Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03796 and CCNA_03797 are separated by 178 nucleotides CCNA_03797 and CCNA_03798 overlap by 4 nucleotides CCNA_03798 and CCNA_03799 overlap by 4 nucleotides CCNA_03799 and CCNA_03800 overlap by 88 nucleotides
CCNA_03796: CCNA_03796 - tellurium resistance protein terC, at 3,959,547 to 3,960,557
_03796
CCNA_03797: CCNA_03797 - glutathione-dependent formaldehyde-activating enzyme, at 3,960,736 to 3,961,167
_03797
CCNA_03798: CCNA_03798 - tRNA 2-methylthioadenosine synthase-like protein, at 3,961,164 to 3,962,495
_03798
CCNA_03799: CCNA_03799 - short chain dehydrogenase, at 3,962,492 to 3,963,415
_03799
CCNA_03800: CCNA_03800 - diaminopimelate epimerase, at 3,963,328 to 3,964,194
_03800
Position (kb)
3961
3962
3963 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3960.182 kb on + strand, within CCNA_03796 at 3960.233 kb on - strand, within CCNA_03796 at 3960.237 kb on + strand, within CCNA_03796 at 3960.266 kb on + strand, within CCNA_03796 at 3960.266 kb on + strand, within CCNA_03796 at 3960.266 kb on + strand, within CCNA_03796 at 3960.266 kb on + strand, within CCNA_03796 at 3960.268 kb on + strand, within CCNA_03796 at 3960.283 kb on - strand, within CCNA_03796 at 3960.283 kb on - strand, within CCNA_03796 at 3960.315 kb on + strand, within CCNA_03796 at 3960.320 kb on + strand, within CCNA_03796 at 3960.320 kb on + strand, within CCNA_03796 at 3960.320 kb on + strand, within CCNA_03796 at 3960.328 kb on - strand, within CCNA_03796 at 3960.344 kb on + strand, within CCNA_03796 at 3960.366 kb on - strand, within CCNA_03796 at 3960.368 kb on + strand, within CCNA_03796 at 3960.369 kb on + strand, within CCNA_03796 at 3960.420 kb on + strand, within CCNA_03796 at 3960.428 kb on - strand, within CCNA_03796 at 3960.428 kb on - strand, within CCNA_03796 at 3960.445 kb on - strand, within CCNA_03796 at 3960.445 kb on - strand, within CCNA_03796 at 3960.448 kb on + strand, within CCNA_03796 at 3960.456 kb on - strand, within CCNA_03796 at 3960.466 kb on + strand at 3960.486 kb on + strand at 3960.486 kb on + strand at 3960.494 kb on - strand at 3960.508 kb on - strand at 3960.607 kb on + strand at 3960.642 kb on + strand at 3960.642 kb on + strand at 3960.642 kb on + strand at 3960.642 kb on + strand at 3960.642 kb on + strand at 3960.642 kb on + strand at 3960.642 kb on + strand at 3960.642 kb on + strand at 3960.642 kb on + strand at 3960.642 kb on + strand at 3960.650 kb on - strand at 3960.650 kb on - strand at 3960.650 kb on - strand at 3960.650 kb on - strand at 3960.650 kb on - strand at 3960.654 kb on + strand at 3960.662 kb on - strand at 3960.673 kb on + strand at 3960.674 kb on + strand at 3960.674 kb on + strand at 3960.686 kb on + strand at 3960.695 kb on - strand at 3960.732 kb on + strand at 3960.762 kb on - strand at 3960.846 kb on - strand at 3960.846 kb on - strand, within CCNA_03797 at 3960.860 kb on - strand, within CCNA_03797 at 3960.924 kb on + strand, within CCNA_03797 at 3960.924 kb on + strand, within CCNA_03797 at 3960.931 kb on + strand, within CCNA_03797 at 3960.931 kb on + strand, within CCNA_03797 at 3960.931 kb on + strand, within CCNA_03797 at 3960.939 kb on - strand, within CCNA_03797 at 3960.939 kb on - strand, within CCNA_03797 at 3960.939 kb on - strand, within CCNA_03797 at 3960.939 kb on - strand, within CCNA_03797 at 3960.939 kb on - strand, within CCNA_03797 at 3960.939 kb on - strand, within CCNA_03797 at 3960.965 kb on + strand, within CCNA_03797 at 3960.983 kb on - strand, within CCNA_03797 at 3961.010 kb on + strand, within CCNA_03797 at 3961.010 kb on + strand, within CCNA_03797 at 3961.018 kb on - strand, within CCNA_03797 at 3961.022 kb on + strand, within CCNA_03797 at 3961.023 kb on - strand, within CCNA_03797 at 3961.042 kb on - strand, within CCNA_03797 at 3961.042 kb on - strand, within CCNA_03797 at 3961.069 kb on - strand, within CCNA_03797 at 3961.161 kb on + strand at 3961.161 kb on + strand at 3961.161 kb on + strand at 3961.173 kb on - strand at 3962.470 kb on + strand at 3962.596 kb on - strand, within CCNA_03799 at 3962.602 kb on - strand, within CCNA_03799 at 3962.603 kb on - strand, within CCNA_03799 at 3962.660 kb on - strand, within CCNA_03799 at 3962.690 kb on - strand, within CCNA_03799 at 3962.795 kb on - strand, within CCNA_03799 at 3962.808 kb on + strand, within CCNA_03799 at 3962.820 kb on + strand, within CCNA_03799 at 3962.927 kb on - strand, within CCNA_03799 at 3962.976 kb on + strand, within CCNA_03799 at 3962.984 kb on - strand, within CCNA_03799 at 3962.998 kb on - strand, within CCNA_03799 at 3963.040 kb on - strand, within CCNA_03799 at 3963.118 kb on - strand, within CCNA_03799 at 3963.326 kb on - strand at 3963.363 kb on + strand at 3963.386 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 3,960,182 + CCNA_03796 0.63 +0.7 3,960,233 - CCNA_03796 0.68 -2.0 3,960,237 + CCNA_03796 0.68 -0.6 3,960,266 + CCNA_03796 0.71 -1.0 3,960,266 + CCNA_03796 0.71 +0.5 3,960,266 + CCNA_03796 0.71 -1.1 3,960,266 + CCNA_03796 0.71 -0.6 3,960,268 + CCNA_03796 0.71 +0.1 3,960,283 - CCNA_03796 0.73 +0.3 3,960,283 - CCNA_03796 0.73 -1.6 3,960,315 + CCNA_03796 0.76 -0.3 3,960,320 + CCNA_03796 0.76 -0.3 3,960,320 + CCNA_03796 0.76 -0.9 3,960,320 + CCNA_03796 0.76 -0.3 3,960,328 - CCNA_03796 0.77 -2.0 3,960,344 + CCNA_03796 0.79 -0.3 3,960,366 - CCNA_03796 0.81 +0.1 3,960,368 + CCNA_03796 0.81 +0.4 3,960,369 + CCNA_03796 0.81 +0.6 3,960,420 + CCNA_03796 0.86 +1.5 3,960,428 - CCNA_03796 0.87 -1.1 3,960,428 - CCNA_03796 0.87 -0.8 3,960,445 - CCNA_03796 0.89 -1.1 3,960,445 - CCNA_03796 0.89 -0.4 3,960,448 + CCNA_03796 0.89 +0.9 3,960,456 - CCNA_03796 0.90 +0.8 3,960,466 + +0.7 3,960,486 + +0.7 3,960,486 + +0.6 3,960,494 - -1.4 3,960,508 - -0.4 3,960,607 + -0.1 3,960,642 + -1.6 3,960,642 + +0.7 3,960,642 + -2.5 3,960,642 + -1.5 3,960,642 + +2.4 3,960,642 + +0.8 3,960,642 + +0.3 3,960,642 + -0.4 3,960,642 + -0.5 3,960,642 + -0.9 3,960,650 - -0.6 3,960,650 - -0.1 3,960,650 - +0.4 3,960,650 - +0.4 3,960,650 - +0.1 3,960,654 + -2.3 3,960,662 - -0.1 3,960,673 + -0.8 3,960,674 + -1.7 3,960,674 + +0.4 3,960,686 + -0.6 3,960,695 - +0.2 3,960,732 + -1.6 3,960,762 - +0.4 3,960,846 - +0.8 3,960,846 - CCNA_03797 0.25 -0.1 3,960,860 - CCNA_03797 0.29 -0.1 3,960,924 + CCNA_03797 0.44 -1.8 3,960,924 + CCNA_03797 0.44 +0.3 3,960,931 + CCNA_03797 0.45 +0.4 3,960,931 + CCNA_03797 0.45 -0.1 3,960,931 + CCNA_03797 0.45 -1.4 3,960,939 - CCNA_03797 0.47 -0.9 3,960,939 - CCNA_03797 0.47 -1.0 3,960,939 - CCNA_03797 0.47 -0.9 3,960,939 - CCNA_03797 0.47 +0.2 3,960,939 - CCNA_03797 0.47 +0.0 3,960,939 - CCNA_03797 0.47 -0.1 3,960,965 + CCNA_03797 0.53 +0.3 3,960,983 - CCNA_03797 0.57 -1.8 3,961,010 + CCNA_03797 0.63 -3.3 3,961,010 + CCNA_03797 0.63 -0.6 3,961,018 - CCNA_03797 0.65 -0.5 3,961,022 + CCNA_03797 0.66 -0.8 3,961,023 - CCNA_03797 0.66 -1.5 3,961,042 - CCNA_03797 0.71 -1.0 3,961,042 - CCNA_03797 0.71 +0.2 3,961,069 - CCNA_03797 0.77 -0.3 3,961,161 + -1.3 3,961,161 + -0.5 3,961,161 + -0.8 3,961,173 - +0.8 3,962,470 + -0.0 3,962,596 - CCNA_03799 0.11 +0.5 3,962,602 - CCNA_03799 0.12 -0.3 3,962,603 - CCNA_03799 0.12 +1.5 3,962,660 - CCNA_03799 0.18 -0.0 3,962,690 - CCNA_03799 0.21 +0.8 3,962,795 - CCNA_03799 0.33 +2.4 3,962,808 + CCNA_03799 0.34 -1.6 3,962,820 + CCNA_03799 0.35 -1.9 3,962,927 - CCNA_03799 0.47 +0.8 3,962,976 + CCNA_03799 0.52 -0.2 3,962,984 - CCNA_03799 0.53 +1.2 3,962,998 - CCNA_03799 0.55 +2.2 3,963,040 - CCNA_03799 0.59 +1.9 3,963,118 - CCNA_03799 0.68 +3.1 3,963,326 - +2.1 3,963,363 + -1.2 3,963,386 - -1.1
Or see this region's nucleotide sequence