Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00685 and AO353_00690 are separated by 146 nucleotides AO353_00690 and AO353_00695 are separated by 3 nucleotides
AO353_00685: AO353_00685 - DNA polymerase III subunit gamma/tau, at 144,325 to 146,433
_00685
AO353_00690: AO353_00690 - amino acid ABC transporter substrate-binding protein, at 146,580 to 147,338
_00690
AO353_00695: AO353_00695 - diguanylate cyclase, at 147,342 to 149,042
_00695
Position (kb) 146
147
148 Strain fitness (log2 ratio) -2
-1
0
1
2 at 146.512 kb on + strand at 146.521 kb on + strand at 146.529 kb on + strand at 146.530 kb on - strand at 146.579 kb on + strand at 146.721 kb on + strand, within AO353_00690 at 146.721 kb on + strand, within AO353_00690 at 146.721 kb on + strand, within AO353_00690 at 146.836 kb on - strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.875 kb on - strand, within AO353_00690 at 146.875 kb on - strand, within AO353_00690 at 146.984 kb on - strand, within AO353_00690 at 147.092 kb on + strand, within AO353_00690 at 147.100 kb on - strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.205 kb on - strand, within AO353_00690 at 147.205 kb on - strand, within AO353_00690 at 147.212 kb on + strand, within AO353_00690 at 147.301 kb on - strand at 147.301 kb on - strand at 147.337 kb on - strand at 147.337 kb on - strand at 147.439 kb on + strand at 147.439 kb on + strand at 147.440 kb on - strand at 147.451 kb on - strand at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.605 kb on + strand, within AO353_00695 at 147.606 kb on - strand, within AO353_00695 at 147.644 kb on - strand, within AO353_00695 at 147.737 kb on + strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.328 kb on - strand, within AO353_00695
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 146,512 + -0.7 146,521 + +0.2 146,529 + -2.6 146,530 - -2.2 146,579 + -2.0 146,721 + AO353_00690 0.19 +0.3 146,721 + AO353_00690 0.19 -0.7 146,721 + AO353_00690 0.19 -1.6 146,836 - AO353_00690 0.34 -0.5 146,874 + AO353_00690 0.39 +0.9 146,874 + AO353_00690 0.39 -0.1 146,874 + AO353_00690 0.39 -1.9 146,875 - AO353_00690 0.39 +0.9 146,875 - AO353_00690 0.39 +0.0 146,984 - AO353_00690 0.53 -1.2 147,092 + AO353_00690 0.67 -0.8 147,100 - AO353_00690 0.69 +0.4 147,204 + AO353_00690 0.82 -0.8 147,204 + AO353_00690 0.82 -1.5 147,204 + AO353_00690 0.82 -1.0 147,204 + AO353_00690 0.82 -1.7 147,205 - AO353_00690 0.82 +1.0 147,205 - AO353_00690 0.82 +0.0 147,212 + AO353_00690 0.83 +0.0 147,301 - -0.7 147,301 - -0.2 147,337 - +1.6 147,337 - +0.8 147,439 + +1.7 147,439 + +0.2 147,440 - +0.3 147,451 - +0.4 147,585 + AO353_00695 0.14 +1.3 147,585 + AO353_00695 0.14 -1.2 147,585 + AO353_00695 0.14 +0.7 147,585 + AO353_00695 0.14 +0.2 147,585 + AO353_00695 0.14 +0.7 147,585 + AO353_00695 0.14 +0.2 147,585 + AO353_00695 0.14 +0.8 147,585 + AO353_00695 0.14 -0.9 147,586 - AO353_00695 0.14 -1.2 147,586 - AO353_00695 0.14 -1.0 147,586 - AO353_00695 0.14 -0.3 147,586 - AO353_00695 0.14 -1.1 147,605 + AO353_00695 0.15 -2.1 147,606 - AO353_00695 0.16 +2.1 147,644 - AO353_00695 0.18 -1.1 147,737 + AO353_00695 0.23 +0.2 147,738 - AO353_00695 0.23 +0.3 147,738 - AO353_00695 0.23 -0.1 147,738 - AO353_00695 0.23 +0.2 147,738 - AO353_00695 0.23 -1.2 148,216 + AO353_00695 0.51 +0.0 148,216 + AO353_00695 0.51 -0.8 148,216 + AO353_00695 0.51 +0.4 148,216 + AO353_00695 0.51 +0.2 148,216 + AO353_00695 0.51 -0.4 148,216 + AO353_00695 0.51 -0.9 148,216 + AO353_00695 0.51 +1.5 148,216 + AO353_00695 0.51 -1.5 148,216 + AO353_00695 0.51 +0.8 148,216 + AO353_00695 0.51 -1.7 148,216 + AO353_00695 0.51 +1.2 148,217 - AO353_00695 0.51 -2.1 148,217 - AO353_00695 0.51 +0.3 148,217 - AO353_00695 0.51 -2.4 148,217 - AO353_00695 0.51 +0.1 148,217 - AO353_00695 0.51 -0.8 148,217 - AO353_00695 0.51 -1.9 148,217 - AO353_00695 0.51 -1.5 148,328 - AO353_00695 0.58 -1.5
Or see this region's nucleotide sequence