Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01630

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01625 and ABZR86_RS01630 are separated by 315 nucleotidesABZR86_RS01630 and ABZR86_RS01635 are separated by 56 nucleotides ABZR86_RS01625: ABZR86_RS01625 - Dyp-type peroxidase, at 348,723 to 349,646 _RS01625 ABZR86_RS01630: ABZR86_RS01630 - histidine-type phosphatase, at 349,962 to 351,284 _RS01630 ABZR86_RS01635: ABZR86_RS01635 - TonB-dependent receptor, at 351,341 to 354,067 _RS01635 Position (kb) 349 350 351 352Strain fitness (log2 ratio) -2 -1 0 1at 349.131 kb on + strand, within ABZR86_RS01625at 349.131 kb on + strand, within ABZR86_RS01625at 349.131 kb on + strand, within ABZR86_RS01625at 349.131 kb on + strand, within ABZR86_RS01625at 349.131 kb on + strand, within ABZR86_RS01625at 349.131 kb on + strand, within ABZR86_RS01625at 349.132 kb on - strand, within ABZR86_RS01625at 349.248 kb on + strand, within ABZR86_RS01625at 349.266 kb on + strand, within ABZR86_RS01625at 349.377 kb on + strand, within ABZR86_RS01625at 349.378 kb on - strand, within ABZR86_RS01625at 349.482 kb on + strand, within ABZR86_RS01625at 349.563 kb on + strandat 349.564 kb on - strandat 349.564 kb on - strandat 349.564 kb on - strandat 349.564 kb on - strandat 349.843 kb on - strandat 349.843 kb on - strandat 349.963 kb on + strandat 349.963 kb on + strandat 349.964 kb on - strandat 349.964 kb on - strandat 350.062 kb on - strandat 350.185 kb on + strand, within ABZR86_RS01630at 350.186 kb on - strand, within ABZR86_RS01630at 350.186 kb on - strand, within ABZR86_RS01630at 350.201 kb on - strand, within ABZR86_RS01630at 350.425 kb on + strand, within ABZR86_RS01630at 350.425 kb on + strand, within ABZR86_RS01630at 350.425 kb on + strand, within ABZR86_RS01630at 350.425 kb on + strand, within ABZR86_RS01630at 350.425 kb on + strand, within ABZR86_RS01630at 350.426 kb on - strand, within ABZR86_RS01630at 351.007 kb on + strand, within ABZR86_RS01630at 351.352 kb on - strandat 351.367 kb on + strandat 351.368 kb on - strandat 351.368 kb on - strandat 351.368 kb on - strandat 351.368 kb on - strandat 351.369 kb on + strandat 351.369 kb on + strandat 351.369 kb on + strandat 351.369 kb on + strandat 351.369 kb on + strandat 351.370 kb on - strandat 351.370 kb on - strandat 351.370 kb on - strandat 351.370 kb on - strandat 351.370 kb on - strandat 351.370 kb on - strandat 351.370 kb on - strandat 351.390 kb on + strandat 351.390 kb on + strandat 351.390 kb on + strandat 351.391 kb on - strandat 351.505 kb on - strandat 351.516 kb on + strandat 351.516 kb on + strandat 351.516 kb on + strandat 351.516 kb on + strandat 351.516 kb on + strandat 351.516 kb on + strandat 351.517 kb on - strandat 351.555 kb on + strandat 351.556 kb on - strandat 351.558 kb on + strandat 351.558 kb on + strandat 351.559 kb on - strandat 351.559 kb on - strandat 351.559 kb on - strandat 351.603 kb on + strandat 351.603 kb on + strandat 351.604 kb on - strandat 351.604 kb on - strandat 351.609 kb on + strandat 351.609 kb on + strandat 351.610 kb on - strandat 351.610 kb on - strandat 351.610 kb on - strandat 351.610 kb on - strandat 351.610 kb on - strandat 351.642 kb on + strand, within ABZR86_RS01635at 351.660 kb on + strand, within ABZR86_RS01635at 351.660 kb on + strand, within ABZR86_RS01635at 351.660 kb on + strand, within ABZR86_RS01635at 351.660 kb on + strand, within ABZR86_RS01635at 351.660 kb on + strand, within ABZR86_RS01635at 351.661 kb on - strand, within ABZR86_RS01635at 351.661 kb on - strand, within ABZR86_RS01635at 351.661 kb on - strand, within ABZR86_RS01635at 351.826 kb on - strand, within ABZR86_RS01635at 351.896 kb on + strand, within ABZR86_RS01635at 351.943 kb on + strand, within ABZR86_RS01635at 351.943 kb on + strand, within ABZR86_RS01635at 351.945 kb on + strand, within ABZR86_RS01635at 351.945 kb on + strand, within ABZR86_RS01635at 351.945 kb on + strand, within ABZR86_RS01635at 351.946 kb on - strand, within ABZR86_RS01635at 351.946 kb on - strand, within ABZR86_RS01635at 351.946 kb on - strand, within ABZR86_RS01635at 351.969 kb on + strand, within ABZR86_RS01635at 351.970 kb on - strand, within ABZR86_RS01635at 351.973 kb on - strand, within ABZR86_RS01635at 351.989 kb on + strand, within ABZR86_RS01635at 351.990 kb on - strand, within ABZR86_RS01635at 352.008 kb on + strand, within ABZR86_RS01635at 352.009 kb on - strand, within ABZR86_RS01635at 352.009 kb on - strand, within ABZR86_RS01635at 352.110 kb on + strand, within ABZR86_RS01635at 352.110 kb on + strand, within ABZR86_RS01635at 352.111 kb on - strand, within ABZR86_RS01635

