Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01043

Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Dimethyl Sulfoxide 7.5 vol%
1,138,835	+		CCNA_01042	0.63	-1.5
1,138,838	-		CCNA_01042	0.63	-0.6
1,138,838	-		CCNA_01042	0.63	-0.2
1,138,838	-		CCNA_01042	0.63	-1.0
1,138,891	+		CCNA_01042	0.65	+0.4
1,138,891	+		CCNA_01042	0.65	-2.4
1,138,899	-		CCNA_01042	0.65	-1.4
1,138,939	+		CCNA_01042	0.67	-0.2
1,138,952	-		CCNA_01042	0.68	-1.1
1,138,952	-		CCNA_01042	0.68	+2.4
1,138,952	-		CCNA_01042	0.68	-0.1
1,138,975	-		CCNA_01042	0.68	-0.2
1,138,988	-		CCNA_01042	0.69	+0.1
1,138,999	-		CCNA_01042	0.69	+0.4
1,139,028	+		CCNA_01042	0.71	+1.1
1,139,089	+		CCNA_01042	0.73	+0.3
1,139,097	-		CCNA_01042	0.73	-0.4
1,139,161	-		CCNA_01042	0.76	-0.1
1,139,227	+		CCNA_01042	0.79	+0.6
1,139,227	+		CCNA_01042	0.79	-1.0
1,139,235	-		CCNA_01042	0.79	+0.4
1,139,235	-		CCNA_01042	0.79	-0.9
1,139,351	+		CCNA_01042	0.83	-0.6
1,139,354	-		CCNA_01042	0.84	+0.4
1,139,359	-		CCNA_01042	0.84	+0.4
1,139,362	-		CCNA_01042	0.84	-0.5
1,139,368	+		CCNA_01042	0.84	-2.9
1,139,376	-		CCNA_01042	0.84	+0.2
1,139,382	+		CCNA_01042	0.85	-1.0
1,139,382	+		CCNA_01042	0.85	-0.9
1,139,390	-		CCNA_01042	0.85	-0.1
1,139,390	-		CCNA_01042	0.85	+0.1
1,139,390	-		CCNA_01042	0.85	-1.8
1,139,450	-		CCNA_01042	0.87	-1.5
1,139,493	+		CCNA_01042	0.89	+1.6
1,139,506	+		CCNA_01042	0.90	-0.2
1,139,506	+		CCNA_01042	0.90	-1.0
1,139,521	+				+0.6
1,139,539	+				+0.2
1,139,627	-				-0.1
1,139,641	-				+0.0
1,139,671	+				-1.3
1,139,673	+				-1.6
1,139,679	-				-1.2
1,139,680	+				-0.5
1,139,681	-				+0.8
1,139,688	-				+0.7
1,139,690	+				-0.9
1,139,692	+				-2.0
1,139,694	-				+1.6
1,139,696	+				-1.1
1,139,696	+				-0.2
1,139,696	+				-1.6
1,139,704	-				+0.3
1,139,707	+				+0.2
1,139,738	+				-0.2
1,139,750	-				-0.3
1,139,864	-		CCNA_01043	0.56	-2.4
1,139,880	-		CCNA_01043	0.65	-0.2
1,139,880	-		CCNA_01043	0.65	-1.0
1,139,894	+		CCNA_01043	0.73	-0.9
1,139,915	-		CCNA_01043	0.84	-1.7
1,140,012	-				-1.0
1,140,078	+				-2.2
1,140,126	+				-1.3
1,140,148	+				-0.5
1,140,149	-				+0.6
1,140,162	+				-0.7
1,140,169	-				+0.2
1,140,170	-				-3.9
1,140,190	-		CCNA_01044	0.10	-0.5
1,140,218	-		CCNA_01044	0.15	-0.3
1,140,231	-		CCNA_01044	0.17	-0.4
