Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01686 and CCNA_01687 overlap by 4 nucleotides CCNA_01687 and CCNA_01688 overlap by 4 nucleotides CCNA_01688 and CCNA_01689 are separated by 92 nucleotides
CCNA_01686: CCNA_01686 - exopolyphosphatase GppA, at 1,813,006 to 1,814,112
_01686
CCNA_01687: CCNA_01687 - FtsJ-family 23S rRNA methylase, at 1,814,109 to 1,814,819
_01687
CCNA_01688: CCNA_01688 - potassium channel protein, at 1,814,816 to 1,815,859
_01688
CCNA_01689: CCNA_01689 - inosine-5'-monophosphate dehydrogenase, at 1,815,952 to 1,817,415
_01689
Position (kb)
1814
1815
1816 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1813.885 kb on - strand, within CCNA_01686 at 1813.900 kb on + strand, within CCNA_01686 at 1813.956 kb on + strand, within CCNA_01686 at 1813.956 kb on + strand, within CCNA_01686 at 1813.956 kb on + strand, within CCNA_01686 at 1813.956 kb on + strand, within CCNA_01686 at 1813.956 kb on + strand, within CCNA_01686 at 1813.964 kb on - strand, within CCNA_01686 at 1813.964 kb on - strand, within CCNA_01686 at 1813.964 kb on - strand, within CCNA_01686 at 1813.964 kb on - strand, within CCNA_01686 at 1813.964 kb on - strand, within CCNA_01686 at 1813.966 kb on + strand, within CCNA_01686 at 1813.966 kb on + strand, within CCNA_01686 at 1814.012 kb on + strand at 1814.013 kb on + strand at 1814.020 kb on - strand at 1814.036 kb on - strand at 1814.036 kb on - strand at 1814.810 kb on - strand at 1814.820 kb on + strand at 1814.820 kb on + strand at 1814.820 kb on + strand at 1814.828 kb on - strand at 1814.828 kb on - strand at 1814.834 kb on - strand at 1814.857 kb on + strand at 1814.872 kb on + strand at 1814.923 kb on - strand, within CCNA_01688 at 1814.965 kb on + strand, within CCNA_01688 at 1814.967 kb on - strand, within CCNA_01688 at 1814.972 kb on - strand, within CCNA_01688 at 1814.994 kb on + strand, within CCNA_01688 at 1814.997 kb on - strand, within CCNA_01688 at 1815.053 kb on + strand, within CCNA_01688 at 1815.063 kb on - strand, within CCNA_01688 at 1815.094 kb on + strand, within CCNA_01688 at 1815.102 kb on - strand, within CCNA_01688 at 1815.102 kb on - strand, within CCNA_01688 at 1815.131 kb on + strand, within CCNA_01688 at 1815.154 kb on - strand, within CCNA_01688 at 1815.171 kb on + strand, within CCNA_01688 at 1815.171 kb on + strand, within CCNA_01688 at 1815.176 kb on + strand, within CCNA_01688 at 1815.198 kb on + strand, within CCNA_01688 at 1815.211 kb on - strand, within CCNA_01688 at 1815.241 kb on + strand, within CCNA_01688 at 1815.313 kb on + strand, within CCNA_01688 at 1815.361 kb on + strand, within CCNA_01688 at 1815.361 kb on + strand, within CCNA_01688 at 1815.361 kb on + strand, within CCNA_01688 at 1815.361 kb on + strand, within CCNA_01688 at 1815.361 kb on + strand, within CCNA_01688 at 1815.368 kb on + strand, within CCNA_01688 at 1815.368 kb on + strand, within CCNA_01688 at 1815.381 kb on - strand, within CCNA_01688 at 1815.385 kb on + strand, within CCNA_01688 at 1815.393 kb on - strand, within CCNA_01688 at 1815.406 kb on - strand, within CCNA_01688 at 1815.437 kb on - strand, within CCNA_01688 at 1815.443 kb on + strand, within CCNA_01688 at 1815.469 kb on + strand, within CCNA_01688 at 1815.469 kb on + strand, within CCNA_01688 at 1815.477 kb on - strand, within CCNA_01688 at 1815.529 kb on + strand, within CCNA_01688 at 1815.532 kb on - strand, within CCNA_01688 at 1815.558 kb on + strand, within CCNA_01688 at 1815.568 kb on - strand, within CCNA_01688 at 