Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06795

Experiment: formate McAA B12 dropout

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate McAA B12 dropout
1,255,656	+		MMJJ_RS06790	0.15	-0.1
1,255,675	+		MMJJ_RS06790	0.16	-0.2
1,255,675	+		MMJJ_RS06790	0.16	+0.3
1,255,677	-		MMJJ_RS06790	0.17	+0.5
1,255,678	+		MMJJ_RS06790	0.17	+1.2
1,255,719	-		MMJJ_RS06790	0.21	+0.2
1,255,720	+		MMJJ_RS06790	0.21	+0.7
1,255,796	+		MMJJ_RS06790	0.28	-0.4
1,255,898	-		MMJJ_RS06790	0.38	-2.3
1,255,899	+		MMJJ_RS06790	0.38	+0.5
1,255,901	+		MMJJ_RS06790	0.38	+0.5
1,255,995	-		MMJJ_RS06790	0.47	+0.1
1,255,995	-		MMJJ_RS06790	0.47	+1.0
1,255,995	-		MMJJ_RS06790	0.47	-0.9
1,255,995	-		MMJJ_RS06790	0.47	+0.7
1,255,995	-		MMJJ_RS06790	0.47	-0.1
1,255,995	-		MMJJ_RS06790	0.47	-0.5
1,255,995	-		MMJJ_RS06790	0.47	+0.3
1,255,995	-		MMJJ_RS06790	0.47	+0.2
1,255,996	+		MMJJ_RS06790	0.47	+0.8
1,255,996	+		MMJJ_RS06790	0.47	+1.0
1,255,996	+		MMJJ_RS06790	0.47	+0.6
1,255,996	+		MMJJ_RS06790	0.47	-0.3
1,255,996	+		MMJJ_RS06790	0.47	+0.3
1,255,996	+		MMJJ_RS06790	0.47	+0.2
1,255,996	+		MMJJ_RS06790	0.47	+0.3
1,255,996	+		MMJJ_RS06790	0.47	+1.3
1,256,053	-		MMJJ_RS06790	0.52	+0.4
1,256,053	-		MMJJ_RS06790	0.52	+0.4
1,256,053	-		MMJJ_RS06790	0.52	+0.3
1,256,053	-		MMJJ_RS06790	0.52	+1.8
1,256,053	-		MMJJ_RS06790	0.52	+1.3
1,256,053	-		MMJJ_RS06790	0.52	+0.7
1,256,053	-		MMJJ_RS06790	0.52	-0.3
1,256,053	-		MMJJ_RS06790	0.52	+0.2
1,256,054	+		MMJJ_RS06790	0.53	-0.5
1,256,054	+		MMJJ_RS06790	0.53	-0.5
1,256,054	+		MMJJ_RS06790	0.53	-1.0
1,256,054	+		MMJJ_RS06790	0.53	-0.1
1,256,054	+		MMJJ_RS06790	0.53	+1.1
1,256,087	-		MMJJ_RS06790	0.56	+1.2
1,256,095	-		MMJJ_RS06790	0.56	+0.8
1,256,125	-		MMJJ_RS06790	0.59	+0.7
1,256,126	+		MMJJ_RS06790	0.59	-0.4
1,256,140	-		MMJJ_RS06790	0.61	+0.9
1,256,140	-		MMJJ_RS06790	0.61	-0.5
1,256,141	+		MMJJ_RS06790	0.61	+1.7
1,256,143	-				+1.4
1,256,154	+		MMJJ_RS06790	0.62	+0.6
1,256,154	+		MMJJ_RS06790	0.62	+0.4
1,256,188	+		MMJJ_RS06790	0.65	-0.1
1,256,203	-		MMJJ_RS06790	0.67	+0.9
1,256,228	-		MMJJ_RS06790	0.69	+0.9
1,256,229	+		MMJJ_RS06790	0.69	+1.0
1,256,231	-		MMJJ_RS06790	0.69	+0.6
1,256,283	+		MMJJ_RS06790	0.74	-1.2
1,256,283	+		MMJJ_RS06790	0.74	+0.1
1,256,283	+		MMJJ_RS06790	0.74	+0.4
1,256,283	+		MMJJ_RS06790	0.74	-0.4
1,256,287	+		MMJJ_RS06790	0.75	+0.7
1,256,287	+		MMJJ_RS06790	0.75	+0.5
1,256,327	+		MMJJ_RS06790	0.79	+0.1
1,256,333	-		MMJJ_RS06790	0.79	-0.1
1,256,333	-		MMJJ_RS06790	0.79	-1.4
1,256,333	-		MMJJ_RS06790	0.79	+1.0
1,256,334	+		MMJJ_RS06790	0.79	-0.5
1,256,334	+		MMJJ_RS06790	0.79	+0.5
1,256,334	+		MMJJ_RS06790	0.79	-0.8
1,256,334	+		MMJJ_RS06790	0.79	-0.2
1,256,334	+		MMJJ_RS06790	0.79	+0.8
1,256,334	+		MMJJ_RS06790	0.79	+0.1
