Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00759

Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00757 and CCNA_00758 are separated by 120 nucleotidesCCNA_00758 and CCNA_00759 are separated by 199 nucleotidesCCNA_00759 and CCNA_00760 are separated by 134 nucleotides CCNA_00757: CCNA_00757 - lysyl-tRNA synthetase, at 814,256 to 815,314 _00757 CCNA_00758: CCNA_00758 - translation elongation factor P EF-P, at 815,435 to 816,001 _00758 CCNA_00759: CCNA_00759 - TonB-dependent receptor, at 816,201 to 818,675 _00759 CCNA_00760: CCNA_00760 - two component sensor histidine kinase, at 818,810 to 820,510 _00760 Position (kb) 816 817 818 819Strain fitness (log2 ratio) -2 -1 0 1 2 3at 815.202 kb on - strand, within CCNA_00757at 815.202 kb on - strand, within CCNA_00757at 815.259 kb on + strandat 815.298 kb on + strandat 815.301 kb on - strandat 815.309 kb on + strandat 815.312 kb on - strandat 815.322 kb on + strandat 815.372 kb on + strandat 815.374 kb on + strandat 815.380 kb on - strandat 815.415 kb on + strandat 815.415 kb on + strandat 815.425 kb on + strandat 815.577 kb on + strand, within CCNA_00758at 815.995 kb on + strandat 815.995 kb on + strandat 815.995 kb on + strandat 815.995 kb on + strandat 815.995 kb on + strandat 815.995 kb on + strandat 816.022 kb on + strandat 816.022 kb on + strandat 816.022 kb on + strandat 816.106 kb on + strandat 816.119 kb on + strandat 816.190 kb on + strandat 816.198 kb on - strandat 816.198 kb on - strandat 816.199 kb on + strandat 816.199 kb on + strandat 816.289 kb on + strandat 816.314 kb on + strandat 816.343 kb on + strandat 816.343 kb on + strandat 816.343 kb on + strandat 816.343 kb on + strandat 816.343 kb on - strandat 816.401 kb on + strandat 816.409 kb on + strandat 816.463 kb on + strand, within CCNA_00759at 816.471 kb on - strand, within CCNA_00759at 816.476 kb on - strand, within CCNA_00759at 816.501 kb on + strand, within CCNA_00759at 816.501 kb on + strand, within CCNA_00759at 816.501 kb on + strand, within CCNA_00759at 816.509 kb on - strand, within CCNA_00759at 816.520 kb on - strand, within CCNA_00759at 816.570 kb on + strand, within CCNA_00759at 816.572 kb on - strand, within CCNA_00759at 816.572 kb on - strand, within CCNA_00759at 816.578 kb on - strand, within CCNA_00759at 816.578 kb on - strand, within CCNA_00759at 816.587 kb on + strand, within CCNA_00759at 816.590 kb on - strand, within CCNA_00759at 816.592 kb on + strand, within CCNA_00759at 816.595 kb on + strand, within CCNA_00759at 816.600 kb on + strand, within CCNA_00759at 816.605 kb on + strand, within CCNA_00759at 816.615 kb on + strand, within CCNA_00759at 816.665 kb on + strand, within CCNA_00759at 816.665 kb on + strand, within CCNA_00759at 816.665 kb on + strand, within CCNA_00759at 816.689 kb on + strand, within CCNA_00759at 816.697 kb on - strand, within CCNA_00759at 816.718 kb on + strand, within CCNA_00759at 816.722 kb on - strand, within CCNA_00759at 