Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01150

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01145 and AO353_01150 are separated by 108 nucleotidesAO353_01150 and AO353_01155 are separated by 107 nucleotides AO353_01145: AO353_01145 - magnesium transporter, at 252,580 to 253,551 _01145 AO353_01150: AO353_01150 - amidotransferase, at 253,660 to 254,388 _01150 AO353_01155: AO353_01155 - 3-hydroxyacyl-CoA dehydrogenase, at 254,496 to 256,640 _01155 Position (kb) 253 254 255Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 252.683 kb on + strand, within AO353_01145at 252.684 kb on - strand, within AO353_01145at 252.684 kb on - strand, within AO353_01145at 252.684 kb on - strand, within AO353_01145at 252.684 kb on - strand, within AO353_01145at 252.684 kb on - strand, within AO353_01145at 252.833 kb on - strand, within AO353_01145at 252.833 kb on - strand, within AO353_01145at 252.833 kb on - strand, within AO353_01145at 252.898 kb on + strand, within AO353_01145at 252.898 kb on + strand, within AO353_01145at 252.898 kb on + strand, within AO353_01145at 252.899 kb on - strand, within AO353_01145at 252.934 kb on + strand, within AO353_01145at 253.004 kb on - strand, within AO353_01145at 253.034 kb on - strand, within AO353_01145at 253.034 kb on - strand, within AO353_01145at 253.034 kb on - strand, within AO353_01145at 253.034 kb on - strand, within AO353_01145at 253.243 kb on + strand, within AO353_01145at 253.243 kb on + strand, within AO353_01145at 253.298 kb on + strand, within AO353_01145at 253.298 kb on + strandat 253.298 kb on + strand, within AO353_01145at 253.305 kb on + strand, within AO353_01145at 253.306 kb on - strand, within AO353_01145at 253.335 kb on - strand, within AO353_01145at 253.335 kb on - strand, within AO353_01145at 253.335 kb on - strand, within AO353_01145at 253.335 kb on - strand, within AO353_01145at 253.426 kb on + strand, within AO353_01145at 253.426 kb on + strand, within AO353_01145at 253.427 kb on - strand, within AO353_01145at 253.469 kb on - strandat 253.475 kb on - strandat 253.494 kb on + strandat 253.495 kb on - strandat 253.547 kb on + strandat 253.547 kb on + strandat 253.547 kb on + strandat 253.547 kb on + strandat 253.547 kb on + strandat 253.548 kb on - strandat 253.548 kb on - strandat 253.550 kb on - strandat 253.550 kb on - strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.617 kb on + strandat 253.617 kb on + strandat 253.617 kb on + strandat 253.618 kb on - strandat 253.618 kb on - strandat 253.618 kb on - strandat 253.661 kb on + strandat 253.763 kb on + strand, within AO353_01150at 253.814 kb on + strand, within AO353_01150at 253.814 kb on + strand, within AO353_01150at 253.814 kb on + strand, within AO353_01150at 253.871 kb on + strand, within AO353_01150at 253.872 kb on - strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.013 kb on - strand, within AO353_01150at 254.013 kb on - strand, within AO353_01150at 254.013 kb on - strand, within AO353_01150at 254.141 kb on + strand, within AO353_01150at 254.141 kb on + strand, within AO353_01150at 254.141 kb on + strand, within AO353_01150at 254.141 