Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03256 and CCNA_03990 are separated by 113 nucleotides CCNA_03990 and CCNA_03257 are separated by 27 nucleotides CCNA_03257 and CCNA_03258 are separated by 48 nucleotides CCNA_03258 and CCNA_03259 are separated by 11 nucleotides CCNA_03259 and CCNA_03260 are separated by 13 nucleotides
CCNA_03256: CCNA_03256 - chorismate synthase, at 3,427,166 to 3,428,284
_03256
CCNA_03990: CCNA_03990 - hypothetical protein, at 3,428,398 to 3,428,430
_03990
CCNA_03257: CCNA_03257 - chemotaxis receiver domain protein CheYIII, at 3,428,458 to 3,429,000
_03257
CCNA_03258: CCNA_03258 - hypothetical protein, at 3,429,049 to 3,429,288
_03258
CCNA_03259: CCNA_03259 - mannose-6-phosphate isomerase, at 3,429,300 to 3,429,683
_03259
CCNA_03260: CCNA_03260 - queuosine biosynthesis protein QueD, at 3,429,697 to 3,430,062
_03260
Position (kb)
3428
3429
3430 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3427.532 kb on - strand, within CCNA_03256 at 3427.612 kb on + strand, within CCNA_03256 at 3427.660 kb on + strand, within CCNA_03256 at 3428.243 kb on - strand at 3428.349 kb on + strand at 3428.357 kb on - strand at 3428.361 kb on + strand at 3428.404 kb on + strand, within CCNA_03990 at 3428.412 kb on - strand, within CCNA_03990 at 3428.480 kb on - strand at 3428.480 kb on - strand at 3428.520 kb on + strand, within CCNA_03257 at 3428.575 kb on + strand, within CCNA_03257 at 3428.583 kb on - strand, within CCNA_03257 at 3428.616 kb on + strand, within CCNA_03257 at 3428.617 kb on + strand, within CCNA_03257 at 3428.635 kb on - strand, within CCNA_03257 at 3428.675 kb on - strand, within CCNA_03257 at 3428.689 kb on - strand, within CCNA_03257 at 3428.690 kb on + strand, within CCNA_03257 at 3428.700 kb on + strand, within CCNA_03257 at 3428.703 kb on - strand, within CCNA_03257 at 3428.746 kb on - strand, within CCNA_03257 at 3428.807 kb on + strand, within CCNA_03257 at 3428.818 kb on + strand, within CCNA_03257 at 3428.819 kb on + strand, within CCNA_03257 at 3428.857 kb on - strand, within CCNA_03257 at 3428.876 kb on + strand, within CCNA_03257 at 3428.984 kb on - strand at 3428.993 kb on + strand at 3429.002 kb on + strand at 3429.065 kb on - strand at 3429.085 kb on - strand, within CCNA_03258 at 3429.089 kb on - strand, within CCNA_03258 at 3429.098 kb on + strand, within CCNA_03258 at 3429.098 kb on + strand, within CCNA_03258 at 3429.100 kb on - strand, within CCNA_03258 at 3429.106 kb on - strand, within CCNA_03258 at 3429.106 kb on - strand, within CCNA_03258 at 3429.135 kb on + strand, within CCNA_03258 at 3429.143 kb on - strand, within CCNA_03258 at 3429.190 kb on + strand, within CCNA_03258 at 3429.206 kb on + strand, within CCNA_03258 at 3429.288 kb on + strand at 3429.373 kb on + strand, within CCNA_03259 at 3429.374 kb on + strand, within CCNA_03259 at 3429.382 kb on - strand, within CCNA_03259 at 3429.426 kb on + strand, within CCNA_03259 at 3429.435 kb on - strand, within CCNA_03259 at 3429.486 kb on - strand, within CCNA_03259 at 3429.494 kb on + strand, within CCNA_03259 at 3429.564 kb on - strand, within CCNA_03259 at 3429.575 kb on - strand, within CCNA_03259 at 3429.605 kb on + strand, within CCNA_03259 at 3429.605 kb on + strand, within CCNA_03259 at 3429.605 kb on + strand, within CCNA_03259 at 3429.605 kb on + strand, within CCNA_03259 at 3429.605 kb on + strand, within CCNA_03259 at 3429.605 kb on + strand, within CCNA_03259 at 3429.605 kb on + strand, within CCNA_03259 at 3429.605 kb on + strand, within CCNA_03259 at 3429.605 kb on + strand, within CCNA_03259 at 3429.605 kb on + strand, within CCNA_03259 at 3429.605 kb on + strand, within CCNA_03259 at 3429.605 kb on + strand, within CCNA_03259 at 3429.605 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.613 kb on - strand, within CCNA_03259 at 3429.673 kb on + strand at 3429.704 kb on - strand at 3429.704 kb on - strand at 3429.723 kb on - strand at 3429.766 kb on - strand, within CCNA_03260 at 3429.827 kb on - strand, within CCNA_03260 at 3429.827 kb on - strand, within CCNA_03260 at 3429.855 kb on - strand, within CCNA_03260 at 3429.856 kb on - strand, within CCNA_03260 at 3429.951 kb on - strand, within CCNA_03260 at 3429.951 kb on - strand, within CCNA_03260 at 3429.951 kb on - strand, within CCNA_03260 at 3429.951 kb on - strand, within CCNA_03260
