Experiment: perchlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20365 and ABZR86_RS20370 are separated by 88 nucleotides ABZR86_RS20370 and ABZR86_RS20375 are separated by 20 nucleotides ABZR86_RS20375 and ABZR86_RS20380 overlap by 17 nucleotides ABZR86_RS20380 and ABZR86_RS20385 are separated by 169 nucleotides
ABZR86_RS20365: ABZR86_RS20365 - response regulator transcription factor, at 10,576 to 11,238
_RS20365
ABZR86_RS20370: ABZR86_RS20370 - alpha/beta hydrolase, at 11,327 to 12,127
_RS20370
ABZR86_RS20375: ABZR86_RS20375 - nitrilase-related carbon-nitrogen hydrolase, at 12,148 to 13,575
_RS20375
ABZR86_RS20380: ABZR86_RS20380 - TetR/AcrR family transcriptional regulator, at 13,559 to 14,140
_RS20380
ABZR86_RS20385: ABZR86_RS20385 - STAS domain-containing protein, at 14,310 to 14,702
_RS20385
Position (kb) 12
13
14 Strain fitness (log2 ratio) -1
0
1 at 11.234 kb on + strand at 11.234 kb on + strand at 11.625 kb on + strand, within ABZR86_RS20370 at 11.626 kb on - strand, within ABZR86_RS20370 at 11.931 kb on + strand, within ABZR86_RS20370 at 12.243 kb on - strand at 12.243 kb on - strand at 12.243 kb on - strand at 12.486 kb on - strand, within ABZR86_RS20375 at 12.564 kb on - strand, within ABZR86_RS20375 at 12.582 kb on - strand, within ABZR86_RS20375 at 12.941 kb on + strand, within ABZR86_RS20375 at 12.953 kb on + strand, within ABZR86_RS20375 at 12.953 kb on + strand, within ABZR86_RS20375 at 13.190 kb on + strand, within ABZR86_RS20375 at 13.191 kb on - strand, within ABZR86_RS20375 at 13.355 kb on + strand, within ABZR86_RS20375 at 13.355 kb on + strand, within ABZR86_RS20375 at 13.602 kb on + strand at 13.878 kb on + strand, within ABZR86_RS20380 at 13.878 kb on + strand, within ABZR86_RS20380 at 14.301 kb on + strand at 14.301 kb on + strand at 14.302 kb on - strand at 14.311 kb on + strand at 14.312 kb on - strand at 14.350 kb on - strand, within ABZR86_RS20385 at 14.363 kb on - strand, within ABZR86_RS20385 at 14.466 kb on - strand, within ABZR86_RS20385 at 14.466 kb on - strand, within ABZR86_RS20385 at 14.533 kb on + strand, within ABZR86_RS20385
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 75 mM remove 11,234 + -0.5 11,234 + -1.1 11,625 + ABZR86_RS20370 0.37 +0.6 11,626 - ABZR86_RS20370 0.37 +1.2 11,931 + ABZR86_RS20370 0.75 +0.3 12,243 - -0.1 12,243 - -1.3 12,243 - -0.1 12,486 - ABZR86_RS20375 0.24 -1.7 12,564 - ABZR86_RS20375 0.29 +0.1 12,582 - ABZR86_RS20375 0.30 +0.4 12,941 + ABZR86_RS20375 0.56 +0.3 12,953 + ABZR86_RS20375 0.56 +0.9 12,953 + ABZR86_RS20375 0.56 +0.3 13,190 + ABZR86_RS20375 0.73 -0.1 13,191 - ABZR86_RS20375 0.73 -0.1 13,355 + ABZR86_RS20375 0.85 -0.6 13,355 + ABZR86_RS20375 0.85 -0.9 13,602 + +0.6 13,878 + ABZR86_RS20380 0.55 -0.0 13,878 + ABZR86_RS20380 0.55 +0.1 14,301 + +0.5 14,301 + -0.4 14,302 - -0.7 14,311 + +0.4 14,312 - -0.0 14,350 - ABZR86_RS20385 0.10 +0.3 14,363 - ABZR86_RS20385 0.13 -0.2 14,466 - ABZR86_RS20385 0.40 -0.6 14,466 - ABZR86_RS20385 0.40 -0.3 14,533 + ABZR86_RS20385 0.57 +0.2
Or see this region's nucleotide sequence