kb on + strand, within AO353_01150at 254.142 kb on - strand, within AO353_01150at 254.142 kb on - strand, within AO353_01150at 254.142 kb on - strandat 254.142 kb on - strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.327 kb on + strandat 254.327 kb on + strandat 254.327 kb on + strandat 254.328 kb on - strandat 254.407 kb on + strandat 254.575 kb on + strandat 254.575 kb on + strandat 254.575 kb on + strandat 254.608 kb on + strandat 254.712 kb on + strand, within AO353_01155at 254.712 kb on + strand, within AO353_01155at 254.712 kb on + strand, within AO353_01155at 254.713 kb on - strand, within AO353_01155at 254.713 kb on - strand, within AO353_01155at 254.713 kb on - strand, within AO353_01155at 254.713 kb on - strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.761 kb on - strand, within AO353_01155at 254.761 kb on - strand, within AO353_01155at 254.761 kb on - strand, within AO353_01155at 254.761 kb on - strand, within AO353_01155at 254.761 kb on - strand, within AO353_01155at 254.761 kb on - strand, within AO353_01155at 254.761 kb on - strand, within AO353_01155at 254.845 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.852 kb on - strand, within AO353_01155at 254.852 kb on - strand, within AO353_01155at 254.852 kb on - strand, within AO353_01155at 254.852 kb on - strand, within AO353_01155at 254.981 kb on + strand, within AO353_01155at 254.982 kb on - strand, within AO353_01155at 255.030 kb on + strand, within AO353_01155at 255.227 kb on + strand, within AO353_01155at 255.227 kb on + strand, within AO353_01155at 255.350 kb on + strand, within AO353_01155at 255.351 kb on - strand, within AO353_01155at 255.351 kb on - strand, within AO353_01155at 255.351 kb on - strand, within AO353_01155at 255.351 kb on - strand, within AO353_01155at 255.351 kb on - strand, within AO353_01155at 255.351 kb on - strand, within AO353_01155at 255.351 kb on - strand, within AO353_01155

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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252,683 + AO353_01145 0.11 -0.1
252,684 - AO353_01145 0.11 +0.3
252,684 - AO353_01145 0.11 -0.3
252,684 - AO353_01145 0.11 +2.3
252,684 - AO353_01145 0.11 +0.1
252,684 - AO353_01145 0.11 +3.5
252,833 - AO353_01145 0.26 +0.0
252,833 - AO353_01145 0.26 -0.8
252,833 - AO353_01145 0.26 -0.3
252,898 + AO353_01145 0.33 +1.6
252,898 + AO353_01145 0.33 -1.6
252,898 + AO353_01145 0.33 -2.8
252,899 - AO353_01145 0.33 -2.1
252,934 + AO353_01145 0.36 -1.9
253,004 - AO353_01145 0.44 +0.3
253,034 - AO353_01145 0.47 -0.5
253,034 - AO353_01145 0.47 +0.3
253,034 - AO353_01145 0.47 +0.0
253,034 - AO353_01145 0.47 +0.5
253,243 + AO353_01145 0.68 -1.1
253,243 + AO353_01145 0.68 +1.0
253,298 + AO353_01145 0.74 -0.5
253,298 + +0.7
253,298 + AO353_01145 0.74 -2.1
253,305 + AO353_01145 0.75 -0.9
253,306 - AO353_01145 0.75 +0.4
253,335 - AO353_01145 0.78 +1.6
253,335 - AO353_01145 0.78 +1.8
253,335 - AO353_01145 0.78 +0.0
253,335 - AO353_01145 0.78 +1.0
253,426 + AO353_01145 0.87 -0.8
253,426 + AO353_01145 0.87 -1.0
253,427 - AO353_01145 0.87 +0.5
253,469 - +0.5
253,475 - +0.0
253,494 + -1.6
253,495 - -1.0
