Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00005

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00005 and AO353_00010 are separated by 37 nucleotides AO353_00005: AO353_00005 - isoprenylcysteine carboxyl methyltransferase, at 379 to 1,038 _00005 AO353_00010: AO353_00010 - hypothetical protein, at 1,076 to 2,173 _00010 Position (kb) 0 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 0.324 kb on - strandat 0.324 kb on - strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.350 kb on - strandat 0.351 kb on + strandat 0.351 kb on + strandat 0.351 kb on + strandat 0.351 kb on + strandat 0.351 kb on + strandat 0.352 kb on - strandat 0.352 kb on - strandat 0.352 kb on - strandat 0.352 kb on - strandat 0.352 kb on - strandat 0.430 kb on + strandat 0.430 kb on + strandat 0.430 kb on + strandat 0.430 kb on + strandat 0.431 kb on - strandat 0.431 kb on - strandat 0.566 kb on + strand, within AO353_00005at 0.602 kb on + strand, within AO353_00005at 0.603 kb on - strand, within AO353_00005at 0.603 kb on - strand, within AO353_00005at 0.643 kb on + strand, within AO353_00005at 0.686 kb on + strand, within AO353_00005at 0.686 kb on + strand, within AO353_00005at 0.686 kb on + strand, within AO353_00005at 0.686 kb on + strand, within AO353_00005at 0.686 kb on + strand, within AO353_00005at 0.687 kb on - strand, within AO353_00005at 0.687 kb on - strand, within AO353_00005at 0.687 kb on - strand, within AO353_00005at 0.687 kb on - strand, within AO353_00005at 0.707 kb on + strand, within AO353_00005at 0.707 kb on + strand, within AO353_00005at 0.708 kb on - strand, within AO353_00005at 0.708 kb on - strand, within AO353_00005at 0.750 kb on - strand, within AO353_00005at 0.795 kb on + strand, within AO353_00005at 0.795 kb on + strand, within AO353_00005at 0.795 kb on + strand, within AO353_00005at 0.796 kb on - strand, within AO353_00005at 0.796 kb on - strand, within AO353_00005at 0.813 kb on + strand, within AO353_00005at 0.817 kb on + strand, within AO353_00005at 0.818 kb on - strand, within AO353_00005at 0.842 kb on - strand, within AO353_00005at 0.851 kb on + strand, within AO353_00005at 0.851 kb on + strand, within AO353_00005at 0.852 kb on - strand, within AO353_00005at 0.945 kb on - strand, within AO353_00005at 0.989 kb on - strandat 0.997 kb on + strandat 0.997 kb on + strandat 0.997 kb on + strandat 0.997 kb on + strandat 0.997 kb on + strandat 0.998 kb on - strandat 0.998 kb on - strandat 0.998 kb on - strandat 0.998 kb on - strandat 1.033 kb on + strandat 1.033 kb on + strandat 1.071 kb on + strandat 1.071 kb on + strandat 1.071 kb on + strandat 1.072 kb on - strandat 1.072 kb on - strandat 1.072 kb on - strandat 1.078 kb on - strandat 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.251 kb on + strand, within AO353_00010at 1.251 kb on + strand, within AO353_00010at 1.251 kb on + strand, within AO353_00010at 1.251 kb on + strand, within AO353_00010at 1.251 kb on + strand, within AO353_00010at 1.252 kb on - strand, within AO353_00010at 1.252 kb on - strand, within AO353_00010at 1.252 kb on - strand, within AO353_00010at 1.252 kb on - strand, within AO353_00010at 1.253 kb on + strand, within AO353_00010at 1.253 kb on + strand, within AO353_00010at 1.253 kb on + strand, within AO353_00010at 1.253 kb on + strand, within AO353_00010at 1.253 kb on + strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.312 kb on + strand, within AO353_00010at 1.312 kb on + strand, within AO353_00010at 1.312 kb on + strand, within AO353_00010at 1.313 