Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01885

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01880 and AO353_01885 are separated by 140 nucleotidesAO353_01885 and AO353_01890 are separated by 223 nucleotides AO353_01880: AO353_01880 - beta (1-6) glucans synthase, at 396,985 to 398,580 _01880 AO353_01885: AO353_01885 - hypothetical protein, at 398,721 to 399,092 _01885 AO353_01890: AO353_01890 - serine/threonine protein kinase, at 399,316 to 400,614 _01890 Position (kb) 398 399 400Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 397.852 kb on + strand, within AO353_01880at 397.852 kb on + strand, within AO353_01880at 397.852 kb on + strand, within AO353_01880at 397.852 kb on + strand, within AO353_01880at 397.852 kb on + strand, within AO353_01880at 397.852 kb on + strand, within AO353_01880at 397.852 kb on + strand, within AO353_01880at 397.852 kb on + strand, within AO353_01880at 397.853 kb on - strand, within AO353_01880at 397.853 kb on - strand, within AO353_01880at 397.853 kb on - strandat 397.853 kb on - strand, within AO353_01880at 397.955 kb on + strand, within AO353_01880at 397.956 kb on - strand, within AO353_01880at 398.058 kb on + strand, within AO353_01880at 398.396 kb on - strand, within AO353_01880at 398.396 kb on - strand, within AO353_01880at 398.396 kb on - strand, within AO353_01880at 398.396 kb on - strand, within AO353_01880at 398.574 kb on + strandat 398.574 kb on + strandat 398.574 kb on + strandat 398.574 kb on + strandat 398.575 kb on - strandat 398.575 kb on - strandat 398.575 kb on - strandat 398.581 kb on + strandat 398.582 kb on - strandat 398.638 kb on + strandat 398.645 kb on + strandat 398.669 kb on + strandat 398.669 kb on + strandat 398.669 kb on + strandat 398.670 kb on - strandat 398.670 kb on - strandat 398.670 kb on - strandat 398.670 kb on - strandat 398.681 kb on - strandat 398.681 kb on - strandat 398.778 kb on + strand, within AO353_01885at 398.795 kb on + strand, within AO353_01885at 398.796 kb on - strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.797 kb on + strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 398.798 kb on - strand, within AO353_01885at 399.016 kb on + strand, within AO353_01885at 399.016 kb on + strand, within AO353_01885at 399.016 kb on + strand, within AO353_01885at 399.017 kb on - strand, within AO353_01885at 399.017 kb on - strand, within AO353_01885at 399.017 kb on - strand, within AO353_01885at 399.017 kb on - strand, within AO353_01885at 399.017 kb on - strand, within AO353_01885at 399.017 kb on - strand, within AO353_01885at 399.017 kb on - strand, within AO353_01885at 399.029 kb on - strand, within AO353_01885at 399.029 kb on - strand, within AO353_01885at 399.029 kb on - strand, within AO353_01885at 399.068 kb on + strandat 399.068 kb on + strandat 399.068 kb on + strandat 399.069 kb on - strandat 399.069 kb on - strandat 399.069 kb on - strandat 399.128 kb on - strandat 399.128 kb on - strandat 399.144 kb on + strandat 399.144 kb on + strandat 399.193 kb on + strandat 399.193 kb on + strandat 399.193 kb on + strandat 399.193 kb on + strandat 399.193 kb on + strandat 399.193 kb on + strandat 399.194 kb on - strandat 399.194 kb on - strandat 399.271 kb on + strandat 399.271 kb on + strandat 399.272 kb on - strandat 399.292 kb on + strandat 399.292 kb on + strandat 399.292 