Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01773 and CCNA_01774 are separated by 78 nucleotides CCNA_01774 and CCNA_01775 are separated by 160 nucleotides CCNA_01775 and CCNA_01776 are separated by 125 nucleotides
CCNA_01773: CCNA_01773 - SNARE-associated family membrane protein, at 1,899,409 to 1,900,026
_01773
CCNA_01774: CCNA_01774 - phosphoribosylglycinamide formyltransferase, at 1,900,105 to 1,900,686
_01774
CCNA_01775: CCNA_01775 - phosphoribosylformylglycinamidine cyclo-ligase, at 1,900,847 to 1,901,872
_01775
CCNA_01776: CCNA_01776 - ribonuclease D, at 1,901,998 to 1,903,167
_01776
Position (kb)
1900
1901
1902 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1899.850 kb on - strand, within CCNA_01773 at 1899.850 kb on - strand, within CCNA_01773 at 1899.891 kb on + strand, within CCNA_01773 at 1899.891 kb on + strand, within CCNA_01773 at 1899.925 kb on + strand, within CCNA_01773 at 1899.936 kb on + strand, within CCNA_01773 at 1899.943 kb on - strand, within CCNA_01773 at 1899.953 kb on - strand at 1900.003 kb on + strand at 1900.031 kb on + strand at 1900.096 kb on - strand at 1900.115 kb on + strand at 1900.133 kb on - strand at 1900.277 kb on + strand, within CCNA_01774 at 1900.352 kb on + strand, within CCNA_01774 at 1900.371 kb on + strand, within CCNA_01774 at 1900.468 kb on + strand, within CCNA_01774 at 1900.476 kb on - strand at 1900.543 kb on + strand, within CCNA_01774 at 1900.583 kb on - strand, within CCNA_01774 at 1900.701 kb on - strand at 1900.800 kb on - strand at 1900.819 kb on + strand at 1900.845 kb on + strand at 1900.845 kb on + strand at 1900.845 kb on + strand at 1900.851 kb on + strand at 1900.853 kb on - strand at 1900.853 kb on - strand at 1900.859 kb on - strand at 1900.878 kb on - strand at 1900.900 kb on - strand at 1901.000 kb on + strand, within CCNA_01775 at 1901.034 kb on + strand, within CCNA_01775 at 1901.216 kb on - strand, within CCNA_01775 at 1901.238 kb on + strand, within CCNA_01775 at 1901.243 kb on + strand, within CCNA_01775 at 1901.251 kb on - strand, within CCNA_01775 at 1901.257 kb on - strand, within CCNA_01775 at 1901.304 kb on + strand, within CCNA_01775 at 1901.317 kb on - strand, within CCNA_01775 at 1901.332 kb on - strand, within CCNA_01775 at 1901.396 kb on + strand, within CCNA_01775 at 1901.488 kb on - strand, within CCNA_01775 at 1901.513 kb on - strand, within CCNA_01775 at 1901.599 kb on - strand, within CCNA_01775 at 1901.616 kb on - strand, within CCNA_01775 at 1901.656 kb on + strand, within CCNA_01775 at 1901.682 kb on + strand, within CCNA_01775 at 1901.707 kb on - strand, within CCNA_01775 at 1901.707 kb on - strand, within CCNA_01775 at 1901.775 kb on + strand at 1901.783 kb on - strand at 1901.783 kb on - strand at 1901.783 kb on - strand at 1901.783 kb on - strand at 1901.841 kb on + strand at 1901.861 kb on - strand at 1901.897 kb on - strand at 1901.898 kb on + strand at 1901.906 kb on - strand at 1901.959 kb on - strand at 1901.959 kb on - strand at 1901.960 kb on - strand at 1901.967 kb on + strand at 1901.985 kb on - strand at 1901.985 kb on - strand at 1902.004 kb on - strand at 1902.015 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 1,899,850 - CCNA_01773 0.71 +1.4 1,899,850 - CCNA_01773 0.71 +1.8 1,899,891 + CCNA_01773 0.78 +0.0 1,899,891 + CCNA_01773 0.78 -1.2 1,899,925 + CCNA_01773 0.83 -0.1 1,899,936 + CCNA_01773 0.85 -0.1 1,899,943 - CCNA_01773 0.86 -0.7 1,899,953 - +2.9 1,900,003 + +0.1 1,900,031 + -0.6 1,900,096 - +0.9 1,900,115 + +2.4 1,900,133 - -0.6 1,900,277 + CCNA_01774 0.30 -0.2 1,900,352 + CCNA_01774 0.42 +0.6 1,900,371 + CCNA_01774 0.46 +1.0 1,900,468 + CCNA_01774 0.62 +0.8 1,900,476 - +1.4 1,900,543 + CCNA_01774 0.75 +0.8 1,900,583 - CCNA_01774 0.82 +0.1 1,900,701 - +2.2 1,900,800 - +2.3 1,900,819 + -0.7 1,900,845 + +1.1 1,900,845 + -1.6 1,900,845 + -0.4 1,900,851 + +0.1 1,900,853 - +2.3 1,900,853 - +3.0 1,900,859 - +2.2 1,900,878 - +1.9 1,900,900 - +0.7 1,901,000 + CCNA_01775 0.15 +0.0 1,901,034 + CCNA_01775 0.18 -0.5 1,901,216 - CCNA_01775 0.36 +1.3 1,901,238 + CCNA_01775 0.38 +1.1 1,901,243 + CCNA_01775 0.39 -1.1 1,901,251 - CCNA_01775 0.39 +0.4 1,901,257 - CCNA_01775 0.40 +1.0 1,901,304 + CCNA_01775 0.45 -1.0 1,901,317 - CCNA_01775 0.46 +1.0 1,901,332 - CCNA_01775 0.47 +1.9 1,901,396 + CCNA_01775 0.54 +1.0 1,901,488 - CCNA_01775 0.62 +2.7 1,901,513 - CCNA_01775 0.65 +0.2 1,901,599 - CCNA_01775 0.73 +1.2 1,901,616 - CCNA_01775 0.75 +2.0 1,901,656 + CCNA_01775 0.79 -0.5 1,901,682 + CCNA_01775 0.81 -0.3 1,901,707 - CCNA_01775 0.84 +1.1 1,901,707 - CCNA_01775 0.84 +1.2 1,901,775 + +0.8 1,901,783 - -0.3 1,901,783 - +0.9 1,901,783 - +2.9 1,901,783 - +0.9 1,901,841 + -0.4 1,901,861 - +0.5 1,901,897 - +0.6 1,901,898 + +0.5 1,901,906 - +0.7 1,901,959 - -0.0 1,901,959 - -0.7 1,901,960 - -1.7 1,901,967 + +4.4 1,901,985 - +0.9 1,901,985 - -1.9 1,902,004 - +1.6 1,902,015 - -1.2
Or see this region's nucleotide sequence