Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02923 and CCNA_02924 are separated by 371 nucleotides CCNA_02924 and CCNA_02925 are separated by 441 nucleotides
CCNA_02923: CCNA_02923 - TonB-dependent receptor, at 3,082,765 to 3,085,839
_02923
CCNA_02924: CCNA_02924 - hypothetical protein, at 3,086,211 to 3,086,489
_02924
CCNA_02925: CCNA_02925 - carbamoyl-phosphate synthase small chain, at 3,086,931 to 3,088,097
_02925
Position (kb)
3086
3087 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3085.235 kb on - strand, within CCNA_02923 at 3085.241 kb on + strand, within CCNA_02923 at 3085.250 kb on - strand, within CCNA_02923 at 3085.273 kb on - strand, within CCNA_02923 at 3085.275 kb on + strand, within CCNA_02923 at 3085.293 kb on + strand, within CCNA_02923 at 3085.357 kb on + strand, within CCNA_02923 at 3085.364 kb on + strand, within CCNA_02923 at 3085.467 kb on - strand, within CCNA_02923 at 3085.498 kb on + strand, within CCNA_02923 at 3085.612 kb on - strand at 3085.652 kb on + strand at 3085.654 kb on + strand at 3085.740 kb on - strand at 3085.741 kb on + strand at 3085.742 kb on + strand at 3085.742 kb on + strand at 3085.755 kb on + strand at 3085.763 kb on - strand at 3085.765 kb on + strand at 3085.787 kb on - strand at 3085.792 kb on + strand at 3085.807 kb on + strand at 3085.807 kb on + strand at 3085.807 kb on + strand at 3085.807 kb on + strand at 3085.815 kb on - strand at 3085.849 kb on - strand at 3085.860 kb on - strand at 3085.881 kb on + strand at 3085.889 kb on - strand at 3085.917 kb on + strand at 3086.085 kb on + strand at 3086.085 kb on + strand at 3086.093 kb on - strand at 3086.093 kb on - strand at 3086.153 kb on + strand at 3086.209 kb on + strand at 3086.209 kb on + strand at 3086.209 kb on + strand at 3086.209 kb on + strand at 3086.209 kb on + strand at 3086.217 kb on - strand at 3086.217 kb on - strand at 3086.217 kb on - strand at 3086.217 kb on - strand at 3086.217 kb on - strand at 3086.217 kb on - strand at 3086.217 kb on - strand at 3086.233 kb on + strand at 3086.250 kb on - strand, within CCNA_02924 at 3086.267 kb on + strand, within CCNA_02924 at 3086.328 kb on - strand, within CCNA_02924 at 3086.329 kb on + strand, within CCNA_02924 at 3086.359 kb on + strand, within CCNA_02924 at 3086.367 kb on - strand at 3086.392 kb on + strand, within CCNA_02924 at 3086.400 kb on + strand, within CCNA_02924 at 3086.413 kb on + strand, within CCNA_02924 at 3086.413 kb on - strand, within CCNA_02924 at 3086.418 kb on + strand, within CCNA_02924 at 3086.485 kb on + strand at 3086.485 kb on + strand at 3086.493 kb on - strand at 3086.500 kb on + strand at 3086.508 kb on - strand at 3086.513 kb on + strand at 3086.515 kb on + strand at 3086.521 kb on - strand at 3086.614 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.637 kb on + strand at 3086.637 kb on + strand at 3086.637 kb on + strand at 3086.637 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.651 kb on + strand at 3086.651 kb on - strand at 3086.651 kb on - strand at 3086.666 kb on - strand at 3086.667 kb on - strand at 3086.670 kb on + strand at 3086.670 kb on + strand at 3086.678 kb on - strand at 3086.689 kb on - strand at 3086.739 kb on + strand at 3086.747 kb on - strand at 3086.747 kb on - strand at 3086.747 kb on - strand at 3086.750 kb on + strand at 3086.761 kb on + strand at 3086.761 kb on + strand at 3086.761 kb on + strand at 3086.761 kb on + strand at 3086.761 kb on + strand at 3086.761 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 3,085,235 - CCNA_02923 0.80 -0.1 3,085,241 + CCNA_02923 0.81 -1.8 3,085,250 - CCNA_02923 0.81 -1.4 3,085,273 - CCNA_02923 0.82 +0.1 3,085,275 + CCNA_02923 0.82 +0.2 3,085,293 + CCNA_02923 0.82 +0.8 3,085,357 + CCNA_02923 0.84 -0.4 3,085,364 + CCNA_02923 0.85 +1.0 3,085,467 - CCNA_02923 0.88 -2.5 3,085,498 + CCNA_02923 0.89 -1.2 3,085,612 - +2.5 3,085,652 + +0.5 3,085,654 + +0.1 3,085,740 - -1.1 3,085,741 + +1.2 3,085,742 + +1.0 3,085,742 + -1.3 3,085,755 + +0.5 3,085,763 - +1.6 3,085,765 + -1.2 3,085,787 - +0.1 3,085,792 + -0.7 3,085,807 + +1.5 3,085,807 + -0.5 3,085,807 + -0.9 3,085,807 + -1.9 3,085,815 - -0.4 3,085,849 - -1.4 3,085,860 - -1.4 3,085,881 + +3.3 3,085,889 - -0.0 3,085,917 + +1.2 3,086,085 + -0.3 3,086,085 + -0.2 3,086,093 - -1.3 3,086,093 - -0.3 3,086,153 + +0.6 3,086,209 + +1.2 3,086,209 + +0.1 3,086,209 + -1.4 3,086,209 + -0.2 3,086,209 + -1.8 3,086,217 - +0.1 3,086,217 - +0.1 3,086,217 - -0.4 3,086,217 - +2.8 3,086,217 - -0.5 3,086,217 - -0.4 3,086,217 - -0.1 3,086,233 + -1.0 3,086,250 - CCNA_02924 0.14 +0.3 3,086,267 + CCNA_02924 0.20 +1.8 3,086,328 - CCNA_02924 0.42 -1.4 3,086,329 + CCNA_02924 0.42 -0.0 3,086,359 + CCNA_02924 0.53 -1.3 3,086,367 - +1.5 3,086,392 + CCNA_02924 0.65 +0.4 3,086,400 + CCNA_02924 0.68 -1.2 3,086,413 + CCNA_02924 0.72 -0.6 3,086,413 - CCNA_02924 0.72 +0.5 3,086,418 + CCNA_02924 0.74 -1.0 3,086,485 + +0.1 3,086,485 + +0.9 3,086,493 - -0.9 3,086,500 + +1.6 3,086,508 - +0.8 3,086,513 + -2.2 3,086,515 + -0.6 3,086,521 - -0.5 3,086,614 + +0.4 3,086,636 + +1.2 3,086,636 + +0.6 3,086,636 + +1.0 3,086,636 + +0.9 3,086,636 + +1.2 3,086,636 + -0.2 3,086,636 + +1.4 3,086,636 + -0.1 3,086,636 + +0.9 3,086,636 + +0.4 3,086,636 + -0.1 3,086,636 + +1.1 3,086,636 + +0.3 3,086,636 + -0.3 3,086,636 + +0.8 3,086,636 + +1.7 3,086,636 + +2.0 3,086,636 + +1.5 3,086,636 + +0.6 3,086,637 + +1.2 3,086,637 + +1.3 3,086,637 + +0.9 3,086,637 - -0.5 3,086,644 - +0.3 3,086,644 - -0.1 3,086,644 - -0.9 3,086,644 - -1.1 3,086,644 - +0.1 3,086,644 - +0.1 3,086,644 - -0.5 3,086,644 - +0.3 3,086,644 - +2.2 3,086,644 - +0.0 3,086,644 - -0.2 3,086,644 - -0.7 3,086,644 - -0.3 3,086,644 - -1.1 3,086,644 - -1.4 3,086,644 - -0.7 3,086,644 - +1.2 3,086,651 + +2.6 3,086,651 - +1.3 3,086,651 - -0.2 3,086,666 - -0.6 3,086,667 - +0.6 3,086,670 + -0.3 3,086,670 + +1.7 3,086,678 - -0.2 3,086,689 - -0.0 3,086,739 + -1.2 3,086,747 - +1.5 3,086,747 - +1.6 3,086,747 - -1.7 3,086,750 + +3.0 3,086,761 + +3.9 3,086,761 + +3.8 3,086,761 + +3.2 3,086,761 + +3.6 3,086,761 + +3.9 3,086,761 + +3.6
Or see this region's nucleotide sequence