kb on - strand, within AO353_00010at 1.497 kb on + strand, within AO353_00010at 1.498 kb on - strand, within AO353_00010at 1.512 kb on + strand, within AO353_00010at 1.512 kb on + strand, within AO353_00010at 1.513 kb on - strand, within AO353_00010at 1.513 kb on - strand, within AO353_00010at 1.513 kb on - strand, within AO353_00010at 1.540 kb on + strand, within AO353_00010at 1.541 kb on - strand, within AO353_00010at 1.541 kb on - strand, within AO353_00010at 1.541 kb on - strand, within AO353_00010at 1.541 kb on - strand, within AO353_00010at 1.551 kb on + strand, within AO353_00010at 1.551 kb on + strand, within AO353_00010at 1.551 kb on + strand, within AO353_00010at 1.551 kb on + strand, within AO353_00010at 1.551 kb on + strand, within AO353_00010at 1.552 kb on - strand, within AO353_00010at 1.552 kb on - strand, within AO353_00010at 1.552 kb on - strand, within AO353_00010at 1.552 kb on - strand, within AO353_00010at 1.552 kb on - strand, within AO353_00010at 1.552 kb on - strand, within AO353_00010at 1.612 kb on - strand, within AO353_00010at 1.666 kb on + strand, within AO353_00010at 1.666 kb on + strand, within AO353_00010at 1.688 kb on - strand, within AO353_00010at 1.688 kb on - strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.002 kb on - strand, within AO353_00010at 2.002 kb on - strand, within AO353_00010at 2.002 kb on - strand, within AO353_00010at 2.002 kb on - strand, within AO353_00010at 2.002 kb on - strand, within AO353_00010

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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324 - -1.0
324 - +0.9
347 + +0.0
347 + +0.6
347 + -0.5
347 + +0.2
347 + +0.0
347 + +0.9
347 + -1.8
347 + -2.0
347 + -1.4
347 + -0.5
347 + -1.7
347 + +0.8
347 + +0.7
347 + +1.6
347 + -0.1
347 + +1.6
347 + -0.2
347 + +0.6
347 + -0.2
347 + -0.7
347 + +0.8
348 - +1.8
348 - -1.2
348 - +0.3
348 - +0.0
348 - -0.5
348 - +0.5
348 - +0.5
348 - +1.7
348 - -1.1
348 - -0.7
348 - -0.8
348 - -2.0
348 - +0.6
348 - +0.5
349 + +0.0
349 + +0.2
349 + -0.7
349 + +0.2
349 + -0.2
349 + -0.2
349 + +1.3
349 + +0.3
349 + +2.3
349 + -0.4
349 + +0.0
349 + -0.7
349 + +0.5
349 + -1.1
350 - +0.8
351 + +0.9
351 + +0.1
351 + +0.6
351 + -0.9
351 + -0.4
352 - -2.2
352 - +0.5
352 - -1.1
352 - +0.3
352 - -0.2
430 + -1.1
430 + +0.5
430 + -1.2
430 + +1.0
431 - -2.0
431 - -0.5
566 + AO353_00005 0.28 -1.0
602 + AO353_00005 0.34 -0.7
603 - AO353_00005 0.34 -0.5
603 - AO353_00005 0.34 +0.4
643 + AO353_00005 0.40 +1.0
686 + AO353_00005 0.47 -2.0
686 + AO353_00005 0.47 -1.0
686 + AO353_00005 0.47 -0.8
686 + AO353_00005 0.47 -0.5
686 + AO353_00005 0.47 -1.0
687 - AO353_00005 0.47 -0.7
687 - AO353_00005 0.47 -0.7
687 - AO353_00005 0.47 -0.5
687 - AO353_00005 0.47 +0.0
707 + AO353_00005 0.50 +0.7
707 + AO353_00005 0.50 -1.1
708 - AO353_00005 0.50 -0.7
708 - AO353_00005 0.50 -2.8
750 - AO353_00005 0.56 -0.7
795 + AO353_00005 0.63 -0.2
795 + AO353_00005 0.63 -1.4
795 + AO353_00005 0.63 +0.3
796 - AO353_00005 0.63 -0.7
796 - AO353_00005 0.63 +1.1
813 + AO353_00005 0.66 +0.8
817 + AO353_00005 0.66 +1.1
818 - AO353_00005 0.67 -0.3
842 - AO353_00005 0.70 +0.0
851 + AO353_00005 0.72 -0.7
851 + AO353_00005 0.72 +2.6
852 - AO353_00005 0.72 -1.7
945 - AO353_00005 0.86 -1.0
989 - +0.3
997 + +1.8
997 + +0.3
997 + +0.8
997 + -0.8
997 + +0.8
998 - -0.8
998 - -0.6
998 - -1.0
998 - -0.7
1,033 + -0.4
1,033 + -0.4
1,071 + +0.2
1,071 + +0.0
1,071 + +0.5
1,072 - -0.1
1,072 - +0.0
1,072 - -0.2
1,078 - +0.5
1,249 + AO353_00010 0.16 -0.7
1,249 + AO353_00010 0.16 +0.5