816.726 kb on - strand, within CCNA_00759at 816.731 kb on - strand, within CCNA_00759at 816.745 kb on - strand, within CCNA_00759at 816.759 kb on - strand, within CCNA_00759at 816.810 kb on - strand, within CCNA_00759at 816.815 kb on - strand, within CCNA_00759at 816.877 kb on + strand, within CCNA_00759at 816.877 kb on - strand, within CCNA_00759at 816.877 kb on - strand, within CCNA_00759at 816.904 kb on + strand, within CCNA_00759at 816.904 kb on + strand, within CCNA_00759at 816.904 kb on + strand, within CCNA_00759at 816.904 kb on + strand, within CCNA_00759at 816.912 kb on - strand, within CCNA_00759at 816.914 kb on + strand, within CCNA_00759at 816.914 kb on + strand, within CCNA_00759at 816.914 kb on + strand, within CCNA_00759at 816.914 kb on + strand, within CCNA_00759at 816.922 kb on - strand, within CCNA_00759at 816.922 kb on - strand, within CCNA_00759at 816.922 kb on - strand, within CCNA_00759at 816.922 kb on - strand, within CCNA_00759at 816.922 kb on - strand, within CCNA_00759at 816.978 kb on + strand, within CCNA_00759at 817.022 kb on - strand, within CCNA_00759at 817.082 kb on + strand, within CCNA_00759at 817.087 kb on + strand, within CCNA_00759at 817.131 kb on - strand, within CCNA_00759at 817.144 kb on + strand, within CCNA_00759at 817.144 kb on + strand, within CCNA_00759at 817.186 kb on - strand, within CCNA_00759at 817.196 kb on - strand, within CCNA_00759at 817.231 kb on - strandat 817.237 kb on + strand, within CCNA_00759at 817.246 kb on - strand, within CCNA_00759at 817.246 kb on - strand, within CCNA_00759at 817.269 kb on - strand, within CCNA_00759at 817.291 kb on - strand, within CCNA_00759at 817.335 kb on - strand, within CCNA_00759at 817.340 kb on + strand, within CCNA_00759at 817.340 kb on + strand, within CCNA_00759at 817.353 kb on + strand, within CCNA_00759at 817.361 kb on - strand, within CCNA_00759at 817.361 kb on - strand, within CCNA_00759at 817.381 kb on - strand, within CCNA_00759at 817.388 kb on - strand, within CCNA_00759at 817.390 kb on + strand, within CCNA_00759at 817.390 kb on + strand, within CCNA_00759at 817.390 kb on + strand, within CCNA_00759at 817.390 kb on + strand, within CCNA_00759at 817.398 kb on - strand, within CCNA_00759at 817.426 kb on + strand, within CCNA_00759at 817.436 kb on + strand, within CCNA_00759at 817.436 kb on + strand, within CCNA_00759at 817.439 kb on - strand, within CCNA_00759at 817.439 kb on - strand, within CCNA_00759at 817.455 kb on + strand, within CCNA_00759at 817.464 kb on + strand, within CCNA_00759at 817.464 kb on + strand, within CCNA_00759at 817.472 kb on + strand, within CCNA_00759at 817.472 kb on + strand, within CCNA_00759at 817.472 kb on + strand, within CCNA_00759at 817.480 kb on - strand, within CCNA_00759at 817.480 kb on - strand, within CCNA_00759at 817.480 kb on - strand, within CCNA_00759at 817.504 kb on + strand, within CCNA_00759at 817.509 kb on + strand, within CCNA_00759at 817.509 kb on + strand, within CCNA_00759at 817.509 kb on + strand, within CCNA_00759at 817.512 kb on - strand, within CCNA_00759at 817.514 kb on + strand, within CCNA_00759at 817.516 kb on + strand, within CCNA_00759at 817.517 kb on - strand, within CCNA_00759at 817.579 kb on - strand, within CCNA_00759at 817.638 kb on + strand, within CCNA_00759at 817.648 kb on + strand, within CCNA_00759at 817.653 kb on + strand, within CCNA_00759at 817.653 kb on + strand, within CCNA_00759at 817.653 kb on + strand, within CCNA_00759at 817.653 kb on + strand, within CCNA_00759at 817.653 kb on + strand, within CCNA_00759at 817.656 kb on - strand, within CCNA_00759at 817.656 kb on - strand, within CCNA_00759at 817.661 kb on - strand, within CCNA_00759at 817.696 kb on + strand, within CCNA_00759at 817.738 kb on + strand, within CCNA_00759at 817.746 kb on - strand, within CCNA_00759at 817.820 kb on - strand, within CCNA_00759at 817.824 kb on + strand, within CCNA_00759at 817.873 kb on + strand, within CCNA_00759at 817.923 kb on + strand, within CCNA_00759at 817.935 kb on + strand, within CCNA_00759at 817.955 kb on + strand, within CCNA_00759at 817.955 kb on + strand, within CCNA_00759at 817.955 kb on + strand, within CCNA_00759at 817.955 kb on + strand, within CCNA_00759at 817.955 kb on + strand, within CCNA_00759at 817.956 kb on + strand, within CCNA_00759at 817.962 kb on - strand, within CCNA_00759at 817.963 kb on - strand, within CCNA_00759at 817.975 kb on - strand, within CCNA_00759at 818.080 kb on + strand, within CCNA_00759at 818.090 kb on + strand, within CCNA_00759at 818.100 kb on + strand, within CCNA_00759at 818.111 kb on + strand, within CCNA_00759at 818.119 kb on - strand, within CCNA_00759at 818.119 kb on - strand, within CCNA_00759at 818.123 kb on + strand, within CCNA_00759at 818.209 kb on + strand, within CCNA_00759at 818.235 kb on + strand, within CCNA_00759at 818.260 kb on + strand, within CCNA_00759at 818.261 kb on - strand, within CCNA_00759at 818.281 kb on + strand, within CCNA_00759at 818.288 kb on - strand, within CCNA_00759at 818.318 kb on - strand, within CCNA_00759at 818.322 kb on + strand, within CCNA_00759at 818.382 kb on - strand, within CCNA_00759at 818.426 kb on - strand, within CCNA_00759at 818.436 kb on - strandat 818.535 kb on + strandat 818.538 kb on - strandat 818.545 kb on + strandat 818.545 kb on + strandat 818.599 kb on + strandat 818.621 kb on + strandat 818.621 kb on - strandat 818.642 kb on - strandat 818.650 kb on + strandat 818.677 kb on + strandat 818.682 kb on + strandat 818.682 kb on + strandat 818.727 kb on - strandat 818.727 kb on - strandat 818.737 kb on - strandat 818.759 kb on - strandat 818.776 kb on + strandat 818.776 kb on + strandat 818.828 kb on + strandat 818.835 kb on + strandat 818.843 kb on - strandat 818.958 kb on - strandat 818.960 kb on + strandat 818.977 kb on + strandat 818.985 kb on - strand, within CCNA_00760at 818.985 kb on - strand, within CCNA_00760at 