Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02020

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02010 and AO353_02015 overlap by 17 nucleotidesAO353_02015 and AO353_02020 are separated by 170 nucleotidesAO353_02020 and AO353_02025 are separated by 98 nucleotides AO353_02010: AO353_02010 - glycosyl transferase family 1, at 428,473 to 429,720 _02010 AO353_02015: AO353_02015 - acetyltransferase, at 429,704 to 430,333 _02015 AO353_02020: AO353_02020 - hypothetical protein, at 430,504 to 431,469 _02020 AO353_02025: AO353_02025 - mannose-1-phosphate guanyltransferase, at 431,568 to 433,028 _02025 Position (kb) 430 431 432Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 429.508 kb on + strand, within AO353_02010at 429.508 kb on + strand, within AO353_02010at 429.508 kb on + strand, within AO353_02010at 429.508 kb on + strand, within AO353_02010at 429.510 kb on + strand, within AO353_02010at 429.537 kb on - strand, within AO353_02010at 429.590 kb on + strand, within AO353_02010at 429.631 kb on - strandat 429.642 kb on - strandat 429.642 kb on - strandat 429.642 kb on - strandat 429.642 kb on - strandat 429.642 kb on - strandat 429.715 kb on + strandat 429.767 kb on - strand, within AO353_02015at 429.771 kb on + strand, within AO353_02015at 429.771 kb on + strand, within AO353_02015at 429.772 kb on - strand, within AO353_02015at 429.887 kb on + strand, within AO353_02015at 429.887 kb on + strand, within AO353_02015at 429.888 kb on - strand, within AO353_02015at 429.888 kb on - strand, within AO353_02015at 429.893 kb on + strand, within AO353_02015at 429.893 kb on + strand, within AO353_02015at 429.894 kb on - strand, within AO353_02015at 429.894 kb on - strand, within AO353_02015at 429.982 kb on + strand, within AO353_02015at 429.982 kb on + strand, within AO353_02015at 430.005 kb on - strand, within AO353_02015at 430.042 kb on + strand, within AO353_02015at 430.068 kb on + strand, within AO353_02015at 430.069 kb on - strand, within AO353_02015at 430.069 kb on - strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.070 kb on + strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.071 kb on - strand, within AO353_02015at 430.072 kb on + strand, within AO353_02015at 430.073 kb on - strand, within AO353_02015at 430.073 kb on - strand, within AO353_02015at 430.082 kb on - strand, within AO353_02015at 430.094 kb on - strand, within AO353_02015at 430.159 kb on + strand, within AO353_02015at 430.254 kb on + strand, within AO353_02015at 430.275 kb on + strandat 430.275 kb on + strandat 430.275 kb on + strandat 430.275 kb on + strandat 430.276 kb on - strandat 430.276 kb on - strandat 430.276 kb on - strandat 430.276 kb on - strandat 430.278 kb on + strandat 430.278 kb on + strandat 430.278 kb on + strandat 430.279 kb on - strandat 430.324 kb on + strandat 430.324 kb on + strandat 430.325 kb on - strandat 430.372 kb on + strandat 430.373 kb on - strandat 430.373 kb on - strandat 430.396 kb on + strandat 430.396 kb on + strandat 430.396 kb on + strandat 430.420 kb on + strandat 430.450 kb on + strandat 430.450 kb on + strandat 430.464 kb on + strandat 430.464 kb on + strandat 430.464 kb on + strandat 430.464 kb on + strandat 430.464 kb