1,249 + AO353_00010 0.16 -1.6
1,249 + AO353_00010 0.16 -1.6
1,249 + AO353_00010 0.16 +0.0
1,249 + AO353_00010 0.16 -0.8
1,249 + AO353_00010 0.16 +0.0
1,249 + AO353_00010 0.16 +0.3
1,249 + AO353_00010 0.16 +0.0
1,249 + AO353_00010 0.16 -1.2
1,249 + AO353_00010 0.16 -0.4
1,249 + AO353_00010 0.16 -1.0
1,249 + AO353_00010 0.16 +1.0
1,249 + AO353_00010 0.16 -1.6
1,249 + AO353_00010 0.16 +0.4
1,249 + AO353_00010 0.16 -0.2
1,249 + AO353_00010 0.16 +0.4
1,249 + AO353_00010 0.16 +2.0
1,249 + AO353_00010 0.16 -0.5
1,249 + AO353_00010 0.16 +0.3
1,249 + AO353_00010 0.16 -1.7
1,249 + AO353_00010 0.16 -0.7
1,249 + AO353_00010 0.16 +0.5
1,250 - AO353_00010 0.16 +1.6
1,250 - AO353_00010 0.16 +1.1
1,250 - AO353_00010 0.16 +0.5
1,250 - AO353_00010 0.16 -0.4
1,250 - AO353_00010 0.16 +0.0
1,250 - AO353_00010 0.16 -0.1
1,250 - AO353_00010 0.16 -1.5
1,250 - AO353_00010 0.16 +1.3
1,250 - AO353_00010 0.16 +0.8
1,250 - AO353_00010 0.16 -1.9
1,250 - AO353_00010 0.16 +0.0
1,250 - AO353_00010 0.16 +0.5
1,250 - AO353_00010 0.16 -0.2
1,250 - AO353_00010 0.16 +0.5
1,250 - AO353_00010 0.16 -0.7
1,250 - AO353_00010 0.16 -1.0
1,250 - AO353_00010 0.16 -1.4
1,250 - AO353_00010 0.16 -0.3
1,250 - AO353_00010 0.16 -1.6
1,250 - AO353_00010 0.16 -0.5
1,250 - AO353_00010 0.16 -0.2
1,250 - AO353_00010 0.16 -0.4
1,250 - AO353_00010 0.16 +1.0
1,251 + AO353_00010 0.16 +1.1
1,251 + AO353_00010 0.16 -2.1
1,251 + AO353_00010 0.16 -2.2
1,251 + AO353_00010 0.16 -0.8
1,251 + AO353_00010 0.16 +1.0
1,252 - AO353_00010 0.16 -0.4
1,252 - AO353_00010 0.16 -0.7
1,252 - AO353_00010 0.16 -1.7
1,252 - AO353_00010 0.16 -1.0
1,253 + AO353_00010 0.16 -0.9
1,253 + AO353_00010 0.16 -0.5
1,253 + AO353_00010 0.16 +1.3
1,253 + AO353_00010 0.16 +0.0
1,253 + AO353_00010 0.16 +0.3
1,254 - AO353_00010 0.16 -1.5
1,254 - AO353_00010 0.16 -1.1
1,254 - AO353_00010 0.16 -0.1
1,254 - AO353_00010 0.16 -1.7
1,254 - AO353_00010 0.16 +0.8
1,254 - AO353_00010 0.16 -0.5
1,254 - AO353_00010 0.16 +1.3
1,254 - AO353_00010 0.16 -0.7
1,254 - AO353_00010 0.16 +1.8
1,312 + AO353_00010 0.21 +0.8
1,312 + AO353_00010 0.21 +0.3
1,312 + AO353_00010 0.21 -0.2
1,313 - AO353_00010 0.22 -0.2
1,497 + AO353_00010 0.38 -0.2
1,498 - AO353_00010 0.38 +1.1
1,512 + AO353_00010 0.40 +0.5
1,512 + AO353_00010 0.40 -2.0
1,513 - AO353_00010 0.40 +2.8
1,513 - AO353_00010 0.40 -1.1
1,513 - AO353_00010 0.40 -0.5
1,540 + AO353_00010 0.42 -0.7
1,541 - AO353_00010 0.42 +2.3
1,541 - AO353_00010 0.42 +2.1
1,541 - AO353_00010 0.42 +0.5
1,541 - AO353_00010 0.42 +0.5
1,551 + AO353_00010 0.43 +0.1
1,551 + AO353_00010 0.43 +0.5
1,551 + AO353_00010 0.43 -0.5
1,551 + AO353_00010 0.43 -0.8
1,551 + AO353_00010 0.43 -0.7
1,552 - AO353_00010 0.43 -0.6
1,552 - AO353_00010 0.43 -0.5
1,552 - AO353_00010 0.43 +0.3
1,552 - AO353_00010 0.43 +0.1
1,552 - AO353_00010 0.43 +1.0
1,552 - AO353_00010 0.43 +1.2
1,612 - AO353_00010 0.49 -0.8
1,666 + AO353_00010 0.54 +0.8
1,666 + AO353_00010 0.54 -1.2
1,688 - AO353_00010 0.56 -0.8
1,688 - AO353_00010 0.56 -1.0
2,001 + AO353_00010 0.84 -0.7
2,001 + AO353_00010 0.84 -0.6
2,001 + AO353_00010 0.84 -0.7
2,001 + AO353_00010 0.84 -0.4
2,001 + AO353_00010 0.84 -1.0
2,001 + AO353_00010 0.84 +0.5
2,001 + AO353_00010 0.84 -2.2
2,001 + AO353_00010 0.84 +0.3
2,001 + AO353_00010 0.84 -1.1
2,001 + AO353_00010 0.84 -0.7
2,001 + AO353_00010 0.84 +1.8
2,001 + AO353_00010 0.84 +1.7
2,002 - AO353_00010 0.84 +0.8
2,002 - AO353_00010 0.84 +1.1
2,002 - AO353_00010 0.84 -0.1
2,002 - AO353_00010 0.84 -0.8
2,002 - AO353_00010 0.84 +1.6

Or see this region's nucleotide sequence