Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02025 and AO353_02030 are separated by 831 nucleotides AO353_02030 and AO353_02035 overlap by 1 nucleotides AO353_02035 and AO353_02040 are separated by 24 nucleotides AO353_02040 and AO353_02045 are separated by 174 nucleotides
AO353_02025: AO353_02025 - mannose-1-phosphate guanyltransferase, at 431,568 to 433,028
_02025
AO353_02030: AO353_02030 - hypothetical protein, at 433,860 to 434,039
_02030
AO353_02035: AO353_02035 - hypothetical protein, at 434,039 to 434,278
_02035
AO353_02040: AO353_02040 - integration host factor subunit beta, at 434,303 to 434,599
_02040
AO353_02045: AO353_02045 - hypothetical protein, at 434,774 to 435,055
_02045
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 432.864 kb on - strand, within AO353_02025 at 432.873 kb on + strand, within AO353_02025 at 432.873 kb on + strand, within AO353_02025 at 432.873 kb on + strand, within AO353_02025 at 432.873 kb on + strand, within AO353_02025 at 432.874 kb on - strand, within AO353_02025 at 432.874 kb on - strand, within AO353_02025 at 432.918 kb on + strand at 432.918 kb on + strand at 432.919 kb on - strand at 433.042 kb on - strand at 433.064 kb on - strand at 433.067 kb on + strand at 433.067 kb on + strand at 433.067 kb on + strand at 433.067 kb on + strand at 433.068 kb on - strand at 433.068 kb on - strand at 433.068 kb on - strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.087 kb on + strand at 433.088 kb on - strand at 433.088 kb on - strand at 433.089 kb on + strand at 433.089 kb on + strand at 433.089 kb on + strand at 433.090 kb on - strand at 433.172 kb on - strand at 433.189 kb on - strand at 433.198 kb on + strand at 433.198 kb on + strand at 433.198 kb on + strand at 433.199 kb on - strand at 433.199 kb on - strand at 433.216 kb on + strand at 433.217 kb on - strand at 433.217 kb on - strand at 433.217 kb on - strand at 433.255 kb on + strand at 433.255 kb on + strand at 433.255 kb on + strand at 433.256 kb on - strand at 433.261 kb on + strand at 433.261 kb on + strand at 433.261 kb on + strand at 433.360 kb on + strand at 433.360 kb on + strand at 433.360 kb on + strand at 433.451 kb on + strand at 433.451 kb on + strand at 433.510 kb on + strand at 433.511 kb on - strand at 433.555 kb on + strand at 433.555 kb on + strand at 433.555 kb on + strand at 433.556 kb on - strand at 433.556 kb on - strand at 433.556 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.628 kb on + strand at 433.628 kb on + strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.630 kb on + strand at 433.630 kb on + strand at 433.630 kb on + strand at 433.631 kb on - strand at 433.737 kb on + strand at 433.738 kb on - strand at 433.738 kb on - strand at 433.752 kb on + strand at 433.766 kb on + strand at 433.853 kb on + strand at 433.853 kb on + strand at 433.854 kb on - strand at 433.858 kb on + strand at 433.859 kb on - strand at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.890 kb on - strand, within AO353_02030 at 433.890 kb on - strand, within AO353_02030 at 433.961 kb on + strand, within AO353_02030 at 434.005 kb on + strand, within AO353_02030 at 434.020 kb on + strand, within AO353_02030 at 434.021 kb on - strand, within AO353_02030 at 434.053 kb on + strand