819.031 kb on - strand, within CCNA_00760at 819.041 kb on - strand, within CCNA_00760at 819.058 kb on + strand, within CCNA_00760at 819.058 kb on + strand, within CCNA_00760at 819.081 kb on - strand, within CCNA_00760at 819.123 kb on - strand, within CCNA_00760at 819.150 kb on - strand, within CCNA_00760at 819.166 kb on + strand, within CCNA_00760at 819.191 kb on - strand, within CCNA_00760at 819.241 kb on - strand, within CCNA_00760at 819.252 kb on + strand, within CCNA_00760at 819.257 kb on + strand, within CCNA_00760at 819.259 kb on - strand, within CCNA_00760at 819.260 kb on - strand, within CCNA_00760at 819.278 kb on - strand, within CCNA_00760at 819.294 kb on + strand, within CCNA_00760at 819.302 kb on - strand, within CCNA_00760at 819.302 kb on - strand, within CCNA_00760at 819.324 kb on - strand, within CCNA_00760at 819.324 kb on - strand, within CCNA_00760at 819.328 kb on + strand, within CCNA_00760at 819.328 kb on + strandat 819.328 kb on + strand, within CCNA_00760at 819.336 kb on - strand, within CCNA_00760at 819.362 kb on + strand, within CCNA_00760at 819.376 kb on + strand, within CCNA_00760at 819.392 kb on + strand, within CCNA_00760at 819.406 kb on - strand, within CCNA_00760at 819.416 kb on - strand, within CCNA_00760at 819.419 kb on + strand, within CCNA_00760at 819.419 kb on + strand, within CCNA_00760at 819.419 kb on + strand, within CCNA_00760at 819.419 kb on + strand, within CCNA_00760at 819.419 kb on + strand, within CCNA_00760at 819.508 kb on - strand, within CCNA_00760at 819.508 kb on - strand, within CCNA_00760at 819.644 kb on + strand, within CCNA_00760at 819.646 kb on - strand, within CCNA_00760at 819.649 kb on + strand, within CCNA_00760at 819.652 kb on - strand, within CCNA_00760at 819.665 kb on - strand, within CCNA_00760at 819.666 kb on + strand, within CCNA_00760

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol%
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815,202 - CCNA_00757 0.89 -0.2
815,202 - CCNA_00757 0.89 -0.5
815,259 + +0.9
815,298 + -1.7
815,301 - +1.5
815,309 + -1.3
815,312 - +0.5
815,322 + +0.8
815,372 + +2.1
815,374 + +1.6
815,380 - -0.8
815,415 + +3.4
815,415 + +2.0
815,425 + +0.8
815,577 + CCNA_00758 0.25 +2.2
815,995 + +3.1
815,995 + +2.9
815,995 + +3.3
815,995 + +2.8
815,995 + +2.9
815,995 + +3.1
816,022 + +3.2
816,022 + +3.3
816,022 + +3.4
816,106 + +1.2
816,119 + +0.8
816,190 + -1.5
816,198 - +0.9
816,198 - +1.1
816,199 + +1.3
816,199 + -1.0
816,289 + -1.1
816,314 + -1.9
816,343 + +0.3
816,343 + +0.8
816,343 + -1.6
816,343 + -1.7
816,343 - +1.6
816,401 + -0.6
816,409 + -0.0
816,463 + CCNA_00759 0.11 +0.4
816,471 - CCNA_00759 0.11 -0.0
816,476 - CCNA_00759 0.11 -0.3
816,501 + CCNA_00759 0.12 -2.3
816,501 + CCNA_00759 0.12 -2.2
816,501 + CCNA_00759 0.12 +1.2
816,509 - CCNA_00759 0.12 +0.6
816,520 - CCNA_00759 0.13 -1.5
816,570 + CCNA_00759 0.15 +0.8
816,572 - CCNA_00759 0.15 +0.5
816,572 - CCNA_00759 0.15 -1.4
816,578 - CCNA_00759 0.15 -0.7