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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349,131 + ABZR86_RS01625 0.44 -0.2
349,131 + ABZR86_RS01625 0.44 +0.2
349,131 + ABZR86_RS01625 0.44 +0.6
349,131 + ABZR86_RS01625 0.44 +0.6
349,131 + ABZR86_RS01625 0.44 -0.4
349,131 + ABZR86_RS01625 0.44 -0.5
349,132 - ABZR86_RS01625 0.44 -0.9
349,248 + ABZR86_RS01625 0.57 -1.0
349,266 + ABZR86_RS01625 0.59 -0.1
349,377 + ABZR86_RS01625 0.71 +0.2
349,378 - ABZR86_RS01625 0.71 -0.1
349,482 + ABZR86_RS01625 0.82 +0.8
349,563 + -1.1
349,564 - -0.2
349,564 - -0.3
349,564 - -0.3
349,564 - -0.4
349,843 - +0.5
349,843 - -0.3
349,963 + -0.4
349,963 + -0.2
349,964 - -0.2
349,964 - +0.3
350,062 - -0.5
350,185 + ABZR86_RS01630 0.17 -1.0
350,186 - ABZR86_RS01630 0.17 -0.3
350,186 - ABZR86_RS01630 0.17 -0.2
350,201 - ABZR86_RS01630 0.18 +0.0
350,425 + ABZR86_RS01630 0.35 +0.5
350,425 + ABZR86_RS01630 0.35 +0.4
350,425 + ABZR86_RS01630 0.35 -0.3
350,425 + ABZR86_RS01630 0.35 +0.3
350,425 + ABZR86_RS01630 0.35 +0.2
350,426 - ABZR86_RS01630 0.35 -1.6
351,007 + ABZR86_RS01630 0.79 +0.1
351,352 - -0.2
351,367 + -0.2
351,368 - +0.4
351,368 - -0.2
351,368 - +0.0
351,368 - -0.0
351,369 + +0.5
351,369 + -0.7
351,369 + -0.9
351,369 + -0.6
351,369 + +1.3
351,370 - -0.1
351,370 - -0.9
351,370 - -0.2
351,370 - -0.0
351,370 - +0.0
351,370 - +0.2
351,370 - +0.1
351,390 + +0.5
351,390 + +0.2
351,390 + -0.3
351,391 - -0.1
351,505 - -2.3
351,516 + +0.3
351,516 + +0.8
351,516 + +0.3
351,516 + +0.2
351,516 + -2.4
351,516 + +0.7
351,517 - +0.2
351,555 + -0.1
351,556 - +0.3
351,558 + +0.3
351,558 + +1.0
351,559 - +0.8
351,559 - -0.5
351,559 - +0.5
351,603 + -1.6
351,603 + +0.5
351,604 - -0.4
351,604 - -0.0
351,609 + -0.5
351,609 + -0.3
351,610 - +0.5
351,610 - +0.1
351,610 - +0.3
351,610 - -0.3
351,610 - +0.3
351,642 + ABZR86_RS01635 0.11 -0.7
351,660 + ABZR86_RS01635 0.12 -0.4
351,660 + ABZR86_RS01635 0.12 +0.9
351,660 + ABZR86_RS01635 0.12 -1.4
351,660 + ABZR86_RS01635 0.12 +0.2
351,660 + ABZR86_RS01635 0.12 -0.2
351,661 - ABZR86_RS01635 0.12 -0.4
351,661 - ABZR86_RS01635 0.12 +0.1
351,661 - ABZR86_RS01635 0.12 +0.4
351,826 - ABZR86_RS01635 0.18 +0.3
351,896 + ABZR86_RS01635 0.20 -0.6
351,943 + ABZR86_RS01635 0.22 +1.0
351,943 + ABZR86_RS01635 0.22 +0.3
351,945 + ABZR86_RS01635 0.22 +0.2
351,945 + ABZR86_RS01635 0.22 +0.4
351,945 + ABZR86_RS01635 0.22 -0.1
351,946 - ABZR86_RS01635 0.22 +0.9
351,946 - ABZR86_RS01635 0.22 -0.3
351,946 - ABZR86_RS01635 0.22 +1.1
351,969 + ABZR86_RS01635 0.23 -0.4
351,970 - ABZR86_RS01635 0.23 -0.3
351,973 - ABZR86_RS01635 0.23 -2.4
351,989 + ABZR86_RS01635 0.24 +0.3
351,990 - ABZR86_RS01635 0.24 +0.8
352,008 + ABZR86_RS01635 0.24 -1.0
352,009 - ABZR86_RS01635 0.24 -0.0
352,009 - ABZR86_RS01635 0.24 +0.6
352,110 + ABZR86_RS01635 0.28 +0.2
352,110 + ABZR86_RS01635 0.28 -0.3
352,111 - ABZR86_RS01635 0.28 -0.5

Or see this region's nucleotide sequence