Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00710

Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00708 and CCNA_00709 are separated by 107 nucleotidesCCNA_00709 and CCNA_00710 are separated by 120 nucleotidesCCNA_00710 and CCNA_00711 are separated by 142 nucleotides CCNA_00708: CCNA_00708 - cobaltochelatase cobT subunit, at 765,182 to 767,110 _00708 CCNA_00709: CCNA_00709 - hypothetical protein, at 767,218 to 767,400 _00709 CCNA_00710: CCNA_00710 - alpha/beta hydrolase family protein, at 767,521 to 768,690 _00710 CCNA_00711: CCNA_00711 - hypothetical protein, at 768,833 to 769,933 _00711 Position (kb) 767 768 769Strain fitness (log2 ratio) -2 -1 0 1 2 3at 766.556 kb on + strand, within CCNA_00708at 766.564 kb on - strand, within CCNA_00708at 766.564 kb on - strand, within CCNA_00708at 766.564 kb on - strand, within CCNA_00708at 766.564 kb on - strand, within CCNA_00708at 766.580 kb on - strand, within CCNA_00708at 766.697 kb on - strand, within CCNA_00708at 766.718 kb on - strand, within CCNA_00708at 766.851 kb on - strand, within CCNA_00708at 766.873 kb on - strand, within CCNA_00708at 767.067 kb on - strandat 767.078 kb on - strandat 767.078 kb on - strandat 767.119 kb on + strandat 767.209 kb on - strandat 767.220 kb on + strandat 767.246 kb on + strand, within CCNA_00709at 767.264 kb on - strand, within CCNA_00709at 767.296 kb on + strand, within CCNA_00709at 767.322 kb on - strand, within CCNA_00709at 767.339 kb on + strand, within CCNA_00709at 767.371 kb on + strand, within CCNA_00709at 767.371 kb on + strand, within CCNA_00709at 767.371 kb on + strand, within CCNA_00709at 767.371 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.373 kb on + strand, within CCNA_00709at 767.379 kb on - strand, within CCNA_00709at 767.379 kb on - strand, within CCNA_00709at 767.381 kb on - strand, within CCNA_00709at 767.461 kb on - strandat 767.496 kb on - strandat 767.531 kb on + strandat 767.537 kb on + strandat 767.539 kb on - strandat 767.545 kb on - strandat 767.545 kb on - strandat 767.576 kb on - strandat 767.581 kb on - strandat 767.583 kb on + strandat 767.591 kb on - strandat 767.598 kb on + strandat 767.599 kb on + strandat 767.606 kb on + strandat 767.621 kb on - strandat 767.645 kb on + strand, within CCNA_00710at 767.650 kb on + strand, within CCNA_00710at 767.653 kb on - strand, within CCNA_00710at 767.658 kb on - strand, within CCNA_00710at 767.689 kb on - strand, within CCNA_00710at 767.697 kb on + strand, within CCNA_00710at 767.713 kb on + strand, within CCNA_00710at 767.716 kb on - strand, within CCNA_00710at 767.773 kb on + strand, within CCNA_00710at 767.773 kb on + strand, within CCNA_00710at 767.801 kb on - strand, within CCNA_00710at 767.838 kb on + strand, within CCNA_00710at 767.843 kb on + strand, within CCNA_00710at 767.851 kb on - strand, within CCNA_00710at 767.851 kb on - strand, within CCNA_00710at 