Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11770

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11765 and ABZR86_RS11770 overlap by 1 nucleotidesABZR86_RS11770 and ABZR86_RS11775 overlap by 8 nucleotidesABZR86_RS11775 and ABZR86_RS11780 overlap by 1 nucleotides ABZR86_RS11765: ABZR86_RS11765 - VWA domain-containing protein, at 2,638,512 to 2,640,401 _RS11765 ABZR86_RS11770: ABZR86_RS11770 - VWA domain-containing protein, at 2,640,401 to 2,641,387 _RS11770 ABZR86_RS11775: ABZR86_RS11775 - DUF4381 family protein, at 2,641,380 to 2,641,910 _RS11775 ABZR86_RS11780: ABZR86_RS11780 - DUF58 domain-containing protein, at 2,641,910 to 2,642,848 _RS11780 Position (kb) 2640 2641 2642Strain fitness (log2 ratio) -1 0 1at 2639.594 kb on - strand, within ABZR86_RS11765at 2639.594 kb on - strand, within ABZR86_RS11765at 2639.733 kb on + strand, within ABZR86_RS11765at 2639.734 kb on - strand, within ABZR86_RS11765at 2639.986 kb on + strand, within ABZR86_RS11765at 2640.074 kb on + strand, within ABZR86_RS11765at 2640.075 kb on - strand, within ABZR86_RS11765at 2640.137 kb on - strand, within ABZR86_RS11765at 2640.328 kb on + strandat 2640.328 kb on + strandat 2640.723 kb on + strand, within ABZR86_RS11770at 2640.724 kb on - strand, within ABZR86_RS11770at 2640.724 kb on - strand, within ABZR86_RS11770at 2640.945 kb on + strand, within ABZR86_RS11770at 2640.945 kb on + strand, within ABZR86_RS11770at 2640.946 kb on - strand, within ABZR86_RS11770at 2640.946 kb on - strand, within ABZR86_RS11770at 2641.166 kb on + strand, within ABZR86_RS11770at 2641.167 kb on - strand, within ABZR86_RS11770at 2641.627 kb on + strand, within ABZR86_RS11775at 2641.693 kb on + strand, within ABZR86_RS11775at 2641.693 kb on + strand, within ABZR86_RS11775at 2641.693 kb on + strand, within ABZR86_RS11775at 2641.693 kb on + strand, within ABZR86_RS11775at 2641.693 kb on + strand, within ABZR86_RS11775at 2641.693 kb on + strand, within ABZR86_RS11775at 2641.693 kb on + strand, within ABZR86_RS11775at 2641.693 kb on + strand, within ABZR86_RS11775at 2641.693 kb on + strand, within ABZR86_RS11775at 2641.693 kb on + strand, within ABZR86_RS11775at 2641.694 kb on - strand, within ABZR86_RS11775at 2641.694 kb on - strand, within ABZR86_RS11775at 2641.694 kb on - strand, within ABZR86_RS11775at 2641.694 kb on - strand, within ABZR86_RS11775at 2641.694 kb on - strand, within ABZR86_RS11775at 2641.694 kb on - strand, within ABZR86_RS11775at 2641.694 kb on - strand, within ABZR86_RS11775at 2641.694 kb on - strand, within ABZR86_RS11775at 2641.901 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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2,639,594 - ABZR86_RS11765 0.57 +0.9
2,639,594 - ABZR86_RS11765 0.57 +0.4
2,639,733 + ABZR86_RS11765 0.65 +0.4
2,639,734 - ABZR86_RS11765 0.65 +0.4
2,639,986 + ABZR86_RS11765 0.78 -1.1
2,640,074 + ABZR86_RS11765 0.83 -0.9
2,640,075 - ABZR86_RS11765 0.83 -0.1
2,640,137 - ABZR86_RS11765 0.86 -0.5
2,640,328 + -0.2
2,640,328 + +0.8
2,640,723 + ABZR86_RS11770 0.33 -0.1
2,640,724 - ABZR86_RS11770 0.33 -0.3
2,640,724 - ABZR86_RS11770 0.33 +0.7
2,640,945 + ABZR86_RS11770 0.55 -0.4
2,640,945 + ABZR86_RS11770 0.55 -1.5
2,640,946 - ABZR86_RS11770 0.55 +0.6
2,640,946 - ABZR86_RS11770 0.55 -0.6
2,641,166 + ABZR86_RS11770 0.78 -1.5
2,641,167 - ABZR86_RS11770 0.78 +0.1
2,641,627 + ABZR86_RS11775 0.47 -0.4
2,641,693 + ABZR86_RS11775 0.59 +0.3
2,641,693 + ABZR86_RS11775 0.59 -0.0
2,641,693 + ABZR86_RS11775 0.59 -0.2
2,641,693 + ABZR86_RS11775 0.59 +0.2
2,641,693 + ABZR86_RS11775 0.59 -0.7
2,641,693 + ABZR86_RS11775 0.59 +0.4
2,641,693 + ABZR86_RS11775 0.59 +0.3
2,641,693 + ABZR86_RS11775 0.59 +0.6
2,641,693 + ABZR86_RS11775 0.59 +1.1
2,641,693 + ABZR86_RS11775 0.59 +1.3
2,641,694 - ABZR86_RS11775 0.59 +0.3
2,641,694 - ABZR86_RS11775 0.59 +0.2
2,641,694 - ABZR86_RS11775 0.59 -0.3
2,641,694 - ABZR86_RS11775 0.59 +0.2
2,641,694 - ABZR86_RS11775 0.59 -1.0
2,641,694 - ABZR86_RS11775 0.59 -0.3
2,641,694 - ABZR86_RS11775 0.59 -1.1
2,641,694 - ABZR86_RS11775 0.59 -0.4
2,641,901 + -0.0

Or see this region's nucleotide sequence