Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01745

Experiment: Sisomicin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_01740 and AO353_01745 are separated by 1 nucleotidesAO353_01745 and AO353_01750 overlap by 4 nucleotides AO353_01740: AO353_01740 - TonB-dependent receptor, at 364,369 to 366,492 _01740 AO353_01745: AO353_01745 - ABC transporter substrate-binding protein, at 366,494 to 367,423 _01745 AO353_01750: AO353_01750 - histidine kinase, at 367,420 to 369,318 _01750 Position (kb) 366 367 368Strain fitness (log2 ratio) -2 -1 0 1 2 3at 365.596 kb on + strand, within AO353_01740at 365.596 kb on + strand, within AO353_01740at 365.596 kb on + strand, within AO353_01740at 365.597 kb on - strand, within AO353_01740at 365.597 kb on - strand, within AO353_01740at 365.597 kb on - strand, within AO353_01740at 365.597 kb on - strand, within AO353_01740at 365.626 kb on + strand, within AO353_01740at 365.627 kb on - strand, within AO353_01740at 365.627 kb on - strand, within AO353_01740at 365.652 kb on + strand, within AO353_01740at 365.652 kb on + strand, within AO353_01740at 365.652 kb on + strand, within AO353_01740at 365.652 kb on + strand, within AO353_01740at 365.652 kb on + strand, within AO353_01740at 365.652 kb on + strand, within AO353_01740at 365.653 kb on - strand, within AO353_01740at 365.653 kb on - strand, within AO353_01740at 365.653 kb on - strand, within AO353_01740at 365.653 kb on - strand, within AO353_01740at 365.776 kb on + strand, within AO353_01740at 365.776 kb on + strand, within AO353_01740at 365.776 kb on + strand, within AO353_01740at 365.776 kb on + strand, within AO353_01740at 365.776 kb on + strand, within AO353_01740at 365.777 kb on - strand, within AO353_01740at 365.777 kb on - strand, within AO353_01740at 365.812 kb on + strand, within AO353_01740at 365.813 kb on - strand, within AO353_01740at 365.813 kb on - strand, within AO353_01740at 365.867 kb on - strand, within AO353_01740at 365.896 kb on + strand, within AO353_01740at 365.896 kb on + strand, within AO353_01740at 365.896 kb on + strand, within AO353_01740at 365.918 kb on - strand, within AO353_01740at 365.918 kb on - strand, within AO353_01740at 365.918 kb on - strand, within AO353_01740at 365.983 kb on + strand, within AO353_01740at 365.983 kb on + strand, within AO353_01740at 365.984 kb on - strand, within AO353_01740at 365.985 kb on + strand, within AO353_01740at 366.034 kb on + strand, within AO353_01740at 366.034 kb on + strand, within AO353_01740at 366.034 kb on + strand, within AO353_01740at 366.035 kb on - strand, within AO353_01740at 366.082 kb on + strand, within AO353_01740at 366.082 kb on + strand, within AO353_01740at 366.082 kb on + strand, within AO353_01740at 366.082 kb on + strand, within AO353_01740at 366.083 kb on - strand, within AO353_01740at 366.083 kb on - strand, within AO353_01740at 366.175 kb on + strand, within AO353_01740at 366.175 kb on + strand, within AO353_01740at 366.175 kb on + strand, within AO353_01740at 366.175 kb on + strand, within AO353_01740at 366.175 kb on + strand, within AO353_01740at 366.175 kb on + strand, within AO353_01740at 366.176 kb on - strand, within AO353_01740at 366.176 kb on - strand, within AO353_01740at 366.176 kb on - strand, within AO353_01740at 366.176 kb on - strand, within AO353_01740at 