767.869 kb on + strand, within CCNA_00710at 767.870 kb on - strand, within CCNA_00710at 767.872 kb on - strand, within CCNA_00710at 767.872 kb on - strand, within CCNA_00710at 767.872 kb on - strand, within CCNA_00710at 767.942 kb on - strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.979 kb on + strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 767.987 kb on - strand, within CCNA_00710at 768.001 kb on + strand, within CCNA_00710at 768.040 kb on - strand, within CCNA_00710at 768.083 kb on + strand, within CCNA_00710at 768.091 kb on - strand, within CCNA_00710at 768.101 kb on - strand, within CCNA_00710at 768.124 kb on + strand, within CCNA_00710at 768.158 kb on - strand, within CCNA_00710at 768.160 kb on - strand, within CCNA_00710at 768.211 kb on + strand, within CCNA_00710at 768.214 kb on - strand, within CCNA_00710at 768.238 kb on + strand, within CCNA_00710at 768.238 kb on + strand, within CCNA_00710at 768.241 kb on - strand, within CCNA_00710at 768.246 kb on - strand, within CCNA_00710at 768.273 kb on + strand, within CCNA_00710at 768.310 kb on + strand, within CCNA_00710at 768.342 kb on - strand, within CCNA_00710at 768.342 kb on - strand, within CCNA_00710at 768.347 kb on - strand, within CCNA_00710at 768.418 kb on + strand, within CCNA_00710at 768.426 kb on - strand, within CCNA_00710at 768.448 kb on + strand, within CCNA_00710at 768.456 kb on - strand, within CCNA_00710at 768.456 kb on - strand, within CCNA_00710at 768.456 kb on - strand, within CCNA_00710at 768.456 kb on - strand, within CCNA_00710at 768.456 kb on - strand, within CCNA_00710at 768.470 kb on + strand, within CCNA_00710at 768.478 kb on - strand, within CCNA_00710at 768.478 kb on - strand, within CCNA_00710at 768.478 kb on - strand, within CCNA_00710at 768.478 kb on - strand, within CCNA_00710at 768.478 kb on - strand, within CCNA_00710at 768.478 kb on - strand, within CCNA_00710at 768.486 kb on - strand, within CCNA_00710at 768.487 kb on - strand, within CCNA_00710at 768.493 kb on - strand, within CCNA_00710at 768.515 kb on + strand, within CCNA_00710at 768.528 kb on - strand, within CCNA_00710at 768.541 kb on - strand, within CCNA_00710at 768.562 kb on - strand, within CCNA_00710at 768.603 kb on + strandat 768.645 kb on + strandat 768.645 kb on + strandat 768.663 kb on + strandat 768.762 kb on + strandat 768.770 kb on - strandat 768.821 kb on - strandat 768.830 kb on + strandat 768.830 kb on + strandat 768.840 kb on + strandat 768.904 kb on + strandat 768.905 kb on + strandat 768.910 kb on + strandat 768.947 kb on + strand, within CCNA_00711at 768.947 kb on + strand, within CCNA_00711at 768.963 kb on + strandat 768.963 kb on + strandat 768.963 kb on + strand, within CCNA_00711at 768.971 kb on - strand, within CCNA_00711at 768.976 kb on + strand, within CCNA_00711at 768.993 kb on - strand, within CCNA_00711at 769.027 kb on + strand, within