Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01253 and CCNA_01254 overlap by 1 nucleotides CCNA_01254 and CCNA_01255 are separated by 100 nucleotides CCNA_01255 and CCNA_01256 are separated by 437 nucleotides
CCNA_01253: CCNA_01253 - dihydrodipicolinate synthase, at 1,381,534 to 1,382,418
_01253
CCNA_01254: CCNA_01254 - SsrA-binding protein, at 1,382,418 to 1,382,876
_01254
CCNA_01255: CCNA_01255 - hypothetical protein, at 1,382,977 to 1,383,126
_01255
CCNA_01256: CCNA_01256 - hypothetical protein, at 1,383,564 to 1,384,559
_01256
Position (kb)
1382
1383
1384 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1382.402 kb on + strand at 1382.402 kb on + strand at 1382.852 kb on + strand at 1382.852 kb on + strand at 1382.860 kb on - strand at 1382.860 kb on - strand at 1382.866 kb on - strand at 1382.889 kb on + strand at 1382.975 kb on + strand at 1382.981 kb on - strand at 1383.008 kb on + strand, within CCNA_01255 at 1383.009 kb on - strand, within CCNA_01255 at 1383.015 kb on - strand, within CCNA_01255 at 1383.050 kb on + strand, within CCNA_01255 at 1383.082 kb on + strand, within CCNA_01255 at 1383.082 kb on + strand, within CCNA_01255 at 1383.083 kb on + strand, within CCNA_01255 at 1383.090 kb on - strand, within CCNA_01255 at 1383.107 kb on - strand, within CCNA_01255 at 1383.139 kb on + strand at 1383.162 kb on + strand at 1383.207 kb on + strand at 1383.216 kb on + strand at 1383.225 kb on - strand at 1383.308 kb on + strand at 1383.316 kb on - strand at 1383.339 kb on - strand at 1383.356 kb on + strand at 1383.364 kb on - strand at 1383.416 kb on + strand at 1383.423 kb on + strand at 1383.453 kb on - strand at 1383.549 kb on + strand at 1383.551 kb on + strand at 1383.552 kb on - strand at 1383.552 kb on - strand at 1383.557 kb on - strand at 1383.562 kb on + strand at 1383.562 kb on + strand at 1383.595 kb on - strand at 1383.595 kb on - strand at 1383.602 kb on - strand at 1383.613 kb on + strand at 1383.640 kb on - strand at 1383.665 kb on + strand, within CCNA_01256 at 1383.681 kb on + strand, within CCNA_01256 at 1383.689 kb on - strand, within CCNA_01256 at 1383.746 kb on + strand, within CCNA_01256 at 1383.746 kb on + strand, within CCNA_01256 at 1383.746 kb on + strand, within CCNA_01256 at 1383.746 kb on + strand, within CCNA_01256 at 1383.754 kb on - strand, within CCNA_01256 at 1383.754 kb on - strand, within CCNA_01256 at 1383.754 kb on - strand, within CCNA_01256 at 1383.795 kb on - strand, within CCNA_01256 at 1383.802 kb on + strand, within CCNA_01256 at 1383.802 kb on + strand, within CCNA_01256 at 1383.807 kb on + strand, within CCNA_01256 at 1383.811 kb on - strand, within CCNA_01256 at 1383.858 kb on + strand, within CCNA_01256 at 1383.895 kb on - strand, within CCNA_01256 at 1383.912 kb on - strand, within CCNA_01256 at 1383.912 kb on - strand, within CCNA_01256 at 1383.912 kb on - strand, within CCNA_01256 at 1383.922 kb on - strand, within CCNA_01256 at 1383.952 kb on - strand, within CCNA_01256 at 1383.954 kb on - strand at 1383.976 kb on + strand, within CCNA_01256 at 1383.976 kb on + strand, within CCNA_01256 at 1383.976 kb on + strand, within CCNA_01256 at 1383.984 kb on - strand, within CCNA_01256 at 1383.984 kb on - strand, within CCNA_01256 at 1383.984 kb on - strand, within CCNA_01256 at 1384.048 kb on + strand, within CCNA_01256 at 1384.055 kb on - strand, within CCNA_01256 at 1384.069 kb on + strand, within CCNA_01256 at 1384.069 kb on + strand, within CCNA_01256 at 1384.071 kb on + strand, within CCNA_01256 at 1384.071 kb on + strand, within CCNA_01256 at 1384.077 kb on - strand, within CCNA_01256 at 1384.077 kb on - strand, within CCNA_01256 at 1384.079 kb on - strand, within CCNA_01256 at 1384.079 kb on - strand, within CCNA_01256 at 1384.079 kb on - strand, within CCNA_01256 at 1384.099 kb on - strand, within CCNA_01256
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 1,382,402 + +2.6 1,382,402 + +1.6 1,382,852 + +1.3 1,382,852 + +2.2 1,382,860 - +0.2 1,382,860 - -0.0 1,382,866 - -0.6 1,382,889 + +0.8 1,382,975 + +0.3 1,382,981 - +1.1 1,383,008 + CCNA_01255 0.21 +0.2 1,383,009 - CCNA_01255 0.21 +2.0 1,383,015 - CCNA_01255 0.25 +1.8 1,383,050 + CCNA_01255 0.49 -1.4 1,383,082 + CCNA_01255 0.70 +0.2 1,383,082 + CCNA_01255 0.70 -1.1 1,383,083 + CCNA_01255 0.71 +0.5 1,383,090 - CCNA_01255 0.75 -0.3 1,383,107 - CCNA_01255 0.87 +1.3 1,383,139 + -1.8 1,383,162 + -1.1 1,383,207 + +0.1 1,383,216 + -1.4 1,383,225 - +1.3 1,383,308 + -0.6 1,383,316 - +0.9 1,383,339 - -2.1 1,383,356 + -0.4 1,383,364 - +1.4 1,383,416 + -1.6 1,383,423 + -0.6 1,383,453 - -2.0 1,383,549 + -1.7 1,383,551 + -0.6 1,383,552 - +0.6 1,383,552 - +0.1 1,383,557 - +1.6 1,383,562 + -0.8 1,383,562 + -2.5 1,383,595 - -0.1 1,383,595 - -0.4 1,383,602 - +0.4 1,383,613 + -1.3 1,383,640 - +0.8 1,383,665 + CCNA_01256 0.10 +0.3 1,383,681 + CCNA_01256 0.12 -0.2 1,383,689 - CCNA_01256 0.13 +1.2 1,383,746 + CCNA_01256 0.18 -1.9 1,383,746 + CCNA_01256 0.18 -0.6 1,383,746 + CCNA_01256 0.18 +1.7 1,383,746 + CCNA_01256 0.18 +0.1 1,383,754 - CCNA_01256 0.19 +0.8 1,383,754 - CCNA_01256 0.19 +2.1 1,383,754 - CCNA_01256 0.19 +3.1 1,383,795 - CCNA_01256 0.23 -1.2 1,383,802 + CCNA_01256 0.24 -0.8 1,383,802 + CCNA_01256 0.24 -1.1 1,383,807 + CCNA_01256 0.24 -1.3 1,383,811 - CCNA_01256 0.25 +0.9 1,383,858 + CCNA_01256 0.30 +0.2 1,383,895 - CCNA_01256 0.33 +0.1 1,383,912 - CCNA_01256 0.35 +0.1 1,383,912 - CCNA_01256 0.35 -0.3 1,383,912 - CCNA_01256 0.35 -0.7 1,383,922 - CCNA_01256 0.36 -0.4 1,383,952 - CCNA_01256 0.39 -1.1 1,383,954 - +1.0 1,383,976 + CCNA_01256 0.41 -0.6 1,383,976 + CCNA_01256 0.41 -0.2 1,383,976 + CCNA_01256 0.41 -0.6 1,383,984 - CCNA_01256 0.42 -1.3 1,383,984 - CCNA_01256 0.42 -0.8 1,383,984 - CCNA_01256 0.42 -0.3 1,384,048 + CCNA_01256 0.49 +0.8 1,384,055 - CCNA_01256 0.49 +0.2 1,384,069 + CCNA_01256 0.51 +0.6 1,384,069 + CCNA_01256 0.51 +0.4 1,384,071 + CCNA_01256 0.51 -0.1 1,384,071 + CCNA_01256 0.51 -1.0 1,384,077 - CCNA_01256 0.52 -1.7 1,384,077 - CCNA_01256 0.52 -2.3 1,384,079 - CCNA_01256 0.52 +1.1 1,384,079 - CCNA_01256 0.52 +0.2 1,384,079 - CCNA_01256 0.52 -2.3 1,384,099 - CCNA_01256 0.54 -0.8
Or see this region's nucleotide sequence