Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02207 and CCNA_02208 are separated by 118 nucleotides CCNA_02208 and CCNA_02209 overlap by 4 nucleotides CCNA_02209 and CCNA_02210 are separated by 101 nucleotides CCNA_02210 and CCNA_02211 are separated by 91 nucleotides
CCNA_02207: CCNA_02207 - hypothetical protein, at 2,354,920 to 2,355,870
_02207
CCNA_02208: CCNA_02208 - thymidylate synthase, at 2,355,989 to 2,356,828
_02208
CCNA_02209: CCNA_02209 - quinone oxidoreductase, at 2,356,825 to 2,357,847
_02209
CCNA_02210: CCNA_02210 - dihydrofolate reductase, at 2,357,949 to 2,358,464
_02210
CCNA_02211: CCNA_02211 - zinc ribbon domain protein, at 2,358,556 to 2,359,698
_02211
Position (kb)
2356
2357
2358 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2355.838 kb on + strand at 2355.838 kb on + strand at 2355.838 kb on + strand at 2355.838 kb on + strand at 2355.840 kb on + strand at 2355.840 kb on + strand at 2355.846 kb on - strand at 2355.846 kb on - strand at 2355.846 kb on - strand at 2355.848 kb on - strand at 2355.873 kb on - strand at 2355.877 kb on + strand at 2355.887 kb on + strand at 2355.893 kb on - strand at 2355.925 kb on + strand at 2355.930 kb on + strand at 2355.933 kb on - strand at 2355.944 kb on + strand at 2355.952 kb on + strand at 2355.952 kb on + strand at 2355.952 kb on + strand at 2355.954 kb on + strand at 2355.962 kb on - strand at 2355.991 kb on + strand at 2356.012 kb on + strand at 2356.020 kb on - strand at 2356.830 kb on - strand at 2356.854 kb on + strand at 2356.857 kb on + strand at 2356.873 kb on + strand at 2356.874 kb on + strand at 2356.874 kb on + strand at 2356.948 kb on + strand, within CCNA_02209 at 2356.948 kb on + strand, within CCNA_02209 at 2356.956 kb on - strand, within CCNA_02209 at 2356.978 kb on + strand, within CCNA_02209 at 2356.987 kb on - strand, within CCNA_02209 at 2356.996 kb on + strand, within CCNA_02209 at 2357.004 kb on + strand, within CCNA_02209 at 2357.011 kb on + strand, within CCNA_02209 at 2357.019 kb on - strand, within CCNA_02209 at 2357.025 kb on + strand, within CCNA_02209 at 2357.036 kb on + strand, within CCNA_02209 at 2357.036 kb on + strand, within CCNA_02209 at 2357.036 kb on + strand, within CCNA_02209 at 2357.044 kb on + strand, within CCNA_02209 at 2357.044 kb on - strand, within CCNA_02209 at 2357.044 kb on - strand, within CCNA_02209 at 2357.063 kb on - strand, within CCNA_02209 at 2357.171 kb on + strand, within CCNA_02209 at 2357.180 kb on + strand, within CCNA_02209 at 2357.180 kb on + strand, within CCNA_02209 at 2357.180 kb on + strand, within CCNA_02209 at 2357.180 kb on + strand, within CCNA_02209 at 2357.180 kb on + strand, within CCNA_02209 at 2357.188 kb on - strand, within CCNA_02209 at 2357.188 kb on - strand, within CCNA_02209 at 2357.188 kb on - strand, within CCNA_02209 at 2357.188 kb on - strand, within CCNA_02209 at 2357.291 kb on + strand, within CCNA_02209 at 2357.297 kb on + strand, within CCNA_02209 at 2357.303 kb on + strand, within CCNA_02209 at 2357.305 kb on - strand, within CCNA_02209 at 2357.320 kb on + strand, within CCNA_02209 at 2357.328 kb on - strand, within CCNA_02209 at 2357.462 kb on - strand, within CCNA_02209 at 2357.478 kb on - strand, within CCNA_02209 at 2357.485 kb on + strand, within CCNA_02209 at 2357.491 kb on + strand, within CCNA_02209 at 2357.492 kb on + strand, within CCNA_02209 at 2357.493 kb on - strand, within CCNA_02209 at 2357.540 kb on + strand, within CCNA_02209 at 2357.571 kb on + strand, within CCNA_02209 at 2357.598 kb on + strand, within CCNA_02209 at 2357.606 kb on - strand, within CCNA_02209 at 2357.606 kb on - strand, within CCNA_02209 at 2357.628 kb on - strand, within CCNA_02209 at 2357.706 kb on - strand, within CCNA_02209 at 2357.786 kb on + strand at 2357.796 kb on + strand at 2357.804 kb on - strand at 2357.804 kb on - strand at 2357.804 kb on - strand at 2357.823 kb on - strand at 2357.828 kb on - strand at 2357.837 kb on + strand at 2357.837 kb on + strand at 2357.845 kb on - strand at 2357.918 kb on + strand at 2357.918 kb on + strand at 2357.918 kb on + strand at 2357.918 kb on + strand at 2357.923 kb on - strand at 2357.923 kb on - strand at 2357.938 kb on + strand at 2358.458 kb on + strand at 2358.497 kb on + strand at 2358.534 kb on + strand at 2358.664 kb on + strand at 2358.734 kb on + strand, within CCNA_02211 at 2358.739 kb on - strand, within CCNA_02211 at 2358.741 kb on - strand, within CCNA_02211 at 2358.742 kb on - strand, within CCNA_02211 at 2358.764 kb on + strand, within CCNA_02211 at 2358.766 kb on + strand, within CCNA_02211 at 2358.766 kb on + strand, within CCNA_02211 at 2358.766 kb on + strand, within CCNA_02211 at 2358.766 kb on + strand, within CCNA_02211 at 2358.772 kb on - strand, within CCNA_02211 at 2358.772 kb on - strand, within CCNA_02211 at 2358.794 kb on - strand, within CCNA_02211 at 2358.833 kb on + strand, within CCNA_02211
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 2,355,838 + +1.9 2,355,838 + +1.0 2,355,838 + +1.2 2,355,838 + +1.6 2,355,840 + +1.3 2,355,840 + +2.3 2,355,846 - +1.2 2,355,846 - -1.8 2,355,846 - -1.0 2,355,848 - -3.4 2,355,873 - +0.1 2,355,877 + +1.4 2,355,887 + +1.1 2,355,893 - +1.2 2,355,925 + +0.5 2,355,930 + +1.8 2,355,933 - -2.1 2,355,944 + -0.1 2,355,952 + +0.1 2,355,952 + +0.1 2,355,952 + -0.1 2,355,954 + +0.2 2,355,962 - +0.1 2,355,991 + +0.8 2,356,012 + +0.9 2,356,020 - -0.7 2,356,830 - -0.8 2,356,854 + +1.1 2,356,857 + +0.9 2,356,873 + +0.7 2,356,874 + -0.1 2,356,874 + +1.4 2,356,948 + CCNA_02209 0.12 +1.1 2,356,948 + CCNA_02209 0.12 +0.9 2,356,956 - CCNA_02209 0.13 -2.0 2,356,978 + CCNA_02209 0.15 +0.1 2,356,987 - CCNA_02209 0.16 -1.0 2,356,996 + CCNA_02209 0.17 -0.1 2,357,004 + CCNA_02209 0.17 +1.7 2,357,011 + CCNA_02209 0.18 +0.2 2,357,019 - CCNA_02209 0.19 -0.6 2,357,025 + CCNA_02209 0.20 -0.8 2,357,036 + CCNA_02209 0.21 -0.6 2,357,036 + CCNA_02209 0.21 +0.1 2,357,036 + CCNA_02209 0.21 +0.0 2,357,044 + CCNA_02209 0.21 -0.2 2,357,044 - CCNA_02209 0.21 -0.2 2,357,044 - CCNA_02209 0.21 -0.8 2,357,063 - CCNA_02209 0.23 -0.9 2,357,171 + CCNA_02209 0.34 -1.5 2,357,180 + CCNA_02209 0.35 +0.0 2,357,180 + CCNA_02209 0.35 +0.4 2,357,180 + CCNA_02209 0.35 -1.5 2,357,180 + CCNA_02209 0.35 -0.8 2,357,180 + CCNA_02209 0.35 -1.8 2,357,188 - CCNA_02209 0.35 -1.8 2,357,188 - CCNA_02209 0.35 -1.7 2,357,188 - CCNA_02209 0.35 -2.9 2,357,188 - CCNA_02209 0.35 +0.8 2,357,291 + CCNA_02209 0.46 -0.6 2,357,297 + CCNA_02209 0.46 -0.3 2,357,303 + CCNA_02209 0.47 -2.3 2,357,305 - CCNA_02209 0.47 -0.1 2,357,320 + CCNA_02209 0.48 -0.2 2,357,328 - CCNA_02209 0.49 -2.1 2,357,462 - CCNA_02209 0.62 -0.9 2,357,478 - CCNA_02209 0.64 -0.2 2,357,485 + CCNA_02209 0.65 +0.9 2,357,491 + CCNA_02209 0.65 -1.3 2,357,492 + CCNA_02209 0.65 +0.9 2,357,493 - CCNA_02209 0.65 -0.1 2,357,540 + CCNA_02209 0.70 -1.4 2,357,571 + CCNA_02209 0.73 -1.6 2,357,598 + CCNA_02209 0.76 +0.1 2,357,606 - CCNA_02209 0.76 -1.2 2,357,606 - CCNA_02209 0.76 -0.4 2,357,628 - CCNA_02209 0.78 +0.7 2,357,706 - CCNA_02209 0.86 -0.2 2,357,786 + -1.8 2,357,796 + -0.2 2,357,804 - +0.5 2,357,804 - -2.4 2,357,804 - -1.3 2,357,823 - -1.2 2,357,828 - -0.2 2,357,837 + -1.2 2,357,837 + -0.6 2,357,845 - -0.7 2,357,918 + +0.1 2,357,918 + -0.3 2,357,918 + +0.9 2,357,918 + -0.1 2,357,923 - -0.6 2,357,923 - -1.5 2,357,938 + -0.3 2,358,458 + -1.0 2,358,497 + +0.4 2,358,534 + -0.4 2,358,664 + +1.6 2,358,734 + CCNA_02211 0.16 -0.1 2,358,739 - CCNA_02211 0.16 -1.4 2,358,741 - CCNA_02211 0.16 +0.2 2,358,742 - CCNA_02211 0.16 -1.2 2,358,764 + CCNA_02211 0.18 +0.1 2,358,766 + CCNA_02211 0.18 +0.2 2,358,766 + CCNA_02211 0.18 +0.6 2,358,766 + CCNA_02211 0.18 +0.5 2,358,766 + CCNA_02211 0.18 -0.3 2,358,772 - CCNA_02211 0.19 +0.4 2,358,772 - CCNA_02211 0.19 -0.9 2,358,794 - CCNA_02211 0.21 -0.6 2,358,833 + CCNA_02211 0.24 -0.5
Or see this region's nucleotide sequence