CCNA_00711at 769.027 kb on + strand, within CCNA_00711at 769.035 kb on - strand, within CCNA_00711at 769.047 kb on + strand, within CCNA_00711at 769.049 kb on + strand, within CCNA_00711at 769.050 kb on - strand, within CCNA_00711at 769.057 kb on - strand, within CCNA_00711at 769.057 kb on - strand, within CCNA_00711at 769.059 kb on + strand, within CCNA_00711at 769.119 kb on + strand, within CCNA_00711at 769.162 kb on - strand, within CCNA_00711at 769.165 kb on + strand, within CCNA_00711at 769.165 kb on + strandat 769.165 kb on + strand, within CCNA_00711at 769.165 kb on + strand, within CCNA_00711at 769.195 kb on + strand, within CCNA_00711at 769.195 kb on + strand, within CCNA_00711at 769.195 kb on + strand, within CCNA_00711at 769.195 kb on + strand, within CCNA_00711at 769.195 kb on + strand, within CCNA_00711at 769.195 kb on + strand, within CCNA_00711at 769.195 kb on + strand, within CCNA_00711at 769.195 kb on + strand, within CCNA_00711at 769.195 kb on + strand, within CCNA_00711at 769.195 kb on + strand, within CCNA_00711at 769.203 kb on - strand, within CCNA_00711at 769.203 kb on - strand, within CCNA_00711at 769.203 kb on - strand, within CCNA_00711at 769.203 kb on - strand, within CCNA_00711at 769.203 kb on - strand, within CCNA_00711at 769.225 kb on + strand, within CCNA_00711at 769.225 kb on + strand, within CCNA_00711at 769.225 kb on + strand, within CCNA_00711at 769.233 kb on - strand, within CCNA_00711at 769.233 kb on - strand, within CCNA_00711at 769.233 kb on - strand, within CCNA_00711at 769.233 kb on - strand, within CCNA_00711at 769.238 kb on - strand, within CCNA_00711at 769.244 kb on + strand, within CCNA_00711at 769.255 kb on + strand, within CCNA_00711at 769.255 kb on + strand, within CCNA_00711at 769.255 kb on + strand, within CCNA_00711at 769.255 kb on + strand, within CCNA_00711at 769.255 kb on + strand, within CCNA_00711at 769.263 kb on - strand, within CCNA_00711at 769.263 kb on - strand, within CCNA_00711at 769.263 kb on - strand, within CCNA_00711at 769.263 kb on - strand, within CCNA_00711at 769.263 kb on - strand, within CCNA_00711at 769.263 kb on - strand, within CCNA_00711at 769.263 kb on - strand, within CCNA_00711at 769.305 kb on - strand, within CCNA_00711at 769.322 kb on + strand, within CCNA_00711at 769.330 kb on + strand, within CCNA_00711at 769.345 kb on + strand, within CCNA_00711at 769.353 kb on - strand, within CCNA_00711at 769.367 kb on - strand, within CCNA_00711at 769.415 kb on + strand, within CCNA_00711at 769.451 kb on + strand, within CCNA_00711at 769.451 kb on + strand, within CCNA_00711at 769.456 kb on + strand, within CCNA_00711at 769.459 kb on - strand, within CCNA_00711at 769.461 kb on + strand, within CCNA_00711at 769.461 kb on + strand, within CCNA_00711at 769.464 kb on - strand, within CCNA_00711at 769.468 kb on + strand, within CCNA_00711at 769.468 kb on + strand, within