816,578 - CCNA_00759 0.15 +0.2
816,587 + CCNA_00759 0.16 +0.5
816,590 - CCNA_00759 0.16 -0.6
816,592 + CCNA_00759 0.16 -0.3
816,595 + CCNA_00759 0.16 +1.0
816,600 + CCNA_00759 0.16 +0.1
816,605 + CCNA_00759 0.16 +0.2
816,615 + CCNA_00759 0.17 -0.1
816,665 + CCNA_00759 0.19 +1.8
816,665 + CCNA_00759 0.19 +0.8
816,665 + CCNA_00759 0.19 +0.4
816,689 + CCNA_00759 0.20 -1.3
816,697 - CCNA_00759 0.20 -1.1
816,718 + CCNA_00759 0.21 -1.5
816,722 - CCNA_00759 0.21 +0.5
816,726 - CCNA_00759 0.21 -0.5
816,731 - CCNA_00759 0.21 -0.1
816,745 - CCNA_00759 0.22 +0.6
816,759 - CCNA_00759 0.23 -1.2
816,810 - CCNA_00759 0.25 -1.6
816,815 - CCNA_00759 0.25 -0.5
816,877 + CCNA_00759 0.27 +0.9
816,877 - CCNA_00759 0.27 -1.3
816,877 - CCNA_00759 0.27 -1.0
816,904 + CCNA_00759 0.28 +0.2
816,904 + CCNA_00759 0.28 -1.6
816,904 + CCNA_00759 0.28 -0.2
816,904 + CCNA_00759 0.28 -1.6
816,912 - CCNA_00759 0.29 -1.4
816,914 + CCNA_00759 0.29 -0.0
816,914 + CCNA_00759 0.29 -0.1
816,914 + CCNA_00759 0.29 +0.6
816,914 + CCNA_00759 0.29 +0.3
816,922 - CCNA_00759 0.29 -0.2
816,922 - CCNA_00759 0.29 +0.5
816,922 - CCNA_00759 0.29 -0.1
816,922 - CCNA_00759 0.29 +0.3
816,922 - CCNA_00759 0.29 +0.5
816,978 + CCNA_00759 0.31 -0.8
817,022 - CCNA_00759 0.33 +0.6
817,082 + CCNA_00759 0.36 +1.5
817,087 + CCNA_00759 0.36 -1.0
817,131 - CCNA_00759 0.38 +0.7
817,144 + CCNA_00759 0.38 +2.2
817,144 + CCNA_00759 0.38 -0.5
817,186 - CCNA_00759 0.40 -1.1
817,196 - CCNA_00759 0.40 -0.1
817,231 - +2.6
817,237 + CCNA_00759 0.42 +0.7
817,246 - CCNA_00759 0.42 -0.2
817,246 - CCNA_00759 0.42 -0.4
817,269 - CCNA_00759 0.43 -0.4
817,291 - CCNA_00759 0.44 -0.6
817,335 - CCNA_00759 0.46 +0.5
817,340 + CCNA_00759 0.46 -0.5
817,340 + CCNA_00759 0.46 -1.5
817,353 + CCNA_00759 0.47 -0.8
817,361 - CCNA_00759 0.47 -1.6
817,361 - CCNA_00759 0.47 -0.8
817,381 - CCNA_00759 0.48 -0.3
817,388 - CCNA_00759 0.48 -0.4
817,390 + CCNA_00759 0.48 -0.1
817,390 + CCNA_00759 0.48 -0.2
817,390 + CCNA_00759 0.48 -0.5
817,390 + CCNA_00759 0.48 -0.2
817,398 - CCNA_00759 0.48 -1.1
817,426 + CCNA_00759 0.49 +0.1
817,436 + CCNA_00759 0.50 -0.3
817,436 + CCNA_00759 0.50 -1.3
817,439 - CCNA_00759 0.50 -0.3
817,439 - CCNA_00759 0.50 +1.0
817,455 + CCNA_00759 0.51 +0.1
817,464 + CCNA_00759 0.51 -1.3
817,464 + CCNA_00759 0.51 +1.4
817,472 + CCNA_00759 0.51 -1.7
817,472 + CCNA_00759 0.51 +0.6
817,472 + CCNA_00759 0.51 +0.5
817,480 - CCNA_00759 0.52 +0.5
817,480 - CCNA_00759 0.52 -2.1
817,480 - CCNA_00759 0.52 -0.2
817,504 + CCNA_00759 0.53 +3.5
817,509 + CCNA_00759 0.53 +0.1
817,509 + CCNA_00759 0.53 +0.7
817,509 + CCNA_00759 0.53 -0.5
817,512 - CCNA_00759 0.53 -1.2
817,514 + CCNA_00759 0.53 -0.7
817,516 + CCNA_00759 0.53 -1.7
817,517 - CCNA_00759 0.53 +0.6
817,579 - CCNA_00759 0.56 +0.3
817,638 + CCNA_00759 0.58 -0.7
817,648 + CCNA_00759 0.58 -0.9
817,653 + CCNA_00759 0.59 +0.3
817,653 + CCNA_00759 0.59 +0.3
817,653 + CCNA_00759 0.59 +0.4
817,653 + CCNA_00759 0.59 -0.1
