Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11785

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11775 and ABZR86_RS11780 overlap by 1 nucleotidesABZR86_RS11780 and ABZR86_RS11785 overlap by 4 nucleotidesABZR86_RS11785 and ABZR86_RS11790 are separated by 168 nucleotides ABZR86_RS11775: ABZR86_RS11775 - DUF4381 family protein, at 2,641,380 to 2,641,910 _RS11775 ABZR86_RS11780: ABZR86_RS11780 - DUF58 domain-containing protein, at 2,641,910 to 2,642,848 _RS11780 ABZR86_RS11785: ABZR86_RS11785 - MoxR family ATPase, at 2,642,845 to 2,643,840 _RS11785 ABZR86_RS11790: ABZR86_RS11790 - type IV pilus secretin PilQ, at 2,644,009 to 2,646,201 _RS11790 Position (kb) 2642 2643 2644Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2641.901 kb on + strandat 2642.676 kb on + strand, within ABZR86_RS11780at 2642.677 kb on - strand, within ABZR86_RS11780at 2643.131 kb on + strand, within ABZR86_RS11785at 2643.131 kb on + strand, within ABZR86_RS11785at 2643.131 kb on + strand, within ABZR86_RS11785at 2643.132 kb on - strand, within ABZR86_RS11785at 2643.132 kb on - strand, within ABZR86_RS11785at 2643.132 kb on - strand, within ABZR86_RS11785at 2643.166 kb on + strand, within ABZR86_RS11785at 2643.166 kb on + strand, within ABZR86_RS11785at 2643.166 kb on + strand, within ABZR86_RS11785at 2643.187 kb on + strand, within ABZR86_RS11785at 2643.188 kb on - strand, within ABZR86_RS11785at 2643.188 kb on - strand, within ABZR86_RS11785at 2643.639 kb on + strand, within ABZR86_RS11785at 2643.639 kb on + strand, within ABZR86_RS11785at 2643.639 kb on + strand, within ABZR86_RS11785at 2643.640 kb on - strand, within ABZR86_RS11785at 2643.640 kb on - strand, within ABZR86_RS11785at 2643.793 kb on - strandat 2643.867 kb on + strandat 2643.868 kb on - strandat 2643.933 kb on + strandat 2643.933 kb on + strandat 2643.933 kb on + strandat 2643.933 kb on + strandat 2643.933 kb on + strandat 2643.933 kb on + strandat 2643.933 kb on + strandat 2643.933 kb on + strandat 2644.163 kb on + strandat 2644.163 kb on + strandat 2644.164 kb on - strandat 2644.164 kb on - strandat 2644.164 kb on - strandat 2644.164 kb on - strandat 2644.164 kb on - strandat 2644.164 kb on - strandat 2644.198 kb on + strandat 2644.304 kb on + strand, within ABZR86_RS11790at 2644.305 kb on - strand, within ABZR86_RS11790at 2644.412 kb on + strand, within ABZR86_RS11790at 2644.412 kb on + strand, within ABZR86_RS11790at 2644.544 kb on + strand, within ABZR86_RS11790at 2644.544 kb on + strand, within ABZR86_RS11790at 2644.544 kb on + strand, within ABZR86_RS11790at 2644.544 kb on + strand, within ABZR86_RS11790at 2644.545 kb on - strand, within ABZR86_RS11790at 2644.545 kb on - strand, within ABZR86_RS11790at 2644.545 kb on - strand, within ABZR86_RS11790at 2644.634 kb on + strand, within ABZR86_RS11790at 2644.634 kb on + strand, within ABZR86_RS11790at 2644.634 kb on + strand, within ABZR86_RS11790at 2644.634 kb on + strand, within ABZR86_RS11790at 2644.635 kb on - strand, within ABZR86_RS11790at 2644.635 kb on - strand, within ABZR86_RS11790at 2644.635 kb on - strand, within ABZR86_RS11790at 2644.635 kb on - strand, within ABZR86_RS11790at 2644.635 kb on - strand, within ABZR86_RS11790at 2644.668 kb on + strand, within ABZR86_RS11790at 2644.668 kb on + strand, within ABZR86_RS11790at 2644.668 kb on + strand, within ABZR86_RS11790at 2644.668 kb on + strand, within ABZR86_RS11790at 2644.746 kb on + strand, within ABZR86_RS11790at 2644.746 kb on + strand, within ABZR86_RS11790at 2644.746 kb on + strand, within ABZR86_RS11790at 2644.747 kb on - strand, within ABZR86_RS11790at 2644.771 kb on + strand, within ABZR86_RS11790at 2644.794 kb on + strand, within ABZR86_RS11790

