Experiment: perchlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01205 and ABZR86_RS01210 overlap by 4 nucleotides ABZR86_RS01210 and ABZR86_RS01215 are separated by 2 nucleotides ABZR86_RS01215 and ABZR86_RS01220 overlap by 4 nucleotides ABZR86_RS01220 and ABZR86_RS01225 are separated by 14 nucleotides
ABZR86_RS01205: ABZR86_RS01205 - D-galactanolactonase <small>(from data)</small>, at 250,241 to 251,143
_RS01205
ABZR86_RS01210: ABZR86_RS01210 - SDR family oxidoreductase, at 251,140 to 251,904
_RS01210
ABZR86_RS01215: ABZR86_RS01215 - galactonate dehydratase, at 251,907 to 253,055
_RS01215
ABZR86_RS01220: ABZR86_RS01220 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 253,052 to 253,693
_RS01220
ABZR86_RS01225: ABZR86_RS01225 - 2-dehydro-3-deoxygalactonokinase dgoK (EC 2.7.1.58) <small>(from data)</small>, at 253,708 to 254,628
_RS01225
Position (kb) 251
252
253
254 Strain fitness (log2 ratio) -1
0
1 at 251.064 kb on + strand at 251.065 kb on - strand at 251.065 kb on - strand at 251.110 kb on + strand at 251.111 kb on - strand at 251.144 kb on - strand at 251.144 kb on - strand at 251.423 kb on + strand, within ABZR86_RS01210 at 251.424 kb on - strand, within ABZR86_RS01210 at 251.424 kb on - strand, within ABZR86_RS01210 at 251.424 kb on - strand, within ABZR86_RS01210 at 251.583 kb on + strand, within ABZR86_RS01210 at 251.596 kb on - strand, within ABZR86_RS01210 at 251.889 kb on + strand at 251.890 kb on - strand at 251.990 kb on - strand at 251.990 kb on - strand at 252.041 kb on - strand, within ABZR86_RS01215 at 252.041 kb on - strand, within ABZR86_RS01215 at 252.052 kb on + strand, within ABZR86_RS01215 at 252.106 kb on + strand, within ABZR86_RS01215 at 252.107 kb on - strand, within ABZR86_RS01215 at 252.335 kb on - strand, within ABZR86_RS01215 at 252.344 kb on - strand, within ABZR86_RS01215 at 252.448 kb on + strand, within ABZR86_RS01215 at 252.599 kb on - strand, within ABZR86_RS01215 at 252.748 kb on + strand, within ABZR86_RS01215 at 252.749 kb on - strand, within ABZR86_RS01215 at 252.853 kb on + strand, within ABZR86_RS01215 at 252.879 kb on - strand, within ABZR86_RS01215 at 252.905 kb on - strand, within ABZR86_RS01215 at 252.905 kb on - strand, within ABZR86_RS01215 at 253.083 kb on - strand at 253.152 kb on + strand, within ABZR86_RS01220 at 253.383 kb on + strand, within ABZR86_RS01220 at 253.384 kb on - strand, within ABZR86_RS01220 at 253.384 kb on - strand, within ABZR86_RS01220 at 253.384 kb on - strand, within ABZR86_RS01220 at 253.687 kb on + strand at 253.687 kb on + strand at 253.687 kb on + strand at 253.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 75 mM remove 251,064 + +0.2 251,065 - +0.1 251,065 - -0.9 251,110 + +0.3 251,111 - -0.6 251,144 - +0.3 251,144 - +0.4 251,423 + ABZR86_RS01210 0.37 -0.0 251,424 - ABZR86_RS01210 0.37 -0.6 251,424 - ABZR86_RS01210 0.37 +0.4 251,424 - ABZR86_RS01210 0.37 -0.9 251,583 + ABZR86_RS01210 0.58 -0.1 251,596 - ABZR86_RS01210 0.60 -0.6 251,889 + -0.8 251,890 - +0.6 251,990 - +0.4 251,990 - -0.5 252,041 - ABZR86_RS01215 0.12 -0.2 252,041 - ABZR86_RS01215 0.12 +0.0 252,052 + ABZR86_RS01215 0.13 +0.3 252,106 + ABZR86_RS01215 0.17 +0.4 252,107 - ABZR86_RS01215 0.17 +0.2 252,335 - ABZR86_RS01215 0.37 -0.8 252,344 - ABZR86_RS01215 0.38 -0.7 252,448 + ABZR86_RS01215 0.47 +0.4 252,599 - ABZR86_RS01215 0.60 -0.6 252,748 + ABZR86_RS01215 0.73 -0.3 252,749 - ABZR86_RS01215 0.73 -0.3 252,853 + ABZR86_RS01215 0.82 +0.0 252,879 - ABZR86_RS01215 0.85 +0.8 252,905 - ABZR86_RS01215 0.87 +0.3 252,905 - ABZR86_RS01215 0.87 +0.0 253,083 - +0.0 253,152 + ABZR86_RS01220 0.16 +0.1 253,383 + ABZR86_RS01220 0.52 -0.5 253,384 - ABZR86_RS01220 0.52 -0.2 253,384 - ABZR86_RS01220 0.52 -0.7 253,384 - ABZR86_RS01220 0.52 +0.5 253,687 + -0.3 253,687 + +0.0 253,687 + +0.0 253,688 - +0.3
Or see this region's nucleotide sequence