at 434.053 kb on + strand at 434.054 kb on - strand at 434.258 kb on + strand at 434.258 kb on + strand at 434.259 kb on - strand at 434.272 kb on + strand at 434.272 kb on + strand at 434.273 kb on - strand at 434.273 kb on - strand at 434.273 kb on - strand at 434.378 kb on - strand, within AO353_02040 at 434.414 kb on - strand, within AO353_02040 at 434.436 kb on + strand, within AO353_02040 at 434.441 kb on + strand, within AO353_02040 at 434.553 kb on - strand, within AO353_02040 at 434.553 kb on - strand, within AO353_02040 at 434.600 kb on - strand at 434.625 kb on + strand at 434.625 kb on + strand at 434.648 kb on - strand at 434.648 kb on - strand at 434.675 kb on + strand at 434.675 kb on + strand at 434.675 kb on + strand at 434.676 kb on - strand at 434.676 kb on - strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.687 kb on + strand at 434.687 kb on + strand at 434.693 kb on + strand at 434.693 kb on + strand at 434.693 kb on + strand at 434.693 kb on + strand at 434.831 kb on + strand, within AO353_02045 at 434.831 kb on + strand, within AO353_02045 at 434.832 kb on - strand, within AO353_02045 at 434.832 kb on - strand, within AO353_02045 at 434.832 kb on - strand, within AO353_02045 at 434.832 kb on - strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.836 kb on - strand, within AO353_02045 at 434.836 kb on - strand, within AO353_02045 at 434.836 kb on - strand, within AO353_02045 at 434.836 kb on - strand, within AO353_02045 at 434.854 kb on + strand, within AO353_02045 at 434.854 kb on + strand, within AO353_02045 at 434.855 kb on - strand, within AO353_02045 at 434.883 kb on + strand, within AO353_02045 at 434.883 kb on + strand, within AO353_02045 at 434.919 kb on + strand, within AO353_02045 at 434.919 kb on + strand, within AO353_02045 at 434.919 kb on + strand, within AO353_02045 at 434.919 kb on + strand, within AO353_02045 at 434.920 kb on - strand, within AO353_02045 at 434.920 kb on - strand, within AO353_02045 at 434.920 kb on - strand, within AO353_02045 at 434.926 kb on + strand, within AO353_02045 at 434.927 kb on - strand, within AO353_02045 at 434.927 kb on - strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.008 kb on - strand, within AO353_02045 at 435.008 kb on - strand, within AO353_02045 at 435.008 kb on - strand, within AO353_02045
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 432,864 - AO353_02025 0.89 +2.5 432,873 + AO353_02025 0.89 +5.5 432,873 + AO353_02025 0.89 +5.9 432,873 + AO353_02025 0.89 +5.0 432,873 + AO353_02025 0.89 +5.1 432,874 - AO353_02025 0.89 +6.3 432,874 - AO353_02025 0.89 +5.0 432,918 + +6.3 432,918 + +4.3 432,919 - +6.1 433,042 - +5.3 433,064 - +0.6 433,067 + +6.0 433,067 + +6.1 433,067 + +5.1 433,067 + +6.5 433,068 - +2.3 433,068 - -1.4 433,068 - -1.0 433,087 + +5.3 433,087 + +6.5 433,087 + +6.1 433,087 + +5.7 433,087 + +5.2 433,087 + +6.5 433,088 - +1.1 433,088 - -0.8 433,089 + +4.4 433,089 + +6.3 433,089 + +6.6 433,090 - +0.1 433,172 - -0.7 433,189 - +1.1 433,198 + +6.0 433,198 + +7.3 433,198 + +6.1 433,199 - -2.7 433,199 - -0.3 433,216 + +7.2 433,217 - +1.0 433,217 - +0.7 433,217 - +2.3 433,255 + +4.1 433,255 + +6.1 433,255 + +6.2 433,256 - +0.2 433,261 + +5.3 433,261 + +6.1 433,261 + +4.7 433,360 + +6.0 433,360 + +8.4 