366.176 kb on - strand, within AO353_01740at 366.181 kb on + strand, within AO353_01740at 366.181 kb on + strand, within AO353_01740at 366.181 kb on + strand, within AO353_01740at 366.182 kb on - strand, within AO353_01740at 366.182 kb on - strand, within AO353_01740at 366.182 kb on - strand, within AO353_01740at 366.292 kb on + strandat 366.292 kb on + strandat 366.292 kb on + strandat 366.292 kb on + strandat 366.292 kb on + strandat 366.292 kb on + strandat 366.292 kb on + strandat 366.292 kb on + strandat 366.292 kb on + strandat 366.292 kb on + strandat 366.292 kb on + strandat 366.292 kb on + strandat 366.292 kb on + strandat 366.292 kb on + strandat 366.293 kb on - strandat 366.293 kb on - strandat 366.293 kb on - strandat 366.293 kb on - strandat 366.293 kb on - strandat 366.293 kb on - strandat 366.293 kb on - strandat 366.293 kb on - strandat 366.293 kb on - strandat 366.293 kb on - strandat 366.295 kb on + strandat 366.295 kb on + strandat 366.296 kb on - strandat 366.333 kb on + strandat 366.333 kb on + strandat 366.333 kb on + strandat 366.334 kb on - strandat 366.357 kb on + strandat 366.357 kb on + strandat 366.357 kb on + strandat 366.357 kb on + strandat 366.357 kb on + strandat 366.358 kb on - strandat 366.358 kb on - strandat 366.358 kb on - strandat 366.445 kb on + strandat 366.445 kb on + strandat 366.446 kb on - strandat 366.446 kb on - strandat 366.466 kb on + strandat 366.467 kb on - strandat 366.467 kb on - strandat 366.467 kb on - strandat 366.467 kb on - strandat 366.467 kb on - strandat 366.482 kb on + strandat 366.482 kb on + strandat 366.483 kb on - strandat 366.483 kb on - strandat 366.515 kb on - strandat 366.515 kb on - strandat 367.092 kb on + strand, within AO353_01745at 367.092 kb on + strand, within AO353_01745at 367.093 kb on - strand, within AO353_01745at 367.093 kb on - strand, within AO353_01745at 367.093 kb on - strand, within AO353_01745at 367.093 kb on - strand, within AO353_01745at 367.093 kb on - strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.121 kb on + strand, within AO353_01745at 367.122 kb on - strand, within AO353_01745at 367.122 kb on - strand, within AO353_01745at 367.122 kb on - strand, within AO353_01745at 367.122 kb on - strand, within AO353_01745at 367.122 kb on - strand, within AO353_01745at 367.122 kb on - strand, within AO353_01745at 367.122 kb on - strand, within AO353_01745at 367.160 kb on + strand, within AO353_01745at 367.160 kb on + strand, within AO353_01745at 367.161 kb on - strand, within AO353_01745at 367.161 kb on - strand, within AO353_01745at 367.161 kb on - strand, within AO353_01745at 367.161 kb on - strand, within AO353_01745at 367.161 kb on - strand, within AO353_01745at 367.229 kb on + strand, within AO353_01745at 367.229 kb on + strand, within AO353_01745at 367.230 kb on - strand, within AO353_01745at 367.230 kb on - strand, within AO353_01745at 367.230 kb on - strand, within AO353_01745at 367.230 kb on - strand, within AO353_01745at 367.230 kb on - strand, within AO353_01745at 367.230 kb on - strand, within AO353_01745at 367.326 kb on + strand, within AO353_01745at 367.326 kb on + strand, within AO353_01745at 367.327 kb on - strand, within AO353_01745at 367.327 kb on - strand, within AO353_01745at 367.327 kb on - strand, within AO353_01745at 367.327 