Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00900

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00895 and AO353_00900 are separated by 67 nucleotidesAO353_00900 and AO353_00905 overlap by 4 nucleotidesAO353_00905 and AO353_00910 are separated by 270 nucleotides AO353_00895: AO353_00895 - 2-methylcitrate synthase, at 204,154 to 205,281 _00895 AO353_00900: AO353_00900 - 2-methylisocitrate lyase, at 205,349 to 206,242 _00900 AO353_00905: AO353_00905 - GntR family transcriptional regulator, at 206,239 to 206,961 _00905 AO353_00910: AO353_00910 - ATP-dependent zinc protease, at 207,232 to 207,771 _00910 Position (kb) 205 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 204.491 kb on + strand, within AO353_00895at 204.491 kb on + strand, within AO353_00895at 204.491 kb on + strand, within AO353_00895at 204.492 kb on - strand, within AO353_00895at 204.492 kb on - strand, within AO353_00895at 204.731 kb on + strand, within AO353_00895at 204.875 kb on + strand, within AO353_00895at 204.875 kb on + strand, within AO353_00895at 204.876 kb on - strand, within AO353_00895at 205.076 kb on + strand, within AO353_00895at 205.076 kb on + strand, within AO353_00895at 205.076 kb on + strand, within AO353_00895at 205.077 kb on - strand, within AO353_00895at 205.077 kb on - strand, within AO353_00895at 205.112 kb on + strand, within AO353_00895at 205.112 kb on + strand, within AO353_00895at 205.112 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.124 kb on + strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.125 kb on - strand, within AO353_00895at 205.172 kb on + strandat 205.182 kb on - strandat 205.208 kb on - strandat 205.265 kb on - strandat 205.265 kb on - strandat 205.324 kb on + strandat 205.324 kb on + strandat 205.324 kb on + strandat 205.324 kb on + strandat 205.325 kb on - strandat 205.341 kb on - strandat 205.417 kb on - strandat 205.485 kb on + strand, within AO353_00900at 205.485 kb on + strand, within AO353_00900at 205.486 kb on - strand, within AO353_00900at 205.486 kb on - strand, within AO353_00900at 205.578 kb on + strand, within AO353_00900at 205.579 kb on - strand, within AO353_00900at 205.579 kb on - strand, within AO353_00900at 205.579 kb on - strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strandat 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strandat 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.670 kb on - strand, within AO353_00900at 205.670 kb on - strand, within AO353_00900at 205.852 kb on + strand, within AO353_00900at 206.024 kb on + strand, within AO353_00900at 206.024 kb on + strand, within AO353_00900at 206.109 kb on + strand, within AO353_00900at 206.109 kb on + strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strandat 206.110 kb on - strandat 206.113 kb on + strand, within AO353_00900at 206.113 kb on + strand, within AO353_00900at 206.113 kb on + strand, within AO353_00900at 206.286 kb on - strandat 206.441 kb on + strand, within AO353_00905at 206.442 kb on - strand, within AO353_00905at 206.442 kb on - strand, within AO353_00905at 206.459 kb on + strand, within AO353_00905at 206.459 kb on + strand, within AO353_00905at 206.460 kb on - strand, within AO353_00905at 206.550 kb on - strand, within AO353_00905at 206.688 kb on - strand, within AO353_00905at 206.734 kb on + strand, within AO353_00905at 206.735 kb on - strand, within AO353_00905at 206.814 kb on - strand, within AO353_00905at 207.054 kb on + strandat 207.067 kb on + strandat 207.067 kb on + strandat 207.068 kb on - strandat 207.068 kb on - strandat 207.075 kb on - strandat 207.078 kb on + strandat 207.079 kb on - strandat 207.079 kb on - strandat 207.106 kb on - strandat 207.106 kb on - strandat 207.119 kb on + strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.153 kb on - strandat 207.164 kb on + strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.231 kb on + strandat 207.231 kb on + strandat 207.231 kb on + strandat 207.231 kb on + strandat 207.232 kb on - strandat 207.232 kb on - strandat 207.232 kb on - strandat 207.232 kb on - strandat 207.232 kb on - strandat 207.232 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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204,491 + AO353_00895 0.30 +1.3