kb on + strandat 399.293 kb on - strandat 399.293 kb on - strandat 399.293 kb on - strandat 399.293 kb on - strandat 399.293 kb on - strandat 399.302 kb on + strandat 399.303 kb on - strandat 399.311 kb on + strandat 399.311 kb on + strandat 399.311 kb on + strandat 399.311 kb on + strandat 399.311 kb on + strandat 399.311 kb on + strandat 399.312 kb on - strandat 399.312 kb on - strandat 399.312 kb on - strandat 399.312 kb on - strandat 399.312 kb on - strandat 399.312 kb on - strandat 399.312 kb on - strandat 399.312 kb on - strandat 399.403 kb on + strandat 399.403 kb on + strandat 399.403 kb on + strandat 399.403 kb on + strandat 399.404 kb on - strandat 399.505 kb on + strand, within AO353_01890at 399.505 kb on + strand, within AO353_01890at 399.505 kb on + strand, within AO353_01890at 399.505 kb on + strand, within AO353_01890at 399.506 kb on - strand, within AO353_01890at 399.577 kb on + strand, within AO353_01890at 399.577 kb on + strand, within AO353_01890at 399.578 kb on - strand, within AO353_01890at 399.578 kb on - strand, within AO353_01890at 399.578 kb on - strand, within AO353_01890at 399.657 kb on + strand, within AO353_01890at 399.665 kb on - strand, within AO353_01890at 399.679 kb on + strand, within AO353_01890at 399.679 kb on + strand, within AO353_01890at 399.680 kb on - strand, within AO353_01890at 399.680 kb on - strand, within AO353_01890at 399.680 kb on - strand, within AO353_01890at 399.680 kb on - strand, within AO353_01890at 399.682 kb on + strand, within AO353_01890at 399.682 kb on + strand, within AO353_01890at 399.682 kb on + strand, within AO353_01890at 399.682 kb on + strand, within AO353_01890at 399.682 kb on + strand, within AO353_01890at 399.682 kb on + strand, within AO353_01890at 399.683 kb on - strand, within AO353_01890at 399.683 kb on - strand, within AO353_01890at 399.683 kb on - strand, within AO353_01890at 399.683 kb on - strand, within AO353_01890at 399.683 kb on - strand, within AO353_01890at 399.683 kb on - strand, within AO353_01890at 399.796 kb on + strand, within AO353_01890at 399.796 kb on + strand, within AO353_01890at 399.796 kb on + strand, within AO353_01890at 399.796 kb on + strand, within AO353_01890at 399.796 kb on + strand, within AO353_01890at 399.796 kb on + strand, within AO353_01890at 399.797 kb on - strand, within AO353_01890at 399.797 kb on - strand, within AO353_01890at 399.850 kb on + strand, within AO353_01890at 399.850 kb on + strand, within AO353_01890at 399.851 kb on - strand, within AO353_01890at 399.853 kb on + strand, within AO353_01890at 399.853 kb on + strand, within AO353_01890at 399.853 kb on + strand, within AO353_01890at 399.853 kb on + strand, within AO353_01890at 399.854 kb on - strand, within AO353_01890at 399.854 kb on - strand, within AO353_01890at 399.854 kb on - strand, within AO353_01890at 399.854 kb on - strand, within AO353_01890at 399.970 kb on + strand, within AO353_01890at 399.970 kb on + strand, within AO353_01890at 399.970 kb on + strand, within AO353_01890at 399.971 kb on - strand, within AO353_01890at 399.971 kb on - strand, within AO353_01890at 399.971 kb on - strand, within AO353_01890at 399.971 kb on - strand, within AO353_01890at 399.971 kb on - strand, within AO353_01890at 399.971 kb on - strand, within AO353_01890at 399.971 kb on - strand, within AO353_01890at 400.001 kb on + strand, within AO353_01890at 400.001 kb on + strand, within AO353_01890at 400.002 kb on - strand, within AO353_01890at 400.002 kb on - strand, within AO353_01890at 400.002 kb on - strand, within AO353_01890at 400.002 kb on - strand, within AO353_01890at 400.042 kb on + strand, within AO353_01890at 400.042 kb on + strand, within AO353_01890at 400.042 kb on + strand, within AO353_01890at 400.042 kb on + strand, within AO353_01890at 400.042 kb on + strand, within AO353_01890at 400.043 kb on - strand, within AO353_01890at 400.043 kb on - strand, within AO353_01890at 400.043 kb on - strand, within AO353_01890at 400.043 kb on - strand, within AO353_01890at 400.043 kb on - strand, within AO353_01890at 400.043 kb on - strand, within AO353_01890at 400.043 kb on - strand, within AO353_01890at 400.073 kb on - strand, within AO353_01890at 400.073 kb on - strand, within AO353_01890at 400.073 kb on - strand, within AO353_01890at 400.091 kb on - strand, within AO353_01890at 400.091 kb on - strand, within AO353_01890

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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397,852 + AO353_01880 0.54 +1.1
397,852 + AO353_01880 0.54 +1.3
397,852 + AO353_01880 0.54 -0.3
397,852 + AO353_01880 0.54 -0.2
397,852 + AO353_01880 0.54 +0.1
397,852 + AO353_01880 0.54 +0.2
397,852 + AO353_01880 0.54 -0.3
397,852 + AO353_01880 0.54 +0.1
397,853 - AO353_01880 0.54 +2.3
397,853 - AO353_01880 0.54 -1.0
397,853 - +2.3
397,853 - AO353_01880 0.54 +0.6
397,955 + AO353_01880 0.61 +0.8
397,956 - AO353_01880 0.61 +0.6
398,058 + AO353_01880 0.67 +1.1
398,396 - AO353_01880 0.88 -0.3
398,396 - AO353_01880 0.88 -0.9
398,396 - AO353_01880 0.88 +0.1
398,396 - AO353_01880 0.88 -0.4
398,574 + +5.5
398,574 + -0.1
398,574 + -1.8
398,574 + -0.7
398,575 - -2.1
398,575 - -1.1
398,575 - +0.3
398,581 + -1.4
398,582 - +0.2
398,638 + +0.5
398,645 + -2.0
398,669 + -0.5
398,669 + -0.3
398,669 + -0.0
398,670 - -0.7
398,670 - -0.5
398,670 - +3.3
398,670 - +1.3
398,681 - +1.1
398,681 - +0.6
398,778 + AO353_01885 0.15 -0.0
398,795 + AO353_01885 0.20 -0.9
398,796 - AO353_01885 0.20 +2.0
398,797 + AO353_01885 0.20 +0.6
398,797 + AO353_01885 0.20 +1.5
398,797 + AO353_01885 0.20 -0.3
398,797 + AO353_01885 0.20 +1.0
398,797 + AO353_01885 0.20 +0.1
398,797 + AO353_01885 0.20 +0.7
398,797 + AO353_01885 0.20 +0.2
398,797 + AO353_01885 0.20 -0.0
398,797 + AO353_01885 0.20 -1.1
398,797 + AO353_01885 0.20 -1.6
398,797 + AO353_01885 0.20 +0.6
398,798 - AO353_01885 0.21 -1.7
398,798 - AO353_01885 0.21 +0.5
398,798 - AO353_01885 0.21 +2.0
398,798 - AO353_01885 0.21 -2.0
398,798 - AO353_01885 0.21 -1.0
398,798 - AO353_01885 0.21 +2.1
398,798 - AO353_01885 0.21 -1.3
398,798 - AO353_01885 0.21 +0.9
398,798 - AO353_01885 0.21 -0.3
398,798 - AO353_01885 0.21 -1.3
398,798 - AO353_01885 0.21 -0.3
398,798 - AO353_01885 0.21 +0.3
399,016 + AO353_01885 0.79 +0.5
399,016 + AO353_01885 0.79 +0.1
399,016 + AO353_01885 0.79 +0.6
399,017 - AO353_01885 0.80 +1.1
399,017 - AO353_01885 0.80 +0.5
399,017 - AO353_01885 0.80 +0.7
399,017 - AO353_01885 0.80 +1.4
399,017 - AO353_01885 0.80 -0.0
399,017 - AO353_01885 0.80 -0.3
399,017 - AO353_01885 0.80 -0.0
399,029 - AO353_01885 0.83 +1.7
399,029 - AO353_01885 0.83 +1.4
399,029 - AO353_01885 0.83 +0.2
399,068 + +1.7
399,068 + -2.1
399,068 + +0.9
399,069 - -1.3
399,069 - +1.1