CCNA_00711at 769.468 kb on + strand, within CCNA_00711at 769.469 kb on - strand, within CCNA_00711at 769.469 kb on - strand, within CCNA_00711at 769.469 kb on - strand, within CCNA_00711at 769.469 kb on - strand, within CCNA_00711at 769.498 kb on + strand, within CCNA_00711at 769.500 kb on + strand, within CCNA_00711at 769.500 kb on + strand, within CCNA_00711at 769.508 kb on - strand, within CCNA_00711at 769.589 kb on - strand, within CCNA_00711at 769.591 kb on + strand, within CCNA_00711at 769.591 kb on + strand, within CCNA_00711at 769.591 kb on + strand, within CCNA_00711at 769.591 kb on + strand, within CCNA_00711at 769.591 kb on + strand, within CCNA_00711at 769.599 kb on - strand, within CCNA_00711at 769.599 kb on - strand, within CCNA_00711at 769.599 kb on - strand, within CCNA_00711at 769.631 kb on - strand, within CCNA_00711at 769.652 kb on + strand, within CCNA_00711at 769.660 kb on - strand, within CCNA_00711at 769.674 kb on + strand, within CCNA_00711at 769.685 kb on - strand, within CCNA_00711

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol%
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766,556 + CCNA_00708 0.71 +1.2
766,564 - CCNA_00708 0.72 +0.6
766,564 - CCNA_00708 0.72 -1.6
766,564 - CCNA_00708 0.72 +0.4
766,564 - CCNA_00708 0.72 -1.0
766,580 - CCNA_00708 0.72 +1.4
766,697 - CCNA_00708 0.79 -0.7
766,718 - CCNA_00708 0.80 +0.2
766,851 - CCNA_00708 0.87 -1.1
766,873 - CCNA_00708 0.88 -2.0
767,067 - -0.5
767,078 - +1.7
767,078 - -0.3
767,119 + +0.5
767,209 - +0.4
767,220 + -1.3
767,246 + CCNA_00709 0.15 -0.6
767,264 - CCNA_00709 0.25 -1.8
767,296 + CCNA_00709 0.43 -0.0
767,322 - CCNA_00709 0.57 -0.7
767,339 + CCNA_00709 0.66 -0.3
767,371 + CCNA_00709 0.84 -2.7
767,371 + CCNA_00709 0.84 +1.6
767,371 + CCNA_00709 0.84 +1.0
767,371 + CCNA_00709 0.84 +1.4
767,373 + CCNA_00709 0.85 +1.1
767,373 + CCNA_00709 0.85 -0.5
767,373 + CCNA_00709 0.85 +1.1
767,373 + CCNA_00709 0.85 +1.3
767,373 + CCNA_00709 0.85 +0.8
767,373 + CCNA_00709 0.85 -0.4
767,373 + CCNA_00709 0.85 +1.3
767,373 + CCNA_00709 0.85 +0.2
767,373 + CCNA_00709 0.85 +2.0
767,373 + CCNA_00709 0.85 +0.6
767,379 - CCNA_00709 0.88 +0.6
767,379 - CCNA_00709 0.88 +0.3
767,381 - CCNA_00709 0.89 -0.9
767,461 - -0.4
767,496 - +1.0
767,531 + +1.2
767,537 + +0.4
767,539 - +0.1
767,545 - -0.2
767,545 - +0.1
767,576 - +0.6
767,581 - +0.7
767,583 + +0.6
767,591 - +1.4
767,598 + +0.1
767,599 + -1.1
767,606 + +0.1
767,621 - -0.1
767,645 + CCNA_00710 0.11 +0.2
767,650 + CCNA_00710 0.11 +1.0
767,653 - CCNA_00710 0.11 +0.2
767,658 - CCNA_00710 0.12 +0.1
767,689 - CCNA_00710 0.14 -0.6
767,697 + CCNA_00710 0.15 +3.4
767,713 + CCNA_00710 0.16 +1.9
767,716 - CCNA_00710 0.17 +0.1
767,773 + CCNA_00710 0.22 +0.8
767,773 + CCNA_00710 0.22 +0.8
767,801 - CCNA_00710 0.24 +0.5
767,838 + CCNA_00710 0.27 -0.3
767,843 + CCNA_00710 0.28 -0.8
767,851 - CCNA_00710 0.28 -1.1
