Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08100

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08090 and ABZR86_RS08095 are separated by 72 nucleotidesABZR86_RS08095 and ABZR86_RS08100 are separated by 9 nucleotidesABZR86_RS08100 and ABZR86_RS08105 are separated by 83 nucleotides ABZR86_RS08090: ABZR86_RS08090 - phosphate/phosphite/phosphonate ABC transporter substrate-binding protein, at 1,806,614 to 1,807,639 _RS08090 ABZR86_RS08095: ABZR86_RS08095 - DUF3025 domain-containing protein, at 1,807,712 to 1,808,512 _RS08095 ABZR86_RS08100: ABZR86_RS08100 - 30S ribosomal protein S12 methylthiotransferase RimO, at 1,808,522 to 1,809,856 _RS08100 ABZR86_RS08105: ABZR86_RS08105 - phytanoyl-CoA dioxygenase family protein, at 1,809,940 to 1,810,827 _RS08105 Position (kb) 1808 1809 1810Strain fitness (log2 ratio) -1 0 1 2at 1807.640 kb on - strandat 1807.640 kb on - strandat 1807.669 kb on + strandat 1807.669 kb on + strandat 1807.669 kb on + strandat 1807.669 kb on + strandat 1807.669 kb on + strandat 1807.670 kb on - strandat 1807.758 kb on + strandat 1807.758 kb on + strandat 1807.759 kb on - strandat 1807.759 kb on - strandat 1807.759 kb on - strandat 1808.223 kb on + strand, within ABZR86_RS08095at 1808.310 kb on + strand, within ABZR86_RS08095at 1808.310 kb on + strand, within ABZR86_RS08095at 1808.396 kb on + strand, within ABZR86_RS08095at 1808.433 kb on + strandat 1808.505 kb on + strandat 1808.505 kb on + strandat 1808.506 kb on - strandat 1809.125 kb on + strand, within ABZR86_RS08100at 1809.125 kb on + strand, within ABZR86_RS08100at 1809.125 kb on + strand, within ABZR86_RS08100at 1809.125 kb on + strand, within ABZR86_RS08100at 1809.126 kb on - strand, within ABZR86_RS08100at 1809.126 kb on - strand, within ABZR86_RS08100at 1809.126 kb on - strand, within ABZR86_RS08100at 1809.145 kb on - strand, within ABZR86_RS08100at 1809.151 kb on - strand, within ABZR86_RS08100at 1809.156 kb on + strand, within ABZR86_RS08100at 1809.156 kb on + strand, within ABZR86_RS08100at 1809.156 kb on + strand, within ABZR86_RS08100at 1809.156 kb on + strand, within ABZR86_RS08100at 1809.223 kb on - strand, within ABZR86_RS08100at 1809.252 kb on + strand, within ABZR86_RS08100at 1809.252 kb on + strand, within ABZR86_RS08100at 1809.271 kb on - strand, within ABZR86_RS08100at 1809.438 kb on + strand, within ABZR86_RS08100at 1809.438 kb on + strand, within ABZR86_RS08100at 1809.438 kb on + strand, within ABZR86_RS08100at 1809.438 kb on + strand, within ABZR86_RS08100at 1809.439 kb on - strand, within ABZR86_RS08100at 1809.439 kb on - strand, within ABZR86_RS08100at 1809.439 kb on - strand, within ABZR86_RS08100at 1809.439 kb on - strand, within ABZR86_RS08100at 1809.482 kb on - strand, within ABZR86_RS08100at 1809.547 kb on - strand, within ABZR86_RS08100at 1809.738 kb on + strandat 1809.738 kb on + strandat 1809.738 kb on + strandat 1809.739 kb on - strandat 1809.756 kb on + strandat 1809.757 kb on - strandat 1809.894 kb on + strandat 1809.895 kb on - strandat 1809.895 kb on - strandat 1809.897 kb on - strandat 1809.962 kb on + strandat 1809.962 kb on + strandat 1809.962 kb on + strandat 1809.963 kb on - strandat 1809.963 kb on - strandat 1809.963 kb on - strandat 1809.963 kb on - strandat 1809.969 kb on - strandat 1809.969 kb on - strandat 1809.969 kb on - strandat 1809.992 kb on + strandat 1809.992 kb on + strandat 1809.992 kb on + strandat 1809.992 kb on + strandat 1809.992 kb on + strandat 1809.992 kb on + strandat 1809.992 kb on + strandat 1809.992 kb on + strandat 1809.992 kb on + strandat 1809.992 kb on + strandat 1809.992 kb on + strandat 1809.992 kb on + strandat 1809.992 kb on + strandat 1809.992 kb on + strandat 