,574 - -0.1 447,574 - +0.9 447,574 - -1.2 447,574 - +2.6 447,574 - +1.5 447,574 - -1.0 447,574 - -1.0 447,574 - +0.4 447,586 + +0.6 447,586 + +0.0 447,586 + -0.2 447,586 + -1.0 447,586 + +1.2 447,586 + -0.6 447,587 - -0.7 447,587 - +0.2 447,587 - -0.7 447,587 - +2.0 447,587 - -0.7 447,587 - +2.3 447,587 - +1.5 447,587 - +0.8 447,587 - +0.6 447,587 - +0.2 447,587 - +1.5 447,587 - +1.6 447,587 - +1.6 447,590 + -0.7 447,590 + -2.3 447,590 + +0.8 447,590 + -0.5 447,590 + +1.2 447,590 + -2.4 447,591 - +1.1 447,591 - +0.0 447,591 - +2.6 447,591 - +0.8 447,591 - -0.2 447,591 - +1.8 447,591 - -0.7 447,591 - +1.2 447,591 - +1.5 447,591 - +1.6 447,642 + -1.1 447,642 + +2.3 447,642 + -1.9 447,642 + +0.0 447,642 + -1.7 447,642 + -1.4 447,643 - +0.5 447,643 - +1.5 447,643 - +0.8 447,643 - -0.5 447,643 - +2.5 447,643 - +2.1 447,663 + -0.3 447,664 - +1.4 447,666 + +0.3 447,666 + -1.5 447,666 + +0.3 447,667 - +2.1 447,667 - +1.5 447,667 - -1.4 447,667 - +1.4 447,667 - +2.3 447,687 + -1.1 447,687 + +0.2 447,688 - +1.0 447,727 + -0.2 447,728 - +1.5 447,728 - +0.9 447,728 - +0.6 448,010 + AO353_02090 0.30 -2.2 448,011 - AO353_02090 0.30 +2.5 448,011 - AO353_02090 0.30 -0.2 448,011 - AO353_02090 0.30 +2.6 448,011 - AO353_02090 0.30 +1.8 448,011 - AO353_02090 0.30 +1.9 448,011 - AO353_02090 0.30 +2.2 448,011 - AO353_02090 0.30 +1.5 448,143 + AO353_02090 0.40 -1.4 448,143 + AO353_02090 0.40 -1.0 448,143 + AO353_02090 0.40 -0.9 448,143 + AO353_02090 0.40 +0.6 448,143 + AO353_02090 0.40 +0.1 448,203 - AO353_02090 0.44 +2.8 448,203 - AO353_02090 0.44 +1.1 448,203 - AO353_02090 0.44 +0.7 448,203 - AO353_02090 0.44 +0.6 448,203 - AO353_02090 0.44 +1.6 448,425 + AO353_02090 0.61 +0.9 448,432 + AO353_02090 0.61 +1.9 448,432 + AO353_02090 0.61 +1.6 448,433 - AO353_02090 0.61 +2.7 448,433 - AO353_02090 0.61 +0.1
Or see this region's nucleotide sequence