1815.590 kb on - strand, within CCNA_01688 at 1815.614 kb on - strand, within CCNA_01688 at 1815.638 kb on + strand, within CCNA_01688 at 1815.639 kb on + strand, within CCNA_01688 at 1815.653 kb on - strand, within CCNA_01688 at 1815.670 kb on + strand, within CCNA_01688 at 1815.696 kb on - strand, within CCNA_01688 at 1815.710 kb on - strand, within CCNA_01688 at 1815.712 kb on + strand, within CCNA_01688 at 1815.712 kb on + strand, within CCNA_01688 at 1815.717 kb on + strand, within CCNA_01688 at 1815.717 kb on + strand, within CCNA_01688 at 1815.730 kb on - strand, within CCNA_01688 at 1815.753 kb on - strand, within CCNA_01688 at 1815.757 kb on - strand at 1815.769 kb on + strand at 1815.769 kb on + strand at 1815.769 kb on + strand at 1815.777 kb on - strand at 1815.824 kb on - strand at 1815.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 1,813,885 - CCNA_01686 0.79 -0.9 1,813,900 + CCNA_01686 0.81 -0.2 1,813,956 + CCNA_01686 0.86 +0.6 1,813,956 + CCNA_01686 0.86 -0.0 1,813,956 + CCNA_01686 0.86 -0.2 1,813,956 + CCNA_01686 0.86 -0.6 1,813,956 + CCNA_01686 0.86 -1.2 1,813,964 - CCNA_01686 0.87 -0.0 1,813,964 - CCNA_01686 0.87 +0.8 1,813,964 - CCNA_01686 0.87 +0.3 1,813,964 - CCNA_01686 0.87 -1.4 1,813,964 - CCNA_01686 0.87 -1.2 1,813,966 + CCNA_01686 0.87 +0.6 1,813,966 + CCNA_01686 0.87 -0.6 1,814,012 + -1.7 1,814,013 + -1.6 1,814,020 - +0.2 1,814,036 - -0.3 1,814,036 - +0.3 1,814,810 - +0.8 1,814,820 + +2.0 1,814,820 + +1.6 1,814,820 + +1.9 1,814,828 - +2.2 1,814,828 - +0.6 1,814,834 - +0.3 1,814,857 + +1.8 1,814,872 + -1.3 1,814,923 - CCNA_01688 0.10 -0.7 1,814,965 + CCNA_01688 0.14 -0.5 1,814,967 - CCNA_01688 0.14 +0.2 1,814,972 - CCNA_01688 0.15 +0.1 1,814,994 + CCNA_01688 0.17 +0.4 1,814,997 - CCNA_01688 0.17 +1.0 1,815,053 + CCNA_01688 0.23 +1.8 1,815,063 - CCNA_01688 0.24 -0.0 1,815,094 + CCNA_01688 0.27 +0.6 1,815,102 - CCNA_01688 0.27 +0.3 1,815,102 - CCNA_01688 0.27 +0.6 1,815,131 + CCNA_01688 0.30 -1.3 1,815,154 - CCNA_01688 0.32 +0.3 1,815,171 + CCNA_01688 0.34 -1.5 1,815,171 + CCNA_01688 0.34 +1.2 1,815,176 + CCNA_01688 0.34 +0.9 1,815,198 + CCNA_01688 0.37 +0.4 1,815,211 - CCNA_01688 0.38 -1.7 1,815,241 + CCNA_01688 0.41 +1.7 1,815,313 + CCNA_01688 0.48 +0.1 1,815,361 + CCNA_01688 0.52 +0.3 1,815,361 + CCNA_01688 0.52 -0.7 1,815,361 + CCNA_01688 0.52 +1.6 1,815,361 + CCNA_01688 0.52 -0.7 1,815,361 + CCNA_01688 0.52 -0.6 1,815,368 + CCNA_01688 0.53 +1.6 1,815,368 + CCNA_01688 0.53 +0.8 1,815,381 - CCNA_01688 0.54 -0.5 1,815,385 + CCNA_01688 0.55 +0.8 1,815,393 - CCNA_01688 0.55 +0.8 1,815,406 - CCNA_01688 0.57 -1.1 1,815,437 - CCNA_01688 0.59 -0.1 1,815,443 + CCNA_01688 0.60 -1.9 1,815,469 + CCNA_01688 0.63 +0.3 1,815,469 + CCNA_01688 0.63 -0.4 1,815,477 - CCNA_01688 0.63 +0.1 1,815,529 + CCNA_01688 0.68 -1.0 1,815,532 - CCNA_01688 0.69 -2.2 1,815,558 + CCNA_01688 0.71 -0.3 1,815,568 - CCNA_01688 0.72 -0.2 1,815,590 - CCNA_01688 0.74 -1.3 1,815,614 - CCNA_01688 0.76 +1.5 1,815,638 + CCNA_01688 0.79 +0.6 1,815,639 + CCNA_01688 0.79 +0.3 1,815,653 - CCNA_01688 0.80 -1.4 1,815,670 + CCNA_01688 0.82 -0.0 1,815,696 - CCNA_01688 0.84 +0.5 1,815,710 - CCNA_01688 0.86 +0.5 1,815,712 + CCNA_01688 0.86 -0.6 1,815,712 + CCNA_01688 0.86 -0.7 1,815,717 + CCNA_01688 0.86 +0.2 1,815,717 + CCNA_01688 0.86 -0.1 1,815,730 - CCNA_01688 0.88 -1.7 1,815,753 - CCNA_01688 0.90 -0.8 1,815,757 - +0.1 1,815,769 + +0.4 1,815,769 + +1.0 1,815,769 + -1.4 1,815,777 - +0.9 1,815,824 - -0.9 1,815,839 - -1.1
Or see this region's nucleotide sequence