kb on - strand, within AO353_01745at 367.327 kb on - strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.329 kb on + strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.330 kb on - strand, within AO353_01745at 367.333 kb on + strandat 367.333 kb on + strandat 367.334 kb on - strandat 367.538 kb on + strandat 367.539 kb on - strandat 367.600 kb on + strandat 367.852 kb on + strand, within AO353_01750at 367.852 kb on + strand, within AO353_01750at 367.852 kb on + strand, within AO353_01750at 367.852 kb on + strand, within AO353_01750at 367.853 kb on - strand, within AO353_01750at 367.956 kb on + strand, within AO353_01750at 367.956 kb on + strand, within AO353_01750at 367.956 kb on + strand, within AO353_01750at 367.957 kb on - strand, within AO353_01750at 368.344 kb on - strand, within AO353_01750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
remove
365,596 + AO353_01740 0.58 +0.2
365,596 + AO353_01740 0.58 -1.1
365,596 + AO353_01740 0.58 -0.1
365,597 - AO353_01740 0.58 +0.1
365,597 - AO353_01740 0.58 +1.2
365,597 - AO353_01740 0.58 +0.2
365,597 - AO353_01740 0.58 -0.7
365,626 + AO353_01740 0.59 -1.5
365,627 - AO353_01740 0.59 -0.3
365,627 - AO353_01740 0.59 -0.8
365,652 + AO353_01740 0.60 -1.0
365,652 + AO353_01740 0.60 +1.0
365,652 + AO353_01740 0.60 -0.6
365,652 + AO353_01740 0.60 +1.3
365,652 + AO353_01740 0.60 -1.8
365,652 + AO353_01740 0.60 +2.3
365,653 - AO353_01740 0.60 -2.5
365,653 - AO353_01740 0.60 +0.4
365,653 - AO353_01740 0.60 +1.4
365,653 - AO353_01740 0.60 +0.0
365,776 + AO353_01740 0.66 +0.3
365,776 + AO353_01740 0.66 +1.0
365,776 + AO353_01740 0.66 +0.0
365,776 + AO353_01740 0.66 -0.3
365,776 + AO353_01740 0.66 +0.7
365,777 - AO353_01740 0.66 -0.3
365,777 - AO353_01740 0.66 -0.7
365,812 + AO353_01740 0.68 +1.8
365,813 - AO353_01740 0.68 -0.7
365,813 - AO353_01740 0.68 +1.1
365,867 - AO353_01740 0.71 -2.1
365,896 + AO353_01740 0.72 +0.4
365,896 + AO353_01740 0.72 +1.7
365,896 + AO353_01740 0.72 +0.6
365,918 - AO353_01740 0.73 -0.4
365,918 - AO353_01740 0.73 -1.1
365,918 - AO353_01740 0.73 +0.3
365,983 + AO353_01740 0.76 +3.3
365,983 + AO353_01740 0.76 +1.6
365,984 - AO353_01740 0.76 -0.1
365,985 + AO353_01740 0.76 +1.1
366,034 + AO353_01740 0.78 -0.5
366,034 + AO353_01740 0.78 +2.9
366,034 + AO353_01740 0.78 -1.1
366,035 - AO353_01740 0.78 -0.5
366,082 + AO353_01740 0.81 +2.0
366,082 + AO353_01740 0.81 -0.4
366,082 + AO353_01740 0.81 +0.6
366,082 + AO353_01740 0.81 +0.7
366,083 - AO353_01740 0.81 +1.1
366,083 - AO353_01740 0.81 +1.4
366,175 + AO353_01740 0.85 +1.5
366,175 + AO353_01740 0.85 -0.8
366,175 + AO353_01740 0.85 -0.7
366,175 + AO353_01740 0.85 +0.8
366,175 + AO353_01740 0.85 -1.6
366,175 + AO353_01740 0.85 +0.0
366,176 - AO353_01740 0.85 +0.0
366,176 - AO353_01740 0.85 -0.8
366,176 - AO353_01740 0.85 +0.9
366,176 - AO353_01740 0.85 -1.3
366,176 - AO353_01740 0.85 -0.6
366,181 + AO353_01740 0.85 +1.3
366,181 + AO353_01740 0.85 -1.8
366,181 + AO353_01740 0.85 -0.6
366,182 - AO353_01740 0.85 -0.5
366,182 - AO353_01740 0.85 -0.5
366,182 - AO353_01740 0.85 +0.0
366,292 + -2.2
366,292 + -2.5
366,292 + +0.4
366,292 + +0.2
366,292 + +0.7
366,292 + -0.3
366,292 + +0.9
366,292 + +0.3
366,292 + -0.5
366,292 + +3.3
366,292 + +1.2
366,292 + +2.2
366,292 + +0.9
366,292 + +0.3
366,293 - +0.5
366,293 - +0.5
