Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01731

Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01730 and CCNA_01731 overlap by 4 nucleotidesCCNA_01731 and CCNA_01732 overlap by 4 nucleotides CCNA_01730: CCNA_01730 - amidophosphoribosyltransferase, at 1,858,257 to 1,859,759 _01730 CCNA_01731: CCNA_01731 - colicin V production protein CvpA, at 1,859,756 to 1,860,373 _01731 CCNA_01732: CCNA_01732 - DNA repair protein RadA, at 1,860,370 to 1,861,752 _01732 Position (kb) 1859 1860 1861Strain fitness (log2 ratio) -1 0 1 2 3at 1858.804 kb on + strand, within CCNA_01730at 1858.812 kb on - strand, within CCNA_01730at 1858.883 kb on + strand, within CCNA_01730at 1858.892 kb on - strand, within CCNA_01730at 1858.938 kb on + strand, within CCNA_01730at 1858.990 kb on + strand, within CCNA_01730at 1858.998 kb on - strand, within CCNA_01730at 1859.012 kb on - strand, within CCNA_01730at 1859.104 kb on - strand, within CCNA_01730at 1859.251 kb on + strand, within CCNA_01730at 1859.290 kb on + strand, within CCNA_01730at 1859.306 kb on - strand, within CCNA_01730at 1859.338 kb on + strand, within CCNA_01730at 1859.348 kb on + strand, within CCNA_01730at 1859.356 kb on - strand, within CCNA_01730at 1859.358 kb on - strand, within CCNA_01730at 1859.358 kb on - strand, within CCNA_01730at 1859.361 kb on + strand, within CCNA_01730at 1859.406 kb on - strand, within CCNA_01730at 1859.406 kb on - strand, within CCNA_01730at 1859.504 kb on + strand, within CCNA_01730at 1859.509 kb on + strand, within CCNA_01730at 1859.514 kb on + strand, within CCNA_01730at 1859.544 kb on - strand, within CCNA_01730at 1859.549 kb on - strand, within CCNA_01730at 1859.551 kb on + strand, within CCNA_01730at 1859.559 kb on - strand, within CCNA_01730at 1859.576 kb on - strand, within CCNA_01730at 1859.604 kb on + strand, within CCNA_01730at 1859.604 kb on + strand, within CCNA_01730at 1859.707 kb on - strandat 1859.785 kb on - strandat 1859.852 kb on + strand, within CCNA_01731at 1859.860 kb on - strand, within CCNA_01731at 1859.860 kb on - strand, within CCNA_01731at 1859.860 kb on - strand, within CCNA_01731at 1859.906 kb on - strand, within CCNA_01731at 1859.939 kb on - strand, within CCNA_01731at 1859.976 kb on - strand, within CCNA_01731at 1859.990 kb on + strand, within CCNA_01731at 1859.998 kb on - strand, within CCNA_01731at 1859.998 kb on - strand, within CCNA_01731at 1860.053 kb on - strand, within CCNA_01731at 1860.197 kb on + strand, within CCNA_01731at 1860.234 kb on - strand, within CCNA_01731at 1860.239 kb on - strand, within CCNA_01731at 1860.288 kb on - strand, within CCNA_01731at 1860.333 kb on - strandat 1860.373 kb on + strandat 1860.380 kb on - strandat 1860.381 kb on - strandat 1860.390 kb on - strandat 1860.418 kb on + strandat 1860.458 kb on + strandat 1860.493 kb on + strandat 1860.539 kb on - strand, within CCNA_01732at 1860.589 kb on + strand, within CCNA_01732at 1860.589 kb on + strand, within CCNA_01732at 1860.592 kb on - strand, within CCNA_01732at 1860.597 kb on - strand, within CCNA_01732at 1860.622 kb on + strand, within CCNA_01732at 1860.622 kb on + strand, within CCNA_01732at 1860.719 kb on - strand, within CCNA_01732at 1860.740 kb on + strand, within CCNA_01732at 1860.766 kb on + strand, within CCNA_01732at 1860.922 kb on + strand, within CCNA_01732at 1860.922 kb on + strandat 1860.947 kb on - strand, within CCNA_01732at 1860.984 kb on - strand, within CCNA_01732at 1861.011 kb on - strand, within CCNA_01732at 1861.063 kb on + strand, within CCNA_01732at 1861.123 kb on - strand, within CCNA_01732at 1861.190 kb on - strand, within CCNA_01732at 1861.214 kb on - strand, within CCNA_01732at 1861.216 kb on + strand, within CCNA_01732at 1861.216 kb on + strand, within CCNA_01732at 1861.234 kb on - strand, within CCNA_01732at 1861.234 kb on - strand, within CCNA_01732at 1861.291 kb on - strand, within CCNA_01732at 1861.340 kb on - strand, within CCNA_01732at 1861.357 kb on + strand, within CCNA_01732

