Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS22250

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS22245 and ABZR86_RS22250 overlap by 4 nucleotides ABZR86_RS22245: ABZR86_RS22245 - flagellar hook-length control protein FliK, at 411,255 to 412,394 _RS22245 ABZR86_RS22250: ABZR86_RS22250 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 412,391 to 412,657 _RS22250 Position (kb) 412 413Strain fitness (log2 ratio) -2 -1 0 1at 411.568 kb on - strand, within ABZR86_RS22245at 411.568 kb on - strand, within ABZR86_RS22245at 412.250 kb on + strand, within ABZR86_RS22245at 412.250 kb on + strand, within ABZR86_RS22245at 412.250 kb on + strand, within ABZR86_RS22245at 412.251 kb on - strand, within ABZR86_RS22245at 412.251 kb on - strand, within ABZR86_RS22245at 412.601 kb on + strand, within ABZR86_RS22250at 412.601 kb on + strand, within ABZR86_RS22250at 412.601 kb on + strand, within ABZR86_RS22250at 412.602 kb on - strand, within ABZR86_RS22250at 412.602 kb on - strand, within ABZR86_RS22250at 412.602 kb on - strand, within ABZR86_RS22250at 412.602 kb on - strand, within ABZR86_RS22250at 412.602 kb on - strand, within ABZR86_RS22250at 412.635 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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411,568 - ABZR86_RS22245 0.27 +1.4
411,568 - ABZR86_RS22245 0.27 -0.5
412,250 + ABZR86_RS22245 0.87 -1.5
412,250 + ABZR86_RS22245 0.87 +0.1
412,250 + ABZR86_RS22245 0.87 +0.6
412,251 - ABZR86_RS22245 0.87 -0.1
412,251 - ABZR86_RS22245 0.87 +0.8
412,601 + ABZR86_RS22250 0.79 +0.5
412,601 + ABZR86_RS22250 0.79 +0.2
412,601 + ABZR86_RS22250 0.79 -0.0
412,602 - ABZR86_RS22250 0.79 +0.9
412,602 - ABZR86_RS22250 0.79 +0.3
412,602 - ABZR86_RS22250 0.79 -0.7
412,602 - ABZR86_RS22250 0.79 -2.1
412,602 - ABZR86_RS22250 0.79 -0.4
412,635 - -0.2

Or see this region's nucleotide sequence