Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02065

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02060 and AO353_02065 are separated by 28 nucleotidesAO353_02065 and AO353_02070 are separated by 11 nucleotides AO353_02060: AO353_02060 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 437,751 to 439,958 _02060 AO353_02065: AO353_02065 - aspartate aminotransferase, at 439,987 to 441,099 _02065 AO353_02070: AO353_02070 - prephenate dehydratase, at 441,111 to 442,205 _02070 Position (kb) 439 440 441 442Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 439.085 kb on - strand, within AO353_02060at 439.085 kb on - strand, within AO353_02060at 439.085 kb on - strand, within AO353_02060at 439.085 kb on - strand, within AO353_02060at 439.085 kb on - strand, within AO353_02060at 439.085 kb on - strand, within AO353_02060at 439.215 kb on - strand, within AO353_02060at 439.215 kb on - strand, within AO353_02060at 439.353 kb on - strand, within AO353_02060at 439.958 kb on + strandat 439.958 kb on + strandat 439.958 kb on + strandat 439.958 kb on + strandat 439.958 kb on + strandat 439.958 kb on + strandat 439.958 kb on + strandat 439.959 kb on - strandat 439.959 kb on - strandat 439.959 kb on - strandat 439.959 kb on - strandat 439.959 kb on - strandat 440.081 kb on + strandat 440.081 kb on + strandat 440.081 kb on + strandat 440.082 kb on - strandat 440.082 kb on - strandat 440.082 kb on - strandat 440.267 kb on + strand, within AO353_02065at 440.267 kb on + strand, within AO353_02065at 440.267 kb on + strand, within AO353_02065at 440.268 kb on - strand, within AO353_02065at 440.268 kb on - strand, within AO353_02065at 440.379 kb on - strand, within AO353_02065at 440.405 kb on + strand, within AO353_02065at 440.405 kb on + strand, within AO353_02065at 440.406 kb on - strand, within AO353_02065at 440.492 kb on + strand, within AO353_02065at 440.493 kb on - strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.501 kb on + strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.502 kb on - strand, within AO353_02065at 440.774 kb on + strand, within AO353_02065at 440.774 kb on + strand, within AO353_02065at 440.774 kb on + strand, within AO353_02065at 440.775 kb on - strand, within AO353_02065at 440.775 kb on - strand, within AO353_02065at 440.775 kb on - strand, within AO353_02065at 440.775 kb on - strand, within AO353_02065at 441.045 kb on - strandat 441.045 kb on - strandat 441.045 kb on - strandat 441.100 kb on + strandat 441.101 kb on - strandat 441.101 kb on - strandat 441.112 kb on + strandat 441.113 kb on - strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.146 kb on + strandat 441.147 kb on - strandat 441.147 kb on - strandat 441.147 kb on - strandat 441.189 kb on + strandat 441.190 kb on - strandat 441.235 kb on + strand, within AO353_02070at 441.235 kb on + strand, within AO353_02070at 441.235 kb on + strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.625 kb on + strand, within AO353_02070at 441.625 kb on + strand, within AO353_02070at 441.625 kb on + strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.707 kb on + strand, within AO353_02070at 441.707 kb on + strand, within AO353_02070at 441.707 kb on + strand, within AO353_02070at 441.708 kb on - strand, within AO353_02070at 441.913 kb on + strand, within AO353_02070at 442.055 kb on - strand, within AO353_02070at 442.055 kb on - strand, within AO353_02070at 442.085 kb on + strand, within AO353_02070at 442.095 kb on + strand, within AO353_02070at 442.095 kb on + strand, within AO353_02070

