Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00030

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00025 and AO353_00030 are separated by 47 nucleotidesAO353_00030 and AO353_00035 are separated by 329 nucleotides AO353_00025: AO353_00025 - phenazine biosynthesis protein PhzF, at 5,006 to 5,848 _00025 AO353_00030: AO353_00030 - glutathione S-transferase, at 5,896 to 6,594 _00030 AO353_00035: AO353_00035 - GTP-binding protein, at 6,924 to 7,598 _00035 Position (kb) 5 6 7Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 4.904 kb on + strandat 4.904 kb on + strandat 4.904 kb on + strandat 4.905 kb on - strandat 4.905 kb on - strandat 4.933 kb on + strandat 4.933 kb on + strandat 4.933 kb on + strandat 4.934 kb on - strandat 4.934 kb on - strandat 4.950 kb on + strandat 4.951 kb on - strandat 5.007 kb on + strandat 5.127 kb on + strand, within AO353_00025at 5.127 kb on + strand, within AO353_00025at 5.127 kb on + strand, within AO353_00025at 5.127 kb on + strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.223 kb on - strand, within AO353_00025at 5.405 kb on - strand, within AO353_00025at 5.405 kb on - strand, within AO353_00025at 5.405 kb on - strand, within AO353_00025at 5.859 kb on + strandat 5.859 kb on + strandat 5.869 kb on + strandat 5.962 kb on + strandat 5.962 kb on + strandat 5.962 kb on + strandat 5.963 kb on - strandat 6.005 kb on + strand, within AO353_00030at 6.005 kb on + strand, within AO353_00030at 6.005 kb on + strand, within AO353_00030at 6.005 kb on + strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.059 kb on + strand, within AO353_00030at 6.111 kb on + strand, within AO353_00030at 6.111 kb on + strandat 6.112 kb on - strand, within AO353_00030at 6.112 kb on - strand, within AO353_00030at 6.164 kb on + strand, within AO353_00030at 6.164 kb on + strand, within AO353_00030at 6.165 kb on - strand, within AO353_00030at 6.183 kb on + strand, within AO353_00030at 6.184 kb on - strand, within AO353_00030at 6.257 kb on + strand, within AO353_00030at 6.308 kb on + strand, within AO353_00030at 6.308 kb on + strand, within AO353_00030at 6.308 kb on + strand, within AO353_00030at 6.524 kb on + strand, within AO353_00030at 6.525 kb on - strandat 6.532 kb on + strandat 6.532 kb on + strandat 6.533 kb on - strandat 6.669 kb on - strandat 6.669 kb on - strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.674 kb on - strandat 6.674 kb on - strandat 6.674 kb on - strandat 6.674 kb on - strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.676 kb on - strandat 6.676 kb on - strandat 6.676 kb on - strandat 6.702 kb on - strandat 6.702 kb on - strandat 6.755 kb on + strandat 6.755 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.761 kb on - strandat 6.761 kb on - strandat 6.761 kb on - strandat 6.917 kb on + strandat 6.917 kb on + strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.947 kb on + strandat 6.947 kb on + strandat 7.156 kb on + strand, within AO353_00035at 7.156 kb on + strand, within AO353_00035at 7.157 kb on - strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.243 kb on - strand, within AO353_00035at 7.248 kb on + strand, within AO353_00035at 7.248 kb on + strand, within AO353_00035at 7.248 kb on + strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.351 kb on + strand, within AO353_00035at 7.352 kb on - strand, within AO353_00035at 7.365 kb on + strand, within AO353_00035at 7.365 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.384 kb on - strandat 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.404 kb on + strand, within AO353_00035at 7.405 kb on - strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.554 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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4,904 + +1.3
4,904 + -2.5
4,904 + +0.6
4,905 - -1.2
4,905 - -0.5
4,933 + +0.1
4,933 + +1.0
4,933 + +0.6
4,934 - +3.8