433,360 + +4.5 433,451 + +5.2 433,451 + +5.9 433,510 + +5.7 433,511 - -1.1 433,555 + +5.7 433,555 + +6.8 433,555 + +7.2 433,556 - -2.2 433,556 - +0.2 433,556 - +0.7 433,565 - -1.1 433,565 - -1.4 433,565 - -1.6 433,565 - -0.9 433,565 - +0.3 433,565 - +0.5 433,628 + +0.7 433,628 + +7.3 433,629 - -0.5 433,629 - +1.3 433,629 - -0.2 433,629 - -1.9 433,630 + +4.9 433,630 + +4.5 433,630 + +6.5 433,631 - -0.7 433,737 + +4.7 433,738 - +0.5 433,738 - -0.7 433,752 + +5.7 433,766 + +6.2 433,853 + +4.4 433,853 + +5.1 433,854 - +0.0 433,858 + +3.7 433,859 - -0.5 433,883 + AO353_02030 0.13 +5.6 433,883 + AO353_02030 0.13 -1.8 433,883 + AO353_02030 0.13 +5.0 433,883 + AO353_02030 0.13 +5.2 433,884 - AO353_02030 0.13 +0.0 433,884 - AO353_02030 0.13 -1.5 433,884 - AO353_02030 0.13 -2.4 433,884 - AO353_02030 0.13 -1.2 433,890 - AO353_02030 0.17 +1.5 433,890 - AO353_02030 0.17 +0.4 433,961 + AO353_02030 0.56 +4.6 434,005 + AO353_02030 0.81 +3.2 434,020 + AO353_02030 0.89 +6.2 434,021 - AO353_02030 0.89 -0.8 434,053 + +3.2 434,053 + +4.5 434,054 - +0.0 434,258 + +4.1 434,258 + +4.8 434,259 - +1.9 434,272 + +4.0 434,272 + +3.1 434,273 - +0.5 434,273 - -2.6 434,273 - +2.3 434,378 - AO353_02040 0.25 +0.5 434,414 - AO353_02040 0.37 -0.6 434,436 + AO353_02040 0.45 +4.7 434,441 + AO353_02040 0.46 +5.1 434,553 - AO353_02040 0.84 +2.5 434,553 - AO353_02040 0.84 +0.4 434,600 - +3.3 434,625 + +5.2 434,625 + +4.2 434,648 - -1.1 434,648 - -0.5 434,675 + +2.9 434,675 + +2.2 434,675 + +2.3 434,676 - -0.2 434,676 - -0.4 434,677 + +0.9 434,677 + +0.6 434,677 + +1.3 434,677 + +3.4 434,677 + +3.3 434,677 + +2.1 434,677 + +1.9 434,678 - +2.3 434,678 - -0.5 434,678 - -1.5 434,678 - +0.0 434,678 - -1.4 434,678 - +0.3 434,679 + +3.0 434,679 + +3.5 434,679 + +2.3 434,679 + +2.9 434,679 + +2.7 434,679 + +4.0 434,680 - -1.4 434,680 - +0.3 434,680 - -0.8 434,680 - -0.7 434,680 - -0.2 434,680 - -0.8 434,680 - -0.2 434,680 - +0.6 434,687 + +3.5 434,687 + +1.3 434,693 + +0.8 434,693 + +3.1 434,693 + +4.2 434,693 + +3.8 434,831 + AO353_02045 0.20 +1.0 434,831 + AO353_02045 0.20 +0.8 434,832 - AO353_02045 0.21 +1.3 434,832 - AO353_02045 0.21 +0.8 434,832 - AO353_02045 0.21 -1.4 434,832 - AO353_02045 0.21 -0.3 434,835 + AO353_02045 0.22 +2.5 434,835 + AO353_02045 0.22 +1.0 434,835 + AO353_02045 0.22 +0.3 434,835 + AO353_02045 0.22 +0.0 434,835 + AO353_02045 0.22 +0.1 434,836 - AO353_02045 0.22 -2.4 434,836 - AO353_02045 0.22 -1.1 434,836 - AO353_02045 0.22 -2.8 434,836 - AO353_02045 0.22 -0.4 434,854 + AO353_02045 0.28 -0.2 434,854 + AO353_02045 0.28 +1.7 434,855 - AO353_02045 0.29 +0.8 434,883 + AO353_02045 0.39 -0.2 434,883 + AO353_02045 0.39 +0.7 434,919 + AO353_02045 0.51 -1.4 434,919 + AO353_02045 0.51 +1.4 434,919 + AO353_02045 0.51 +0.3 434,919 + AO353_02045 0.51 +2.1 434,920 - AO353_02045 0.52 +0.1 434,920 - AO353_02045 0.52 -0.8 434,920 - AO353_02045 0.52 -0.2 434,926 + AO353_02045 0.54 -1.0 434,927 - AO353_02045 0.54 -0.3 434,927 - AO353_02045 0.54 -3.2 435,007 + AO353_02045 0.83 +0.7 435,007 + AO353_02045 0.83 +0.3 435,007 + AO353_02045 0.83 +2.5 435,007 + AO353_02045 0.83 -1.2 435,007 + AO353_02045 0.83 +0.3 435,008 - AO353_02045 0.83 -0.2 435,008 - AO353_02045 0.83 +0.3 435,008 - AO353_02045 0.83 -1.1
Or see this region's nucleotide sequence