1,140,240	+		CCNA_01044	0.18	+0.2
1,140,271	-		CCNA_01044	0.23	-1.9
1,140,317	-		CCNA_01044	0.30	-0.5
1,140,339	+		CCNA_01044	0.34	-0.8
1,140,339	+		CCNA_01044	0.34	-0.8
1,140,339	+		CCNA_01044	0.34	-0.6
1,140,339	+		CCNA_01044	0.34	+1.2
1,140,339	+		CCNA_01044	0.34	-0.5
1,140,339	+		CCNA_01044	0.34	-1.8
1,140,339	+		CCNA_01044	0.34	+0.2
1,140,339	+		CCNA_01044	0.34	+0.4
1,140,347	-		CCNA_01044	0.35	+0.2
1,140,347	-		CCNA_01044	0.35	-1.0
1,140,362	-		CCNA_01044	0.38	-2.9
1,140,405	+		CCNA_01044	0.44	-2.3
1,140,405	+		CCNA_01044	0.44	-0.7
1,140,410	+		CCNA_01044	0.45	-0.0
1,140,410	+		CCNA_01044	0.45	+0.5
1,140,410	+		CCNA_01044	0.45	-0.3
1,140,415	+		CCNA_01044	0.46	-0.2
1,140,415	+		CCNA_01044	0.46	-0.8
1,140,423	-		CCNA_01044	0.47	+1.0
1,140,428	-		CCNA_01044	0.48	-2.9
1,140,446	+		CCNA_01044	0.51	-0.0
1,140,448	+		CCNA_01044	0.51	-0.7
1,140,471	-		CCNA_01044	0.55	+0.4
1,140,471	-		CCNA_01044	0.55	-0.3
1,140,514	+		CCNA_01044	0.62	-0.6
1,140,534	+		CCNA_01044	0.65	+3.3
1,140,534	+		CCNA_01044	0.65	+2.7
1,140,534	+		CCNA_01044	0.65	+3.2
1,140,534	+		CCNA_01044	0.65	+3.3
1,140,534	+		CCNA_01044	0.65	+3.5
1,140,534	+		CCNA_01044	0.65	+3.4
1,140,534	+		CCNA_01044	0.65	+3.2
1,140,534	+		CCNA_01044	0.65	+3.2
1,140,542	-		CCNA_01044	0.66	-0.4
1,140,542	-		CCNA_01044	0.66	-1.3
1,140,542	-		CCNA_01044	0.66	-2.5
1,140,549	-		CCNA_01044	0.67	-0.2
1,140,582	+		CCNA_01044	0.72	-1.1
1,140,590	-		CCNA_01044	0.74	-0.2
1,140,590	-		CCNA_01044	0.74	-0.8
1,140,590	-		CCNA_01044	0.74	-0.7
1,140,590	-		CCNA_01044	0.74	+0.9
1,140,597	-		CCNA_01044	0.75	+0.7
1,140,633	+		CCNA_01044	0.80	-1.5
1,140,680	+		CCNA_01044	0.88	+1.7
1,140,680	+		CCNA_01044	0.88	-1.2
1,140,714	+				+0.4
1,140,741	+				+0.2
1,140,749	-				+0.1
1,140,750	-				+0.7
1,140,776	-				-0.8
1,140,787	+		CCNA_01045	0.11	+0.0
1,140,787	+		CCNA_01045	0.11	+1.3
1,140,865	+		CCNA_01045	0.34	-0.6
1,140,900	+		CCNA_01045	0.44	-1.3
1,140,900	+		CCNA_01045	0.44	-1.8
1,140,900	+		CCNA_01045	0.44	+0.0
1,140,900	+		CCNA_01045	0.44	-0.4
1,140,903	-		CCNA_01045	0.45	+0.4
1,140,908	-		CCNA_01045	0.46	+0.6
1,140,908	-		CCNA_01045	0.46	-0.2
1,140,908	-		CCNA_01045	0.46	-0.0
1,140,936	-		CCNA_01045	0.54	+1.0
1,140,936	-		CCNA_01045	0.54	-0.2