on + strandat 430.465 kb on - strandat 430.465 kb on - strandat 430.505 kb on + strandat 430.505 kb on + strandat 430.505 kb on + strandat 430.516 kb on + strandat 430.632 kb on + strand, within AO353_02020at 430.632 kb on + strand, within AO353_02020at 430.702 kb on - strand, within AO353_02020at 430.748 kb on - strand, within AO353_02020at 430.786 kb on - strand, within AO353_02020at 430.862 kb on + strand, within AO353_02020at 430.862 kb on + strand, within AO353_02020at 430.863 kb on - strand, within AO353_02020at 430.951 kb on - strand, within AO353_02020at 431.064 kb on - strand, within AO353_02020at 431.064 kb on - strand, within AO353_02020at 431.133 kb on + strand, within AO353_02020at 431.159 kb on + strand, within AO353_02020at 431.159 kb on + strand, within AO353_02020at 431.189 kb on - strand, within AO353_02020at 431.189 kb on - strand, within AO353_02020at 431.189 kb on - strand, within AO353_02020at 431.231 kb on + strand, within AO353_02020at 431.231 kb on + strand, within AO353_02020at 431.232 kb on - strand, within AO353_02020at 431.232 kb on - strand, within AO353_02020at 431.375 kb on + strandat 431.407 kb on - strandat 431.452 kb on - strandat 431.452 kb on - strandat 431.455 kb on + strandat 431.456 kb on - strandat 431.495 kb on + strandat 431.522 kb on - strandat 431.549 kb on - strandat 431.577 kb on - strandat 431.580 kb on - strandat 431.596 kb on - strandat 431.606 kb on - strandat 431.628 kb on - strandat 431.670 kb on + strandat 431.671 kb on - strandat 431.671 kb on - strandat 431.709 kb on - strandat 431.861 kb on + strand, within AO353_02025at 431.902 kb on + strand, within AO353_02025at 431.902 kb on + strand, within AO353_02025at 431.902 kb on + strand, within AO353_02025at 431.903 kb on - strand, within AO353_02025at 431.903 kb on - strand, within AO353_02025at 431.903 kb on - strand, within AO353_02025at 431.903 kb on - strand, within AO353_02025at 431.903 kb on - strand, within AO353_02025at 432.090 kb on + strand, within AO353_02025at 432.090 kb on + strand, within AO353_02025at 432.091 kb on - strand, within AO353_02025at 432.091 kb on - strand, within AO353_02025at 432.091 kb on - strand, within AO353_02025at 432.091 kb on - strand, within AO353_02025at 432.091 kb on - strand, within AO353_02025at 432.091 kb on - strand, within AO353_02025at 432.094 kb on + strand, within AO353_02025at 432.094 kb on + strand, within AO353_02025at 432.094 kb on + strand, within AO353_02025at 432.094 kb on + strand, within AO353_02025at 432.094 kb on + strand, within AO353_02025at 432.094 kb on + strand, within AO353_02025at 432.094 kb on + strand, within AO353_02025at 432.094 kb on + strand, within AO353_02025at 432.094 kb on + strand, within AO353_02025at 432.095 kb on - strand, within AO353_02025at 432.095 kb on - strand, within AO353_02025at 432.095 kb on - strand, within AO353_02025at 432.095 kb on - strand, within AO353_02025at 432.095 kb on - strand, within AO353_02025at 432.117 kb on + strand, within AO353_02025at 432.117 kb on + strand, within AO353_02025at 432.254 kb on - strand, within AO353_02025at 432.254 kb on - strand, within AO353_02025at 432.313 kb on + strand, within AO353_02025at 432.313 kb on + strand, within