817,653 + CCNA_00759 0.59 -1.5
817,656 - CCNA_00759 0.59 +0.7
817,656 - CCNA_00759 0.59 -0.2
817,661 - CCNA_00759 0.59 -1.0
817,696 + CCNA_00759 0.60 +0.8
817,738 + CCNA_00759 0.62 -1.3
817,746 - CCNA_00759 0.62 -0.9
817,820 - CCNA_00759 0.65 -1.5
817,824 + CCNA_00759 0.66 -0.7
817,873 + CCNA_00759 0.68 -0.3
817,923 + CCNA_00759 0.70 -1.2
817,935 + CCNA_00759 0.70 -0.1
817,955 + CCNA_00759 0.71 +0.6
817,955 + CCNA_00759 0.71 -1.0
817,955 + CCNA_00759 0.71 -2.0
817,955 + CCNA_00759 0.71 -0.8
817,955 + CCNA_00759 0.71 +0.3
817,956 + CCNA_00759 0.71 -0.8
817,962 - CCNA_00759 0.71 -0.3
817,963 - CCNA_00759 0.71 -0.7
817,975 - CCNA_00759 0.72 +0.2
818,080 + CCNA_00759 0.76 +2.6
818,090 + CCNA_00759 0.76 -0.7
818,100 + CCNA_00759 0.77 -1.0
818,111 + CCNA_00759 0.77 -0.7
818,119 - CCNA_00759 0.77 -1.1
818,119 - CCNA_00759 0.77 -0.2
818,123 + CCNA_00759 0.78 +2.3
818,209 + CCNA_00759 0.81 +0.1
818,235 + CCNA_00759 0.82 +1.4
818,260 + CCNA_00759 0.83 -0.5
818,261 - CCNA_00759 0.83 +0.2
818,281 + CCNA_00759 0.84 +0.5
818,288 - CCNA_00759 0.84 +0.5
818,318 - CCNA_00759 0.86 -1.6
818,322 + CCNA_00759 0.86 +0.2
818,382 - CCNA_00759 0.88 +0.9
818,426 - CCNA_00759 0.90 +1.2
818,436 - -1.1
818,535 + +0.3
818,538 - +1.5
818,545 + +0.4
818,545 + +0.0
818,599 + -0.0
818,621 + -0.5
818,621 - -0.7
818,642 - -0.6
818,650 + -0.5
818,677 + -0.9
818,682 + -1.1
818,682 + -0.9
818,727 - -1.1
818,727 - +0.7
818,737 - -0.8
818,759 - +0.5
818,776 + +0.3
818,776 + -1.4
818,828 + +0.6
818,835 + -0.2
818,843 - -0.3
818,958 - -0.9
818,960 + +0.2
818,977 + +0.1
818,985 - CCNA_00760 0.10 +0.1
818,985 - CCNA_00760 0.10 +1.2
819,031 - CCNA_00760 0.13 -0.8
819,041 - CCNA_00760 0.14 +1.3
819,058 + CCNA_00760 0.15 -0.7
819,058 + CCNA_00760 0.15 +0.8
819,081 - CCNA_00760 0.16 +0.2
819,123 - CCNA_00760 0.18 -1.4
819,150 - CCNA_00760 0.20 +1.6
819,166 + CCNA_00760 0.21 -0.4
819,191 - CCNA_00760 0.22 +1.1
819,241 - CCNA_00760 0.25 +0.4
819,252 + CCNA_00760 0.26 -0.1
819,257 + CCNA_00760 0.26 -0.6
819,259 - CCNA_00760 0.26 +0.7
819,260 - CCNA_00760 0.26 -0.1
819,278 - CCNA_00760 0.28 +1.0
819,294 + CCNA_00760 0.28 -1.7
819,302 - CCNA_00760 0.29 +1.2
819,302 - CCNA_00760 0.29 +0.8
819,324 - CCNA_00760 0.30 +0.7
819,324 - CCNA_00760 0.30 +1.8
819,328 + CCNA_00760 0.30 +0.8
819,328 + +1.8
819,328 + CCNA_00760 0.30 +0.8
819,336 - CCNA_00760 0.31 +1.6
819,362 + CCNA_00760 0.32 +2.2
819,376 + CCNA_00760 0.33 +0.9
819,392 + CCNA_00760 0.34 -0.5
819,406 - CCNA_00760 0.35 +1.1
819,416 - CCNA_00760 0.36 +1.5
819,419 + CCNA_00760 0.36 +0.5
819,419 + CCNA_00760 0.36 +1.2
819,419 + CCNA_00760 0.36 -0.1
819,419 + CCNA_00760 0.36 -0.7
819,419 + CCNA_00760 0.36 +1.3
819,508 - CCNA_00760 0.41 +1.2
819,508 - CCNA_00760 0.41 +0.8
819,644 + CCNA_00760 0.49 -1.5
819,646 - CCNA_00760 0.49 +1.0
819,649 + CCNA_00760 0.49 -0.6
819,652 - CCNA_00760 0.50 +0.6
819,665 - CCNA_00760 0.50 +0.9
819,666 + CCNA_00760 0.50 -0.4

Or see this region's nucleotide sequence