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 3,427,532 - CCNA_03256 0.33 +0.1 3,427,612 + CCNA_03256 0.40 +0.6 3,427,660 + CCNA_03256 0.44 -0.7 3,428,243 - +0.9 3,428,349 + +0.3 3,428,357 - -2.3 3,428,361 + +1.8 3,428,404 + CCNA_03990 0.18 +1.7 3,428,412 - CCNA_03990 0.42 -2.8 3,428,480 - -0.0 3,428,480 - -0.0 3,428,520 + CCNA_03257 0.11 +1.7 3,428,575 + CCNA_03257 0.22 +0.5 3,428,583 - CCNA_03257 0.23 -0.9 3,428,616 + CCNA_03257 0.29 +0.7 3,428,617 + CCNA_03257 0.29 +2.5 3,428,635 - CCNA_03257 0.33 +2.0 3,428,675 - CCNA_03257 0.40 -0.8 3,428,689 - CCNA_03257 0.43 +0.1 3,428,690 + CCNA_03257 0.43 +1.5 3,428,700 + CCNA_03257 0.45 +2.0 3,428,703 - CCNA_03257 0.45 -1.8 3,428,746 - CCNA_03257 0.53 -0.5 3,428,807 + CCNA_03257 0.64 +1.2 3,428,818 + CCNA_03257 0.66 +0.7 3,428,819 + CCNA_03257 0.66 +0.9 3,428,857 - CCNA_03257 0.73 +1.5 3,428,876 + CCNA_03257 0.77 +1.3 3,428,984 - +0.3 3,428,993 + +0.1 3,429,002 + +0.3 3,429,065 - -0.2 3,429,085 - CCNA_03258 0.15 +0.2 3,429,089 - CCNA_03258 0.17 +1.2 3,429,098 + CCNA_03258 0.20 +0.5 3,429,098 + CCNA_03258 0.20 -0.4 3,429,100 - CCNA_03258 0.21 -1.0 3,429,106 - CCNA_03258 0.24 -0.6 3,429,106 - CCNA_03258 0.24 -0.8 3,429,135 + CCNA_03258 0.36 +2.8 3,429,143 - CCNA_03258 0.39 +0.9 3,429,190 + CCNA_03258 0.59 +0.4 3,429,206 + CCNA_03258 0.65 +1.4 3,429,288 + +0.9 3,429,373 + CCNA_03259 0.19 -0.2 3,429,374 + CCNA_03259 0.19 -2.0 3,429,382 - CCNA_03259 0.21 -0.2 3,429,426 + CCNA_03259 0.33 -0.7 3,429,435 - CCNA_03259 0.35 +2.3 3,429,486 - CCNA_03259 0.48 +0.7 3,429,494 + CCNA_03259 0.51 -1.1 3,429,564 - CCNA_03259 0.69 -0.9 3,429,575 - CCNA_03259 0.72 +0.1 3,429,605 + CCNA_03259 0.79 -1.7 3,429,605 + CCNA_03259 0.79 +0.2 3,429,605 + CCNA_03259 0.79 -0.5 3,429,605 + CCNA_03259 0.79 +1.4 3,429,605 + CCNA_03259 0.79 -1.2 3,429,605 + CCNA_03259 0.79 +0.3 3,429,605 + CCNA_03259 0.79 -0.5 3,429,605 + CCNA_03259 0.79 -1.8 3,429,605 + CCNA_03259 0.79 +0.2 3,429,605 + CCNA_03259 0.79 -1.1 3,429,605 + CCNA_03259 0.79 +2.9 3,429,605 + CCNA_03259 0.79 +0.9 3,429,605 - CCNA_03259 0.79 +1.3 3,429,613 - CCNA_03259 0.82 +1.8 3,429,613 - CCNA_03259 0.82 +0.4 3,429,613 - CCNA_03259 0.82 +0.7 3,429,613 - CCNA_03259 0.82 +1.4 3,429,613 - CCNA_03259 0.82 +0.6 3,429,613 - CCNA_03259 0.82 +1.2 3,429,613 - CCNA_03259 0.82 +1.1 3,429,613 - CCNA_03259 0.82 +1.7 3,429,613 - CCNA_03259 0.82 +1.8 3,429,613 - +1.9 3,429,613 - CCNA_03259 0.82 +0.7 3,429,613 - CCNA_03259 0.82 +1.8 3,429,613 - CCNA_03259 0.82 +1.2 3,429,613 - CCNA_03259 0.82 +1.6 3,429,613 - CCNA_03259 0.82 +1.6 3,429,613 - CCNA_03259 0.82 +1.5 3,429,613 - CCNA_03259 0.82 +1.7 3,429,613 - CCNA_03259 0.82 +1.2 3,429,613 - CCNA_03259 0.82 +1.1 3,429,613 - CCNA_03259 0.82 +1.5 3,429,613 - CCNA_03259 0.82 +1.3 3,429,613 - CCNA_03259 0.82 +1.0 3,429,613 - CCNA_03259 0.82 -0.2 3,429,613 - CCNA_03259 0.82 +1.7 3,429,613 - CCNA_03259 0.82 +0.2 3,429,613 - CCNA_03259 0.82 +1.0 3,429,613 - CCNA_03259 0.82 +1.8 3,429,673 + -0.0 3,429,704 - +0.8 3,429,704 - +1.3 3,429,723 - +0.3 3,429,766 - CCNA_03260 0.19 -1.3 3,429,827 - CCNA_03260 0.36 -0.1 3,429,827 - CCNA_03260 0.36 -1.9 3,429,855 - CCNA_03260 0.43 -0.7 3,429,856 - CCNA_03260 0.43 +0.2 3,429,951 - CCNA_03260 0.69 +1.1 3,429,951 - CCNA_03260 0.69 +0.4 3,429,951 - CCNA_03260 0.69 -2.1 3,429,951 - CCNA_03260 0.69 -1.0
Or see this region's nucleotide sequence