AO353_02025at 432.314 kb on - strand, within AO353_02025at 432.330 kb on - strand, within AO353_02025at 432.369 kb on + strand, within AO353_02025at 432.370 kb on - strand, within AO353_02025at 432.370 kb on - strand, within AO353_02025at 432.442 kb on + strand, within AO353_02025at 432.445 kb on + strand, within AO353_02025at 432.445 kb on + strand, within AO353_02025at 432.445 kb on + strand, within AO353_02025at 432.446 kb on - strand, within AO353_02025at 432.446 kb on - strand, within AO353_02025at 432.446 kb on - strand, within AO353_02025at 432.446 kb on - strand, within AO353_02025at 432.459 kb on + strand, within AO353_02025at 432.459 kb on + strand, within AO353_02025at 432.459 kb on + strand, within AO353_02025at 432.459 kb on + strand, within AO353_02025at 432.459 kb on + strand, within AO353_02025at 432.460 kb on - strand, within AO353_02025at 432.460 kb on - strand, within AO353_02025at 432.460 kb on - strand, within AO353_02025at 432.460 kb on - strand, within AO353_02025at 432.460 kb on - strand, within AO353_02025at 432.460 kb on - strand, within AO353_02025at 432.460 kb on - strand, within AO353_02025at 432.463 kb on + strand, within AO353_02025at 432.464 kb on - strand, within AO353_02025

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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429,508 + AO353_02010 0.83 +3.7
429,508 + AO353_02010 0.83 +4.8
429,508 + AO353_02010 0.83 +6.7
429,508 + AO353_02010 0.83 +4.1
429,510 + AO353_02010 0.83 +5.2
429,537 - AO353_02010 0.85 +4.1
429,590 + AO353_02010 0.90 +2.6
429,631 - +4.0
429,642 - +4.6
429,642 - +5.0
429,642 - +6.8
429,642 - +7.0
429,642 - +4.3
429,715 + +5.6
429,767 - AO353_02015 0.10 +4.8
429,771 + AO353_02015 0.11 +2.8
429,771 + AO353_02015 0.11 +5.0
429,772 - AO353_02015 0.11 +4.3
429,887 + AO353_02015 0.29 +6.6
429,887 + AO353_02015 0.29 +5.8
429,888 - AO353_02015 0.29 +3.2
429,888 - AO353_02015 0.29 +4.2
429,893 + AO353_02015 0.30 +4.1
429,893 + AO353_02015 0.30 +5.6
429,894 - AO353_02015 0.30 +5.5
429,894 - AO353_02015 0.30 +5.3
429,982 + AO353_02015 0.44 +4.7
429,982 + AO353_02015 0.44 +5.5
430,005 - AO353_02015 0.48 +3.6
430,042 + AO353_02015 0.54 +6.6
430,068 + AO353_02015 0.58 +5.6
430,069 - AO353_02015 0.58 +4.8
430,069 - AO353_02015 0.58 +4.2
430,070 + AO353_02015 0.58 +6.0
430,070 + AO353_02015 0.58 +5.1
430,070 + AO353_02015 0.58 +4.1
430,070 + AO353_02015 0.58 +3.5
430,070 + AO353_02015 0.58 +3.3
430,071 - AO353_02015 0.58 +1.7
430,071 - AO353_02015 0.58 +4.5
430,071 - AO353_02015 0.58 +3.9
430,071 - AO353_02015 0.58 +4.3
430,071 - AO353_02015 0.58 +3.6
430,071 - AO353_02015 0.58 +4.7
430,072 + AO353_02015 0.58 +5.4
430,073 - AO353_02015 0.59 +4.8
430,073 - AO353_02015 0.59 +3.9
430,082 - AO353_02015 0.60 +6.0
430,094 - AO353_02015 0.62 +3.1
430,159 + AO353_02015 0.72 +6.1
430,254 + AO353_02015 0.87 +4.1
430,275 + +5.4
430,275 + +5.2
430,275 + +0.3
430,275 + +5.5
430,276 - +5.8
430,276 - +0.0
430,276 - +4.4
430,276 - +4.4
430,278 + +3.1
430,278 + +7.1
430,278 + +4.4
430,279 - +3.1
430,324 + +4.6
430,324 + +2.6
430,325 - +4.5
430,372 + +5.2
430,373 - -1.6
430,373 - -0.8
430,396 + +4.4
430,396 + +6.8
430,396 + +5.2
430,420 + +6.7
430,450 + +6.8