204,491 + AO353_00895 0.30 -1.5
204,491 + AO353_00895 0.30 +0.0
204,492 - AO353_00895 0.30 -0.8
204,492 - AO353_00895 0.30 +0.5
204,731 + AO353_00895 0.51 -1.5
204,875 + AO353_00895 0.64 +0.0
204,875 + AO353_00895 0.64 +0.3
204,876 - AO353_00895 0.64 +0.3
205,076 + AO353_00895 0.82 +1.8
205,076 + AO353_00895 0.82 -1.2
205,076 + AO353_00895 0.82 -0.3
205,077 - AO353_00895 0.82 +0.0
205,077 - AO353_00895 0.82 +0.3
205,112 + AO353_00895 0.85 +1.2
205,112 + AO353_00895 0.85 -0.8
205,112 + AO353_00895 0.85 -0.1
205,124 + AO353_00895 0.86 -0.7
205,124 + AO353_00895 0.86 +1.3
205,124 + AO353_00895 0.86 +1.0
205,124 + AO353_00895 0.86 +0.0
205,124 + AO353_00895 0.86 +0.3
205,124 + AO353_00895 0.86 -0.5
205,125 - AO353_00895 0.86 +0.3
205,125 - AO353_00895 0.86 +0.3
205,125 - AO353_00895 0.86 +2.3
205,125 - AO353_00895 0.86 -0.5
205,125 - AO353_00895 0.86 +1.3
205,172 + +1.3
205,182 - -0.1
205,208 - -1.2
205,265 - -0.2
205,265 - -0.7
205,324 + +1.8
205,324 + -1.5
205,324 + +0.1
205,324 + -0.5
205,325 - +0.3
205,341 - -2.9
205,417 - -2.2
205,485 + AO353_00900 0.15 -1.5
205,485 + AO353_00900 0.15 -1.7
205,486 - AO353_00900 0.15 -0.2
205,486 - AO353_00900 0.15 -1.2
205,578 + AO353_00900 0.26 +0.0
205,579 - AO353_00900 0.26 +0.0
205,579 - AO353_00900 0.26 -0.5
205,579 - AO353_00900 0.26 -0.5
205,650 + AO353_00900 0.34 -0.8
205,650 + AO353_00900 0.34 -1.0
205,650 + AO353_00900 0.34 +1.3
205,650 + AO353_00900 0.34 -1.7
205,650 + AO353_00900 0.34 +0.0
205,650 + AO353_00900 0.34 -0.7
205,650 + AO353_00900 0.34 -0.0
205,650 + +2.8
205,651 - AO353_00900 0.34 -0.4
205,651 - AO353_00900 0.34 -0.5
205,651 - AO353_00900 0.34 -1.4
205,651 - AO353_00900 0.34 -0.7
205,651 - AO353_00900 0.34 -1.2
205,651 - AO353_00900 0.34 -0.2
205,651 - AO353_00900 0.34 -0.5
205,651 - AO353_00900 0.34 -0.2
205,651 - AO353_00900 0.34 -2.5
205,651 - AO353_00900 0.34 +0.9
205,651 - AO353_00900 0.34 +0.0
205,651 - -0.2
205,651 - AO353_00900 0.34 -1.0
205,651 - AO353_00900 0.34 -0.6
205,651 - AO353_00900 0.34 -0.8
205,670 - AO353_00900 0.36 -2.1
205,670 - AO353_00900 0.36 -1.7
205,852 + AO353_00900 0.56 -1.2
206,024 + AO353_00900 0.76 +0.0
206,024 + AO353_00900 0.76 -1.0
206,109 + AO353_00900 0.85 -0.2
206,109 + AO353_00900 0.85 -0.2
206,110 - AO353_00900 0.85 +0.3
206,110 - AO353_00900 0.85 +0.3
206,110 - AO353_00900 0.85 -1.0
206,110 - AO353_00900 0.85 +1.3
206,110 - AO353_00900 0.85 -0.2
206,110 - AO353_00900 0.85 +0.0
206,110 - AO353_00900 0.85 -0.2
206,110 - AO353_00900 0.85 +0.0
206,110 - AO353_00900 0.85 -0.5
206,110 - AO353_00900 0.85 -2.4
206,110 - +0.3
206,110 - +1.3
206,113 + AO353_00900 0.85 -0.7
206,113 + AO353_00900 0.85 -0.2
206,113 + AO353_00900 0.85 -1.1
206,286 - +0.6
206,441 + AO353_00905 0.28 +0.0
206,442 - AO353_00905 0.28 +3.3
206,442 - AO353_00905 0.28 -1.7
206,459 + AO353_00905 0.30 +1.1
206,459 + AO353_00905 0.30 -2.5
206,460 - AO353_00905 0.31 +1.0
206,550 - AO353_00905 0.43 +1.6
206,688 - AO353_00905 0.62 +1.6
206,734 + AO353_00905 0.68 +0.0
206,735 - AO353_00905 0.69 +0.8
206,814 - AO353_00905 0.80 +0.9
207,054 + -1.7
207,067 + -2.3
207,067 + -1.6
207,068 - +2.2
207,068 - +0.8
207,075 - +2.9
207,078 + -1.0
207,079 - +1.0
207,079 - +1.0
207,106 - +2.8
207,106 - +2.4
207,119 + -0.6
207,120 - +1.3
207,120 - +3.1
207,120 - +2.2
207,120 - +2.5
207,120 - +2.9
207,120 - +2.6
207,153 - +2.3
207,164 + +1.2
207,165 - +5.2
207,165 - +1.3
207,165 - +2.3
207,165 - +3.1
207,165 - +2.7
207,165 - +1.8
207,165 - +1.8
207,231 + +0.1
207,231 + -0.7
207,231 + +0.2
207,231 + -0.9
207,232 - +1.1
207,232 - +0.8
207,232 - +4.3
207,232 - +2.5
207,232 - +3.0
207,232 - +3.6

Or see this region's nucleotide sequence