4,934 - -1.1
4,950 + +1.3
4,951 - -1.2
5,007 + +0.7
5,127 + AO353_00025 0.14 -1.1
5,127 + AO353_00025 0.14 -0.5
5,127 + AO353_00025 0.14 -0.5
5,127 + AO353_00025 0.14 -0.2
5,128 - AO353_00025 0.14 +1.9
5,128 - AO353_00025 0.14 +0.8
5,128 - AO353_00025 0.14 -0.5
5,128 - AO353_00025 0.14 -2.4
5,223 - AO353_00025 0.26 -0.7
5,405 - AO353_00025 0.47 -2.0
5,405 - AO353_00025 0.47 +0.0
5,405 - AO353_00025 0.47 +0.2
5,859 + +1.3
5,859 + +0.9
5,869 + -0.1
5,962 + +0.8
5,962 + +0.7
5,962 + +1.3
5,963 - +0.8
6,005 + AO353_00030 0.16 +0.5
6,005 + AO353_00030 0.16 +2.8
6,005 + AO353_00030 0.16 +2.1
6,005 + AO353_00030 0.16 +1.7
6,006 - AO353_00030 0.16 -1.5
6,006 - AO353_00030 0.16 -1.2
6,006 - AO353_00030 0.16 -0.7
6,006 - AO353_00030 0.16 -1.4
6,006 - AO353_00030 0.16 +0.1
6,059 + AO353_00030 0.23 +2.7
6,111 + AO353_00030 0.31 +2.6
6,111 + +5.3
6,112 - AO353_00030 0.31 -0.1
6,112 - AO353_00030 0.31 -0.7
6,164 + AO353_00030 0.38 +3.7
6,164 + AO353_00030 0.38 +5.5
6,165 - AO353_00030 0.38 -0.5
6,183 + AO353_00030 0.41 +3.7
6,184 - AO353_00030 0.41 -0.4
6,257 + AO353_00030 0.52 +3.8
6,308 + AO353_00030 0.59 +4.7
6,308 + AO353_00030 0.59 +3.0
6,308 + AO353_00030 0.59 +3.8
6,524 + AO353_00030 0.90 +3.9
6,525 - -0.8
6,532 + +3.6
6,532 + +4.4
6,533 - -3.0
6,669 - +0.3
6,669 - +3.3
6,673 + +4.6
6,673 + +6.0
6,673 + +5.1
6,673 + +5.7
6,673 + +5.9
6,673 + +6.0
6,674 - -0.2
6,674 - -1.2
6,674 - +0.2
6,674 - -0.6
6,675 + +6.3
6,675 + +5.4
6,675 + +4.2
6,675 + +5.7
6,675 + +4.9
6,675 + +6.7
6,675 + +5.8
6,676 - +0.3
6,676 - +0.8
6,676 - +0.8
6,702 - -0.6
6,702 - +0.5
6,755 + +5.6
6,755 + +3.9
6,760 + +3.2
6,760 + +6.5
6,760 + +6.3
6,760 + +5.6
6,760 + +5.8
6,761 - -1.4
6,761 - -0.2
6,761 - -1.0
6,917 + +7.1
6,917 + +6.0
6,918 - -0.3
6,918 - +0.5
6,918 - +0.0
6,918 - +0.9
6,918 - +0.8
6,918 - -0.9
6,947 + -2.2
6,947 + -1.4
7,156 + AO353_00035 0.34 -1.0
7,156 + AO353_00035 0.34 -0.9
7,157 - AO353_00035 0.35 -0.8
7,185 + AO353_00035 0.39 -1.4
7,185 + AO353_00035 0.39 -0.5
7,185 + AO353_00035 0.39 -0.7
7,185 + AO353_00035 0.39 -1.5
7,185 + AO353_00035 0.39 +0.8
7,185 + AO353_00035 0.39 +0.8
7,185 + AO353_00035 0.39 -1.2
7,186 - AO353_00035 0.39 -0.8
7,186 - AO353_00035 0.39 -0.2
7,186 - AO353_00035 0.39 -1.6
7,186 - AO353_00035 0.39 +0.1
7,186 - AO353_00035 0.39 -1.6
7,242 + AO353_00035 0.47 -0.2
7,242 + AO353_00035 0.47 +0.5
7,242 + AO353_00035 0.47 -0.7
7,242 + AO353_00035 0.47 -0.5
7,242 + AO353_00035 0.47 -0.5
7,243 - AO353_00035 0.47 -2.4
7,248 + AO353_00035 0.48 -0.5
7,248 + AO353_00035 0.48 +0.1
7,248 + AO353_00035 0.48 +0.2
7,249 - AO353_00035 0.48 -0.4
7,249 - AO353_00035 0.48 -1.7
7,249 - AO353_00035 0.48 -0.4
7,249 - AO353_00035 0.48 -0.7
7,249 - AO353_00035 0.48 -0.2
7,249 - AO353_00035 0.48 -0.1
7,351 + AO353_00035 0.63 +1.7
7,352 - AO353_00035 0.63 -0.2
7,365 + AO353_00035 0.65 -1.0
7,365 + AO353_00035 0.65 -1.6
7,383 + AO353_00035 0.68 -1.1
7,383 + AO353_00035 0.68 +0.0
7,383 + AO353_00035 0.68 +2.0
7,383 + AO353_00035 0.68 -0.5
7,383 + AO353_00035 0.68 -1.7
7,383 + AO353_00035 0.68 -2.1
7,383 + AO353_00035 0.68 -1.0
7,384 - +0.8
7,384 - AO353_00035 0.68 -0.5
7,384 - AO353_00035 0.68 -1.8
7,384 - AO353_00035 0.68 -0.2
7,384 - AO353_00035 0.68 -2.4
7,384 - AO353_00035 0.68 -1.2
7,384 - AO353_00035 0.68 -0.7
7,384 - AO353_00035 0.68 -2.2
7,384 - AO353_00035 0.68 -2.4
7,384 - AO353_00035 0.68 -1.7
7,404 + AO353_00035 0.71 -1.1
7,405 - AO353_00035 0.71 -1.9
7,500 + AO353_00035 0.85 +0.4
7,500 + AO353_00035 0.85 +0.3
7,500 + AO353_00035 0.85 -0.7
7,500 + AO353_00035 0.85 -0.7
7,500 + AO353_00035 0.85 -0.8
7,501 - AO353_00035 0.85 -0.5
7,501 - AO353_00035 0.85 +0.2
7,501 - AO353_00035 0.85 +0.3
7,501 - AO353_00035 0.85 -0.5
7,501 - AO353_00035 0.85 +0.7
7,501 - AO353_00035 0.85 -2.0
7,501 - AO353_00035 0.85 -0.7
7,501 - AO353_00035 0.85 +0.0
7,501 - AO353_00035 0.85 -0.5
7,554 + -1.0

Or see this region's nucleotide sequence