399,069 - -2.1
399,128 - +0.2
399,128 - +1.9
399,144 + -0.9
399,144 + -0.4
399,193 + -1.4
399,193 + -1.9
399,193 + +1.0
399,193 + +0.2
399,193 + +1.6
399,193 + -0.5
399,194 - -0.2
399,194 - +0.7
399,271 + +1.3
399,271 + -0.5
399,272 - -0.7
399,292 + -1.8
399,292 + -1.2
399,292 + +1.1
399,293 - -0.9
399,293 - -1.7
399,293 - +0.3
399,293 - +1.9
399,293 - +0.4
399,302 + -0.9
399,303 - -1.3
399,311 + +1.1
399,311 + +0.2
399,311 + -1.5
399,311 + -0.1
399,311 + +0.2
399,311 + +0.5
399,312 - -2.1
399,312 - +0.6
399,312 - -1.7
399,312 - +1.6
399,312 - -0.0
399,312 - +1.2
399,312 - -0.0
399,312 - +0.4
399,403 + +0.6
399,403 + +1.6
399,403 + -0.0
399,403 + +1.3
399,404 - -1.7
399,505 + AO353_01890 0.15 -1.1
399,505 + AO353_01890 0.15 -0.7
399,505 + AO353_01890 0.15 -0.2
399,505 + AO353_01890 0.15 +0.9
399,506 - AO353_01890 0.15 +0.4
399,577 + AO353_01890 0.20 -2.0
399,577 + AO353_01890 0.20 -0.0
399,578 - AO353_01890 0.20 +1.3
399,578 - AO353_01890 0.20 -1.3
399,578 - AO353_01890 0.20 +0.8
399,657 + AO353_01890 0.26 +0.5
399,665 - AO353_01890 0.27 +0.7
399,679 + AO353_01890 0.28 -0.9
399,679 + AO353_01890 0.28 -0.9
399,680 - AO353_01890 0.28 -1.6
399,680 - AO353_01890 0.28 -1.1
399,680 - AO353_01890 0.28 -0.3
399,680 - AO353_01890 0.28 -0.5
399,682 + AO353_01890 0.28 +0.7
399,682 + AO353_01890 0.28 +1.6
399,682 + AO353_01890 0.28 -0.7
399,682 + AO353_01890 0.28 -1.1
399,682 + AO353_01890 0.28 -1.1
399,682 + AO353_01890 0.28 +0.4
399,683 - AO353_01890 0.28 -0.3
399,683 - AO353_01890 0.28 +0.3
399,683 - AO353_01890 0.28 +0.6
399,683 - AO353_01890 0.28 -1.0
399,683 - AO353_01890 0.28 +1.8
399,683 - AO353_01890 0.28 +0.3
399,796 + AO353_01890 0.37 -0.0
399,796 + AO353_01890 0.37 +0.1
399,796 + AO353_01890 0.37 -2.0
399,796 + AO353_01890 0.37 +1.2
399,796 + AO353_01890 0.37 -1.4
399,796 + AO353_01890 0.37 +0.6
399,797 - AO353_01890 0.37 +3.1
399,797 - AO353_01890 0.37 -2.8
399,850 + AO353_01890 0.41 +1.5
399,850 + AO353_01890 0.41 -0.4
399,851 - AO353_01890 0.41 -0.4
399,853 + AO353_01890 0.41 +1.3
399,853 + AO353_01890 0.41 +0.9
399,853 + AO353_01890 0.41 -2.0
399,853 + AO353_01890 0.41 +1.7
399,854 - AO353_01890 0.41 -0.5
399,854 - AO353_01890 0.41 -2.1
399,854 - AO353_01890 0.41 +0.9
399,854 - AO353_01890 0.41 +0.9
399,970 + AO353_01890 0.50 -1.0
399,970 + AO353_01890 0.50 -0.0
399,970 + AO353_01890 0.50 +2.5
399,971 - AO353_01890 0.50 -0.4
399,971 - AO353_01890 0.50 -0.7
399,971 - AO353_01890 0.50 -0.0
399,971 - AO353_01890 0.50 +1.1
399,971 - AO353_01890 0.50 -1.3
399,971 - AO353_01890 0.50 +1.1
399,971 - AO353_01890 0.50 -0.5
400,001 + AO353_01890 0.53 -0.7
400,001 + AO353_01890 0.53 +0.9
400,002 - AO353_01890 0.53 -0.7
400,002 - AO353_01890 0.53 +0.9
400,002 - AO353_01890 0.53 +1.0
400,002 - AO353_01890 0.53 +0.5
400,042 + AO353_01890 0.56 -1.1
400,042 + AO353_01890 0.56 +0.8
400,042 + AO353_01890 0.56 -1.3
400,042 + AO353_01890 0.56 +1.3
400,042 + AO353_01890 0.56 -1.9
400,043 - AO353_01890 0.56 -0.9
400,043 - AO353_01890 0.56 +0.1
400,043 - AO353_01890 0.56 -0.7
400,043 - AO353_01890 0.56 +1.7
400,043 - AO353_01890 0.56 +0.1
400,043 - AO353_01890 0.56 +0.6
400,043 - AO353_01890 0.56 -0.0
400,073 - AO353_01890 0.58 -0.4
400,073 - AO353_01890 0.58 -0.3
400,073 - AO353_01890 0.58 -0.5
400,091 - AO353_01890 0.60 -0.0
400,091 - AO353_01890 0.60 -2.1

Or see this region's nucleotide sequence