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol%
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1,858,804 + CCNA_01730 0.36 -0.6
1,858,812 - CCNA_01730 0.37 +1.1
1,858,883 + CCNA_01730 0.42 -1.3
1,858,892 - CCNA_01730 0.42 +2.1
1,858,938 + CCNA_01730 0.45 +0.0
1,858,990 + CCNA_01730 0.49 -1.5
1,858,998 - CCNA_01730 0.49 +2.8
1,859,012 - CCNA_01730 0.50 +1.9
1,859,104 - CCNA_01730 0.56 +2.0
1,859,251 + CCNA_01730 0.66 +0.0
1,859,290 + CCNA_01730 0.69 +1.5
1,859,306 - CCNA_01730 0.70 +2.2
1,859,338 + CCNA_01730 0.72 +2.2
1,859,348 + CCNA_01730 0.73 +0.1
1,859,356 - CCNA_01730 0.73 +1.8
1,859,358 - CCNA_01730 0.73 +1.3
1,859,358 - CCNA_01730 0.73 +2.0
1,859,361 + CCNA_01730 0.73 -0.2
1,859,406 - CCNA_01730 0.76 +0.8
1,859,406 - CCNA_01730 0.76 +1.9
1,859,504 + CCNA_01730 0.83 -0.5
1,859,509 + CCNA_01730 0.83 +2.1
1,859,514 + CCNA_01730 0.84 -0.3
1,859,544 - CCNA_01730 0.86 +1.9
1,859,549 - CCNA_01730 0.86 +0.9
1,859,551 + CCNA_01730 0.86 -0.2
1,859,559 - CCNA_01730 0.87 +1.7
1,859,576 - CCNA_01730 0.88 +1.3
1,859,604 + CCNA_01730 0.90 +1.8
1,859,604 + CCNA_01730 0.90 -1.1
1,859,707 - +1.7
1,859,785 - +1.5
1,859,852 + CCNA_01731 0.16 +0.4
1,859,860 - CCNA_01731 0.17 +1.7
1,859,860 - CCNA_01731 0.17 +1.4
1,859,860 - CCNA_01731 0.17 +2.4
1,859,906 - CCNA_01731 0.24 +1.6
1,859,939 - CCNA_01731 0.30 +1.0
1,859,976 - CCNA_01731 0.36 +2.1
1,859,990 + CCNA_01731 0.38 -0.9
1,859,998 - CCNA_01731 0.39 +1.4
1,859,998 - CCNA_01731 0.39 +1.6
1,860,053 - CCNA_01731 0.48 +1.6
1,860,197 + CCNA_01731 0.71 -0.9
1,860,234 - CCNA_01731 0.77 +2.1
1,860,239 - CCNA_01731 0.78 +1.0
1,860,288 - CCNA_01731 0.86 +0.7
1,860,333 - -0.0
1,860,373 + +1.1
1,860,380 - +1.7
1,860,381 - +2.0
1,860,390 - +0.0
1,860,418 + +0.0
1,860,458 + +0.3
1,860,493 + +0.0
1,860,539 - CCNA_01732 0.12 +0.3
1,860,589 + CCNA_01732 0.16 -1.1
1,860,589 + CCNA_01732 0.16 -0.3
1,860,592 - CCNA_01732 0.16 +0.7
1,860,597 - CCNA_01732 0.16 +1.2
1,860,622 + CCNA_01732 0.18 +0.4
1,860,622 + CCNA_01732 0.18 +2.0
1,860,719 - CCNA_01732 0.25 -1.3
1,860,740 + CCNA_01732 0.27 +2.1
1,860,766 + CCNA_01732 0.29 -1.1
1,860,922 + CCNA_01732 0.40 +1.6
1,860,922 + +3.0
1,860,947 - CCNA_01732 0.42 +1.2
1,860,984 - CCNA_01732 0.44 +1.6
1,861,011 - CCNA_01732 0.46 +0.3
1,861,063 + CCNA_01732 0.50 +0.3
1,861,123 - CCNA_01732 0.54 +2.2
1,861,190 - CCNA_01732 0.59 +1.8
1,861,214 - CCNA_01732 0.61 -0.4
1,861,216 + CCNA_01732 0.61 +0.4
1,861,216 + CCNA_01732 0.61 +0.9
1,861,234 - CCNA_01732 0.62 +1.3
1,861,234 - CCNA_01732 0.62 +1.7
1,861,291 - CCNA_01732 0.67 -0.3
1,861,340 - CCNA_01732 0.70 +0.6
1,861,357 + CCNA_01732 0.71 +0.2

Or see this region's nucleotide sequence