253,547 + -1.3
253,547 + -0.5
253,547 + +0.7
253,547 + -1.1
253,547 + -1.2
253,548 - +0.5
253,548 - +0.5
253,550 - +0.7
253,550 - +0.2
253,611 + -0.8
253,611 + +0.2
253,611 + -0.5
253,611 + +1.3
253,611 + -1.0
253,617 + -0.3
253,617 + +1.7
253,617 + +0.1
253,618 - +1.5
253,618 - -0.1
253,618 - -1.1
253,661 + +1.9
253,763 + AO353_01150 0.14 +1.3
253,814 + AO353_01150 0.21 -0.8
253,814 + AO353_01150 0.21 +0.1
253,814 + AO353_01150 0.21 -0.4
253,871 + AO353_01150 0.29 -1.0
253,872 - AO353_01150 0.29 -1.3
254,012 + AO353_01150 0.48 -1.5
254,012 + AO353_01150 0.48 +0.3
254,012 + AO353_01150 0.48 -1.8
254,012 + AO353_01150 0.48 +0.0
254,012 + AO353_01150 0.48 +1.7
254,012 + AO353_01150 0.48 -0.8
254,012 + AO353_01150 0.48 -0.7
254,013 - AO353_01150 0.48 -0.6
254,013 - AO353_01150 0.48 +0.6
254,013 - AO353_01150 0.48 -1.6
254,141 + AO353_01150 0.66 +1.1
254,141 + AO353_01150 0.66 +0.5
254,141 + AO353_01150 0.66 +0.1
254,141 + AO353_01150 0.66 +1.3
254,142 - AO353_01150 0.66 +0.1
254,142 - AO353_01150 0.66 +1.2
254,142 - +0.7
254,142 - AO353_01150 0.66 -0.3
254,258 + AO353_01150 0.82 -0.1
254,258 + AO353_01150 0.82 -0.3
254,258 + AO353_01150 0.82 -0.7
254,258 + AO353_01150 0.82 -0.8
254,258 + AO353_01150 0.82 -0.8
254,259 - AO353_01150 0.82 +1.1
254,259 - AO353_01150 0.82 +0.5
254,259 - AO353_01150 0.82 +0.7
254,259 - AO353_01150 0.82 +0.6
254,259 - AO353_01150 0.82 -0.3
254,327 + +0.7
254,327 + -0.5
254,327 + +1.7
254,328 - +1.0
254,407 + -0.4
254,575 + +0.7
254,575 + -1.1
254,575 + +0.0
254,608 + +1.9
254,712 + AO353_01155 0.10 -0.6
254,712 + AO353_01155 0.10 +0.5
254,712 + AO353_01155 0.10 +1.0
254,713 - AO353_01155 0.10 -0.7
254,713 - AO353_01155 0.10 -0.7
254,713 - AO353_01155 0.10 -0.6
254,713 - AO353_01155 0.10 +1.0
254,760 + AO353_01155 0.12 -1.1
254,760 + AO353_01155 0.12 -0.3
254,760 + AO353_01155 0.12 +0.1
254,760 + AO353_01155 0.12 -0.3
254,760 + AO353_01155 0.12 -0.1
254,760 + AO353_01155 0.12 +0.5
254,760 + AO353_01155 0.12 +1.0
254,760 + AO353_01155 0.12 +3.1
254,761 - AO353_01155 0.12 -1.8
254,761 - AO353_01155 0.12 +0.3
254,761 - AO353_01155 0.12 -1.3
254,761 - AO353_01155 0.12 -0.7
254,761 - AO353_01155 0.12 -0.2
254,761 - AO353_01155 0.12 -1.0
254,761 - AO353_01155 0.12 +0.0
254,845 + AO353_01155 0.16 -1.6
254,851 + AO353_01155 0.17 +0.6
254,851 + AO353_01155 0.17 +1.3
254,851 + AO353_01155 0.17 -2.7
254,851 + AO353_01155 0.17 +0.2
254,851 + AO353_01155 0.17 -0.8
254,851 + AO353_01155 0.17 -1.5
254,851 + AO353_01155 0.17 -0.3
254,851 + AO353_01155 0.17 +0.7
254,851 + AO353_01155 0.17 +0.7
254,852 - AO353_01155 0.17 -0.3
254,852 - AO353_01155 0.17 +1.3
254,852 - AO353_01155 0.17 -0.3
254,852 - AO353_01155 0.17 -1.9
254,981 + AO353_01155 0.23 +0.7
254,982 - AO353_01155 0.23 -0.5
255,030 + AO353_01155 0.25 -1.3
255,227 + AO353_01155 0.34 +0.5
255,227 + AO353_01155 0.34 +1.0
255,350 + AO353_01155 0.40 +0.3
255,351 - AO353_01155 0.40 -1.1
255,351 - AO353_01155 0.40 -1.8
255,351 - AO353_01155 0.40 +0.6
255,351 - AO353_01155 0.40 -0.8
255,351 - AO353_01155 0.40 +0.3
255,351 - AO353_01155 0.40 -0.3
255,351 - AO353_01155 0.40 -0.6

Or see this region's nucleotide sequence