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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2,641,901 + -0.0
2,642,676 + ABZR86_RS11780 0.82 -0.2
2,642,677 - ABZR86_RS11780 0.82 -0.0
2,643,131 + ABZR86_RS11785 0.29 -1.0
2,643,131 + ABZR86_RS11785 0.29 +0.3
2,643,131 + ABZR86_RS11785 0.29 -0.2
2,643,132 - ABZR86_RS11785 0.29 -0.1
2,643,132 - ABZR86_RS11785 0.29 +0.5
2,643,132 - ABZR86_RS11785 0.29 -0.3
2,643,166 + ABZR86_RS11785 0.32 -1.2
2,643,166 + ABZR86_RS11785 0.32 +0.2
2,643,166 + ABZR86_RS11785 0.32 -0.8
2,643,187 + ABZR86_RS11785 0.34 -0.5
2,643,188 - ABZR86_RS11785 0.34 +0.2
2,643,188 - ABZR86_RS11785 0.34 -0.1
2,643,639 + ABZR86_RS11785 0.80 +1.0
2,643,639 + ABZR86_RS11785 0.80 -0.4
2,643,639 + ABZR86_RS11785 0.80 -0.1
2,643,640 - ABZR86_RS11785 0.80 +0.2
2,643,640 - ABZR86_RS11785 0.80 -0.4
2,643,793 - +0.7
2,643,867 + +0.7
2,643,868 - -0.2
2,643,933 + +0.8
2,643,933 + -0.1
2,643,933 + -1.8
2,643,933 + -0.9
2,643,933 + -0.8
2,643,933 + +0.4
2,643,933 + -0.2
2,643,933 + +0.1
2,644,163 + -0.3
2,644,163 + +0.7
2,644,164 - -0.1
2,644,164 - -3.4
2,644,164 - +0.9
2,644,164 - -0.1
2,644,164 - -0.0
2,644,164 - +0.1
2,644,198 + -1.4
2,644,304 + ABZR86_RS11790 0.13 +0.6
2,644,305 - ABZR86_RS11790 0.13 +0.4
2,644,412 + ABZR86_RS11790 0.18 +0.3
2,644,412 + ABZR86_RS11790 0.18 +0.1
2,644,544 + ABZR86_RS11790 0.24 -0.2
2,644,544 + ABZR86_RS11790 0.24 -0.0
2,644,544 + ABZR86_RS11790 0.24 -0.5
2,644,544 + ABZR86_RS11790 0.24 +0.0
2,644,545 - ABZR86_RS11790 0.24 +0.0
2,644,545 - ABZR86_RS11790 0.24 -0.2
2,644,545 - ABZR86_RS11790 0.24 -0.1
2,644,634 + ABZR86_RS11790 0.28 +1.3
2,644,634 + ABZR86_RS11790 0.28 +1.9
2,644,634 + ABZR86_RS11790 0.28 -0.3
2,644,634 + ABZR86_RS11790 0.28 +0.6
2,644,635 - ABZR86_RS11790 0.29 -0.6
2,644,635 - ABZR86_RS11790 0.29 +0.4
2,644,635 - ABZR86_RS11790 0.29 +0.6
2,644,635 - ABZR86_RS11790 0.29 -0.1
2,644,635 - ABZR86_RS11790 0.29 -0.6
2,644,668 + ABZR86_RS11790 0.30 -1.2
2,644,668 + ABZR86_RS11790 0.30 -0.5
2,644,668 + ABZR86_RS11790 0.30 -0.4
2,644,668 + ABZR86_RS11790 0.30 -0.8
2,644,746 + ABZR86_RS11790 0.34 +0.8
2,644,746 + ABZR86_RS11790 0.34 -0.4
2,644,746 + ABZR86_RS11790 0.34 -0.4
2,644,747 - ABZR86_RS11790 0.34 -2.5
2,644,771 + ABZR86_RS11790 0.35 -0.9
2,644,794 + ABZR86_RS11790 0.36 -0.2

Or see this region's nucleotide sequence