1,256,334	+		MMJJ_RS06790	0.79	-0.0
1,256,335	-		MMJJ_RS06790	0.79	+0.3
1,256,335	-		MMJJ_RS06790	0.79	-0.8
1,256,336	+		MMJJ_RS06790	0.79	+0.1
1,256,370	-		MMJJ_RS06790	0.83	+0.0
1,256,371	+		MMJJ_RS06790	0.83	-0.3
1,256,371	+		MMJJ_RS06790	0.83	-0.5
1,256,411	-		MMJJ_RS06790	0.87	+0.1
1,256,412	+		MMJJ_RS06790	0.87	+0.3
1,256,412	+		MMJJ_RS06790	0.87	-0.1
1,256,508	+				+0.1
1,256,740	+				+1.4
1,256,799	-				-1.1
1,256,799	-				+0.7
1,256,800	+				+0.7
1,256,800	+				+1.3
1,256,804	-				+0.9
1,256,810	+				+1.1
1,256,812	-				+0.5
1,256,812	-				-0.1
1,256,813	+				+0.5
1,256,813	+				+1.3
1,256,813	+				-0.2
1,256,816	-				+0.4
1,256,816	-				+0.2
1,256,817	+				+0.3
1,256,817	+				+1.0
1,256,817	+				-0.6
1,256,817	+				-0.3
1,256,817	+				-0.2
1,256,858	+				+0.8
1,256,867	-				-0.5
1,257,003	+		MMJJ_RS06800	0.34	+0.7
1,257,018	-		MMJJ_RS06800	0.37	-0.9
1,257,019	+		MMJJ_RS06800	0.37	+1.0
1,257,024	-		MMJJ_RS06800	0.39	-0.2
1,257,024	-		MMJJ_RS06800	0.39	+1.0
1,257,025	+		MMJJ_RS06800	0.39	+0.7
1,257,025	+		MMJJ_RS06800	0.39	+0.2
1,257,025	+		MMJJ_RS06800	0.39	+0.6
1,257,033	-		MMJJ_RS06800	0.41	+0.4
1,257,033	-		MMJJ_RS06800	0.41	+0.3
1,257,034	+		MMJJ_RS06800	0.41	+1.4
1,257,034	+		MMJJ_RS06800	0.41	+0.5
1,257,049	+		MMJJ_RS06800	0.44	-0.1
1,257,049	+		MMJJ_RS06800	0.44	+0.6
1,257,200	-		MMJJ_RS06800	0.79	+1.7
1,257,201	+		MMJJ_RS06800	0.79	+1.6
1,257,201	+		MMJJ_RS06800	0.79	+1.2
1,257,201	+		MMJJ_RS06800	0.79	-0.2
1,257,303	-				+0.5
1,257,304	+				+0.4
1,257,304	+				+1.8
1,257,306	-				+0.5
1,257,306	-				+1.2
1,257,307	+				+0.6
1,257,307	+				+0.9
1,257,327	+				-0.1
1,257,336	-				+1.2
1,257,337	+				+0.1
1,257,337	+				+0.4
1,257,349	-				+0.6
1,257,375	-				+0.8
1,257,376	+				+0.3
1,257,376	+				+0.1
1,257,383	-				-0.4
1,257,384	+				+0.7
1,257,390	-				+1.3
1,257,420	-				+0.5
1,257,420	-				-1.2
1,257,420	-				-1.4
1,257,421	+				-0.8
1,257,421	+				-0.3
1,257,421	+				-1.5
1,257,421	+				-0.9
1,257,422	-				-1.4
1,257,422	-				-0.7
1,257,422	-				-1.6
1,257,422	-				-0.9
1,257,422	-				-0.9
1,257,422	-				-1.1
1,257,422	-				-1.9
1,257,422	-				-2.8
1,257,422	-				-2.0
1,257,422	-				-1.0
1,257,422	-				-1.5
1,257,423	+				-1.2
1,257,423	+				-1.3
1,257,423	+				-0.6
1,257,423	+				-2.0
1,257,423	+				-1.2
1,257,423	+				-0.9
1,257,423	+				-0.9
1,257,425	+				-2.4
1,257,425	+				-1.8
1,257,425	+				-3.4
1,257,425	+				-0.4
1,257,425	+				-2.5
1,257,425	+				-1.4
1,257,427	+				-2.0
1,257,427	+				+1.2
1,257,430	-				-2.6
1,257,483	+				-3.8
1,257,555	-		MMJJ_RS06805	0.23	-1.6
1,257,556	+		MMJJ_RS06805	0.23	-2.3
1,257,556	+		MMJJ_RS06805	0.23	-1.7
1,257,615	-		MMJJ_RS06805	0.43	-2.0
1,257,724	+		MMJJ_RS06805	0.79	-0.8