1809.993 kb on + strandat 1809.993 kb on - strandat 1809.993 kb on - strandat 1809.993 kb on - strandat 1809.993 kb on - strandat 1809.993 kb on - strandat 1809.993 kb on - strandat 1809.993 kb on - strandat 1809.993 kb on - strandat 1809.993 kb on - strandat 1809.993 kb on - strandat 1809.993 kb on - strandat 1809.993 kb on - strandat 1810.226 kb on + strand, within ABZR86_RS08105at 1810.227 kb on - strand, within ABZR86_RS08105at 1810.517 kb on + strand, within ABZR86_RS08105at 1810.518 kb on - strand, within ABZR86_RS08105at 1810.577 kb on + strand, within ABZR86_RS08105at 1810.577 kb on + strand, within ABZR86_RS08105at 1810.578 kb on - strand, within ABZR86_RS08105at 1810.578 kb on - strand, within ABZR86_RS08105at 1810.578 kb on - strand, within ABZR86_RS08105at 1810.578 kb on - strand, within ABZR86_RS08105at 1810.776 kb on - strandat 1810.776 kb on - strandat 1810.776 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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1,807,640 - +0.4
1,807,640 - +0.2
1,807,669 + +0.3
1,807,669 + -0.7
1,807,669 + +0.8
1,807,669 + +0.3
1,807,669 + -0.2
1,807,670 - +0.0
1,807,758 + +0.6
1,807,758 + +0.3
1,807,759 - +1.0
1,807,759 - +0.5
1,807,759 - +0.4
1,808,223 + ABZR86_RS08095 0.64 -0.4
1,808,310 + ABZR86_RS08095 0.75 -0.6
1,808,310 + ABZR86_RS08095 0.75 -0.1
1,808,396 + ABZR86_RS08095 0.85 +0.9
1,808,433 + -0.1
1,808,505 + +0.1
1,808,505 + -0.6
1,808,506 - -0.4
1,809,125 + ABZR86_RS08100 0.45 -0.7
1,809,125 + ABZR86_RS08100 0.45 -0.2
1,809,125 + ABZR86_RS08100 0.45 -0.2
1,809,125 + ABZR86_RS08100 0.45 -0.0
1,809,126 - ABZR86_RS08100 0.45 +0.3
1,809,126 - ABZR86_RS08100 0.45 +0.5
1,809,126 - ABZR86_RS08100 0.45 +0.6
1,809,145 - ABZR86_RS08100 0.47 -0.8
1,809,151 - ABZR86_RS08100 0.47 -0.4
1,809,156 + ABZR86_RS08100 0.47 -0.4
1,809,156 + ABZR86_RS08100 0.47 -0.1
1,809,156 + ABZR86_RS08100 0.47 +0.3
1,809,156 + ABZR86_RS08100 0.47 -0.4
1,809,223 - ABZR86_RS08100 0.53 -0.1
1,809,252 + ABZR86_RS08100 0.55 +0.1
1,809,252 + ABZR86_RS08100 0.55 +1.1
1,809,271 - ABZR86_RS08100 0.56 -1.4
1,809,438 + ABZR86_RS08100 0.69 -0.1
1,809,438 + ABZR86_RS08100 0.69 -0.5
1,809,438 + ABZR86_RS08100 0.69 +1.0
1,809,438 + ABZR86_RS08100 0.69 +0.5
1,809,439 - ABZR86_RS08100 0.69 -0.1
1,809,439 - ABZR86_RS08100 0.69 +0.0
1,809,439 - ABZR86_RS08100 0.69 -0.6
1,809,439 - ABZR86_RS08100 0.69 +0.0
1,809,482 - ABZR86_RS08100 0.72 -0.4
1,809,547 - ABZR86_RS08100 0.77 -0.5
1,809,738 + +0.2
1,809,738 + -1.0
1,809,738 + +0.1
1,809,739 - +0.4
1,809,756 + -0.5
1,809,757 - +0.1
1,809,894 + +0.4
1,809,895 - -0.1
1,809,895 - +0.5
1,809,897 - +0.5
1,809,962 + +0.1
1,809,962 + -0.1
1,809,962 + -0.9
1,809,963 - -0.1
1,809,963 - +0.5
1,809,963 - +0.1
1,809,963 - +0.2
1,809,969 - -0.8
1,809,969 - -1.2
1,809,969 - +1.2
1,809,992 + +1.0
1,809,992 + -0.0
1,809,992 + -0.2
1,809,992 + -0.6
1,809,992 + -0.5
1,809,992 + +0.4
1,809,992 + -0.8
1,809,992 + -0.8
1,809,992 + +0.2
1,809,992 + +0.1
1,809,992 + -0.2
1,809,992 + +0.4
1,809,992 + -0.5
1,809,992 + -0.1
1,809,993 + -0.2
1,809,993 - +0.4
1,809,993 - +0.4
1,809,993 - +0.0
1,809,993 - +0.3
1,809,993 - -0.4
1,809,993 - -1.1
1,809,993 - -0.1
1,809,993 - -0.2
1,809,993 - +0.2
1,809,993 - +1.8
1,809,993 - +0.2
1,809,993 - +0.1
1,810,226 + ABZR86_RS08105 0.32 -1.3
1,810,227 - ABZR86_RS08105 0.32 -0.1
1,810,517 + ABZR86_RS08105 0.65 -0.0
1,810,518 - ABZR86_RS08105 0.65 -0.5
1,810,577 + ABZR86_RS08105 0.72 +0.6
1,810,577 + ABZR86_RS08105 0.72 +0.7
1,810,578 - ABZR86_RS08105 0.72 -1.1
1,810,578 - ABZR86_RS08105 0.72 +0.4
1,810,578 - ABZR86_RS08105 0.72 +0.9
1,810,578 - ABZR86_RS08105 0.72 +0.5
1,810,776 - +0.5
1,810,776 - -0.0
1,810,776 - -1.3

Or see this region's nucleotide sequence