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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439,085 - AO353_02060 0.60 -0.5
439,085 - AO353_02060 0.60 -0.4
439,085 - AO353_02060 0.60 +3.3
439,085 - AO353_02060 0.60 +1.9
439,085 - AO353_02060 0.60 -1.1
439,085 - AO353_02060 0.60 +0.8
439,215 - AO353_02060 0.66 -0.6
439,215 - AO353_02060 0.66 +0.3
439,353 - AO353_02060 0.73 -0.8
439,958 + +0.7
439,958 + -1.1
439,958 + -1.1
439,958 + -0.1
439,958 + +0.5
439,958 + -0.7
439,958 + -1.1
439,959 - -1.3
439,959 - -0.3
439,959 - +0.6
439,959 - -2.1
439,959 - -0.4
440,081 + +0.7
440,081 + -0.3
440,081 + -0.8
440,082 - -0.2
440,082 - +0.7
440,082 - -1.3
440,267 + AO353_02065 0.25 -0.8
440,267 + AO353_02065 0.25 +1.2
440,267 + AO353_02065 0.25 -0.3
440,268 - AO353_02065 0.25 +0.5
440,268 - AO353_02065 0.25 -1.6
440,379 - AO353_02065 0.35 -0.0
440,405 + AO353_02065 0.38 -0.2
440,405 + AO353_02065 0.38 -1.4
440,406 - AO353_02065 0.38 +0.4
440,492 + AO353_02065 0.45 +1.9
440,493 - AO353_02065 0.45 -0.0
440,501 + AO353_02065 0.46 -1.3
440,501 + AO353_02065 0.46 -1.0
440,501 + AO353_02065 0.46 -0.3
440,501 + AO353_02065 0.46 -0.3
440,501 + AO353_02065 0.46 +0.3
440,501 + AO353_02065 0.46 -1.3
440,501 + AO353_02065 0.46 -0.5
440,502 - AO353_02065 0.46 +0.5
440,502 - AO353_02065 0.46 -1.8
440,502 - AO353_02065 0.46 -0.7
440,502 - AO353_02065 0.46 +1.5
440,502 - AO353_02065 0.46 +0.0
440,502 - AO353_02065 0.46 +0.5
440,502 - AO353_02065 0.46 +0.6
440,502 - AO353_02065 0.46 -1.0
440,502 - AO353_02065 0.46 -0.8
440,502 - AO353_02065 0.46 -0.5
440,502 - AO353_02065 0.46 -1.3
440,502 - AO353_02065 0.46 -2.5
440,774 + AO353_02065 0.71 -1.4
440,774 + AO353_02065 0.71 -0.1
440,774 + AO353_02065 0.71 +2.9
440,775 - AO353_02065 0.71 +1.3
440,775 - AO353_02065 0.71 +1.4
440,775 - AO353_02065 0.71 +0.3
440,775 - AO353_02065 0.71 -0.1
441,045 - +1.0
441,045 - -0.6
441,045 - +0.6
441,100 + -2.2
441,101 - +0.0
441,101 - -0.1
441,112 + -1.6
441,113 - +0.3
441,146 + -0.5
441,146 + -0.5
441,146 + +0.3
441,146 + +0.0
441,146 + -3.1
441,146 + -1.0
441,146 + -1.1
441,146 + -1.6
441,146 + -1.3
441,147 - +0.7
441,147 - -1.4
441,147 - +0.3
441,189 + -2.1
441,190 - -1.6
441,235 + AO353_02070 0.11 +1.3
441,235 + AO353_02070 0.11 -1.1
441,235 + AO353_02070 0.11 -2.3
441,236 - AO353_02070 0.11 +0.3
441,236 - AO353_02070 0.11 -1.2
441,236 - AO353_02070 0.11 -1.3
441,236 - AO353_02070 0.11 -0.7
441,236 - AO353_02070 0.11 -0.9
441,236 - AO353_02070 0.11 -1.5
441,236 - AO353_02070 0.11 -0.8
441,466 + AO353_02070 0.32 -1.1
441,466 + AO353_02070 0.32 -1.0
441,466 + AO353_02070 0.32 -1.1
441,466 + AO353_02070 0.32 -0.8
441,466 + AO353_02070 0.32 +2.7
441,625 + AO353_02070 0.47 -0.5
441,625 + AO353_02070 0.47 +0.0
441,625 + AO353_02070 0.47 -0.5
441,626 - AO353_02070 0.47 -1.9
441,626 - AO353_02070 0.47 -0.5
441,626 - AO353_02070 0.47 -1.0
441,626 - AO353_02070 0.47 +0.0
441,626 - AO353_02070 0.47 -1.8
441,707 + AO353_02070 0.54 -0.3
441,707 + AO353_02070 0.54 -0.8
441,707 + AO353_02070 0.54 +0.3
441,708 - AO353_02070 0.55 +1.3
441,913 + AO353_02070 0.73 -1.1
442,055 - AO353_02070 0.86 -2.5
442,055 - AO353_02070 0.86 -0.6
442,085 + AO353_02070 0.89 -1.9
442,095 + AO353_02070 0.90 -0.5
442,095 + AO353_02070 0.90 -0.7

Or see this region's nucleotide sequence