366,293 - +0.7
366,293 - +0.0
366,293 - -0.7
366,293 - -2.6
366,293 - -2.1
366,293 - +0.2
366,293 - +1.2
366,293 - -1.8
366,295 + +0.1
366,295 + +0.0
366,296 - -1.8
366,333 + -0.5
366,333 + -1.3
366,333 + +0.6
366,334 - +0.5
366,357 + -1.3
366,357 + +0.9
366,357 + +2.3
366,357 + -0.5
366,357 + -0.6
366,358 - +0.6
366,358 - +1.2
366,358 - +0.6
366,445 + -0.8
366,445 + +0.0
366,446 - -0.3
366,446 - +0.2
366,466 + +1.7
366,467 - -0.2
366,467 - -0.8
366,467 - +1.6
366,467 - +1.0
366,467 - -0.9
366,482 + +1.4
366,482 + +1.1
366,483 - +0.6
366,483 - -0.7
366,515 - -1.1
366,515 - +0.3
367,092 + AO353_01745 0.64 -0.3
367,092 + AO353_01745 0.64 -1.1
367,093 - AO353_01745 0.64 +0.3
367,093 - AO353_01745 0.64 -0.1
367,093 - AO353_01745 0.64 -0.7
367,093 - AO353_01745 0.64 +1.9
367,093 - AO353_01745 0.64 -1.9
367,121 + AO353_01745 0.67 -0.1
367,121 + AO353_01745 0.67 -1.6
367,121 + AO353_01745 0.67 +0.4
367,121 + AO353_01745 0.67 -0.9
367,121 + AO353_01745 0.67 -1.3
367,121 + AO353_01745 0.67 -0.3
367,121 + AO353_01745 0.67 -1.5
367,121 + AO353_01745 0.67 +0.0
367,121 + AO353_01745 0.67 +0.2
367,121 + AO353_01745 0.67 -2.0
367,121 + AO353_01745 0.67 -0.9
367,122 - AO353_01745 0.68 -0.6
367,122 - AO353_01745 0.68 -0.8
367,122 - AO353_01745 0.68 -0.5
367,122 - AO353_01745 0.68 +1.0
367,122 - AO353_01745 0.68 +0.7
367,122 - AO353_01745 0.68 -1.8
367,122 - AO353_01745 0.68 -0.7
367,160 + AO353_01745 0.72 +1.3
367,160 + AO353_01745 0.72 -2.6
367,161 - AO353_01745 0.72 -0.5
367,161 - AO353_01745 0.72 -1.3
367,161 - AO353_01745 0.72 -0.1
367,161 - AO353_01745 0.72 -1.8
367,161 - AO353_01745 0.72 -0.3
367,229 + AO353_01745 0.79 -1.8
367,229 + AO353_01745 0.79 +0.0
367,230 - AO353_01745 0.79 -1.2
367,230 - AO353_01745 0.79 -1.0
367,230 - AO353_01745 0.79 +1.9
367,230 - AO353_01745 0.79 -0.5
367,230 - AO353_01745 0.79 +0.3
367,230 - AO353_01745 0.79 -0.7
367,326 + AO353_01745 0.89 +1.3
367,326 + AO353_01745 0.89 +3.3
367,327 - AO353_01745 0.90 -0.3
367,327 - AO353_01745 0.90 -0.6
367,327 - AO353_01745 0.90 -0.5
367,327 - AO353_01745 0.90 +1.1
367,327 - AO353_01745 0.90 +0.6
367,329 + AO353_01745 0.90 -0.3
367,329 + AO353_01745 0.90 +0.0
367,329 + AO353_01745 0.90 -1.0
367,329 + AO353_01745 0.90 -1.0
367,329 + AO353_01745 0.90 -0.1
367,329 + AO353_01745 0.90 -1.1
367,329 + AO353_01745 0.90 -0.6
367,329 + AO353_01745 0.90 -0.8
367,329 + AO353_01745 0.90 -1.4
367,329 + AO353_01745 0.90 -0.2
367,329 + AO353_01745 0.90 -1.5
367,329 + AO353_01745 0.90 -0.7
367,329 + AO353_01745 0.90 -1.3
367,330 - AO353_01745 0.90 -1.1
367,330 - AO353_01745 0.90 +0.9
367,330 - AO353_01745 0.90 -1.1
367,330 - AO353_01745 0.90 +0.8
367,330 - AO353_01745 0.90 -0.7
367,330 - AO353_01745 0.90 +0.3
367,330 - AO353_01745 0.90 -0.4
367,330 - AO353_01745 0.90 -2.3
367,330 - AO353_01745 0.90 -1.7
367,330 - AO353_01745 0.90 -1.0
367,330 - AO353_01745 0.90 +1.3
367,333 + -0.4
367,333 + -1.6
367,334 - +0.0
367,538 + +0.0
367,539 - +0.9
367,600 + +1.6
367,852 + AO353_01750 0.23 +1.3
367,852 + AO353_01750 0.23 -1.6
367,852 + AO353_01750 0.23 +0.2
367,852 + AO353_01750 0.23 +1.7
367,853 - AO353_01750 0.23 +1.3
367,956 + AO353_01750 0.28 -0.3
367,956 + AO353_01750 0.28 -0.1
367,956 + AO353_01750 0.28 -0.1
367,957 - AO353_01750 0.28 -1.3
368,344 - AO353_01750 0.49 +0.7

Or see this region's nucleotide sequence