430,450 + +6.1
430,464 + +7.0
430,464 + +6.3
430,464 + +6.8
430,464 + +5.7
430,464 + +6.9
430,465 - -1.1
430,465 - +0.3
430,505 + +6.3
430,505 + +7.4
430,505 + +6.4
430,516 + +5.3
430,632 + AO353_02020 0.13 +3.8
430,632 + AO353_02020 0.13 +6.8
430,702 - AO353_02020 0.20 +7.7
430,748 - AO353_02020 0.25 +2.1
430,786 - AO353_02020 0.29 +3.7
430,862 + AO353_02020 0.37 +5.2
430,862 + AO353_02020 0.37 +5.4
430,863 - AO353_02020 0.37 +6.9
430,951 - AO353_02020 0.46 +5.8
431,064 - AO353_02020 0.58 +3.0
431,064 - AO353_02020 0.58 +3.3
431,133 + AO353_02020 0.65 +4.5
431,159 + AO353_02020 0.68 +6.2
431,159 + AO353_02020 0.68 +5.5
431,189 - AO353_02020 0.71 +3.6
431,189 - AO353_02020 0.71 +4.4
431,189 - AO353_02020 0.71 +6.1
431,231 + AO353_02020 0.75 +5.6
431,231 + AO353_02020 0.75 +3.4
431,232 - AO353_02020 0.75 +5.8
431,232 - AO353_02020 0.75 +4.3
431,375 + +5.7
431,407 - +4.9
431,452 - +7.3
431,452 - +4.3
431,455 + +6.4
431,456 - +3.4
431,495 + +5.2
431,522 - -0.1
431,549 - +0.2
431,577 - -0.5
431,580 - -0.8
431,596 - +3.2
431,606 - +7.8
431,628 - +6.1
431,670 + +5.2
431,671 - +3.2
431,671 - +4.2
431,709 - +3.8
431,861 + AO353_02025 0.20 +6.6
431,902 + AO353_02025 0.23 +5.6
431,902 + AO353_02025 0.23 +6.4
431,902 + AO353_02025 0.23 +5.2
431,903 - AO353_02025 0.23 +5.3
431,903 - AO353_02025 0.23 +5.1
431,903 - AO353_02025 0.23 +4.6
431,903 - AO353_02025 0.23 +4.2
431,903 - AO353_02025 0.23 +3.7
432,090 + AO353_02025 0.36 +5.9
432,090 + AO353_02025 0.36 +6.5
432,091 - AO353_02025 0.36 +5.5
432,091 - AO353_02025 0.36 +3.3
432,091 - AO353_02025 0.36 +5.8
432,091 - AO353_02025 0.36 +5.7
432,091 - AO353_02025 0.36 +4.9
432,091 - AO353_02025 0.36 +4.9
432,094 + AO353_02025 0.36 +5.0
432,094 + AO353_02025 0.36 +4.6
432,094 + AO353_02025 0.36 +6.9
432,094 + AO353_02025 0.36 +3.4
432,094 + AO353_02025 0.36 +4.7
432,094 + AO353_02025 0.36 +5.6
432,094 + AO353_02025 0.36 +6.8
432,094 + AO353_02025 0.36 +6.3
432,094 + AO353_02025 0.36 +3.0
432,095 - AO353_02025 0.36 +3.9
432,095 - AO353_02025 0.36 +6.8
432,095 - AO353_02025 0.36 +6.4
432,095 - AO353_02025 0.36 +3.9
432,095 - AO353_02025 0.36 +4.1
432,117 + AO353_02025 0.38 +6.9
432,117 + AO353_02025 0.38 +5.7
432,254 - AO353_02025 0.47 +3.7
432,254 - AO353_02025 0.47 +5.2
432,313 + AO353_02025 0.51 +5.8
432,313 + AO353_02025 0.51 +3.0
432,314 - AO353_02025 0.51 +5.6
432,330 - AO353_02025 0.52 +5.5
432,369 + AO353_02025 0.55 +5.6
432,370 - AO353_02025 0.55 +5.0
432,370 - AO353_02025 0.55 +5.3
432,442 + AO353_02025 0.60 +6.7
432,445 + AO353_02025 0.60 +5.6
432,445 + AO353_02025 0.60 +4.6
432,445 + AO353_02025 0.60 +5.1
432,446 - AO353_02025 0.60 +4.3
432,446 - AO353_02025 0.60 +5.5
432,446 - AO353_02025 0.60 +4.3
432,446 - AO353_02025 0.60 +5.2
432,459 + AO353_02025 0.61 +4.5
432,459 + AO353_02025 0.61 +5.9
432,459 + AO353_02025 0.61 +5.4
432,459 + AO353_02025 0.61 +5.7
432,459 + AO353_02025 0.61 +6.7
432,460 - AO353_02025 0.61 +4.6
432,460 - AO353_02025 0.61 +5.2
432,460 - AO353_02025 0.61 +4.7
432,460 - AO353_02025 0.61 +4.0
432,460 - AO353_02025 0.61 +5.3
432,460 - AO353_02025 0.61 +1.6
432,460 - AO353_02025 0.61 +5.6
432,463 + AO353_02025 0.61 +4.8
432,464 - AO353_02025 0.61 +5.6

Or see this region's nucleotide sequence