767,851 - CCNA_00710 0.28 -0.3
767,869 + CCNA_00710 0.30 -0.9
767,870 - CCNA_00710 0.30 +0.2
767,872 - CCNA_00710 0.30 +0.5
767,872 - CCNA_00710 0.30 +0.6
767,872 - CCNA_00710 0.30 -0.1
767,942 - CCNA_00710 0.36 +0.7
767,979 + CCNA_00710 0.39 +1.9
767,979 + CCNA_00710 0.39 -1.5
767,979 + CCNA_00710 0.39 +0.8
767,979 + CCNA_00710 0.39 -0.2
767,979 + CCNA_00710 0.39 -0.7
767,979 + CCNA_00710 0.39 -0.4
767,979 + CCNA_00710 0.39 +1.7
767,987 - CCNA_00710 0.40 -0.7
767,987 - CCNA_00710 0.40 +0.1
767,987 - CCNA_00710 0.40 +0.5
767,987 - CCNA_00710 0.40 +0.8
767,987 - CCNA_00710 0.40 +0.5
767,987 - CCNA_00710 0.40 -0.8
768,001 + CCNA_00710 0.41 +0.9
768,040 - CCNA_00710 0.44 +1.1
768,083 + CCNA_00710 0.48 +1.1
768,091 - CCNA_00710 0.49 -0.6
768,101 - CCNA_00710 0.50 -0.1
768,124 + CCNA_00710 0.52 +0.8
768,158 - CCNA_00710 0.54 -1.5
768,160 - CCNA_00710 0.55 -1.2
768,211 + CCNA_00710 0.59 -0.8
768,214 - CCNA_00710 0.59 +0.4
768,238 + CCNA_00710 0.61 -0.1
768,238 + CCNA_00710 0.61 +0.2
768,241 - CCNA_00710 0.62 +0.5
768,246 - CCNA_00710 0.62 +0.0
768,273 + CCNA_00710 0.64 -0.3
768,310 + CCNA_00710 0.67 +1.8
768,342 - CCNA_00710 0.70 -0.2
768,342 - CCNA_00710 0.70 -1.2
768,347 - CCNA_00710 0.71 -2.1
768,418 + CCNA_00710 0.77 +0.6
768,426 - CCNA_00710 0.77 -1.1
768,448 + CCNA_00710 0.79 +0.5
768,456 - CCNA_00710 0.80 -0.1
768,456 - CCNA_00710 0.80 +0.4
768,456 - CCNA_00710 0.80 -0.8
768,456 - CCNA_00710 0.80 +0.5
768,456 - CCNA_00710 0.80 -0.1
768,470 + CCNA_00710 0.81 -1.1
768,478 - CCNA_00710 0.82 -0.1
768,478 - CCNA_00710 0.82 -0.2
768,478 - CCNA_00710 0.82 -2.4
768,478 - CCNA_00710 0.82 -1.3
768,478 - CCNA_00710 0.82 +0.4
768,478 - CCNA_00710 0.82 +0.2
768,486 - CCNA_00710 0.82 -1.6
768,487 - CCNA_00710 0.83 +0.9
768,493 - CCNA_00710 0.83 +0.6
768,515 + CCNA_00710 0.85 -1.0
768,528 - CCNA_00710 0.86 -0.7
768,541 - CCNA_00710 0.87 +0.1
768,562 - CCNA_00710 0.89 +0.1
768,603 + -0.1
768,645 + +0.3
768,645 + -0.6
768,663 + -0.7
768,762 + +1.4
768,770 - +1.4
768,821 - +2.6
768,830 + -0.8
768,830 + -0.2
768,840 + +0.3
768,904 + -2.1
768,905 + +0.6
768,910 + +0.5
768,947 + CCNA_00711 0.10 +2.1
768,947 + CCNA_00711 0.10 +0.9
768,963 + +1.6
768,963 + +2.4
768,963 + CCNA_00711 0.12 +1.8
768,971 - CCNA_00711 0.13 -1.1
768,976 + CCNA_00711 0.13 -0.4
768,993 - CCNA_00711 0.15 -1.0
769,027 + CCNA_00711 0.18 -0.1
769,027 + CCNA_00711 0.18 +0.8
769,035 - CCNA_00711 0.18 -0.5
769,047 + CCNA_00711 0.19 +1.0
769,049 + CCNA_00711 0.20 +1.1
769,050 - CCNA_00711 0.20 +1.1
769,057 - CCNA_00711 0.20 +0.2
769,057 - CCNA_00711 0.20 -2.5
769,059 + CCNA_00711 0.21 -1.2
769,119 + CCNA_00711 0.26 +0.5
769,162 - CCNA_00711 0.30 +1.4
769,165 + CCNA_00711 0.30 -1.9
769,165 + +0.5
769,165 + CCNA_00711 0.30 -0.3
769,165 + CCNA_00711 0.30 -0.3
769,195 + CCNA_00711 0.33 +1.7
769,195 + CCNA_00711 0.33 -0.7
769,195 + CCNA_00711 0.33 +1.9
769,195 + CCNA_00711 0.33 -1.3
769,195 + CCNA_00711 0.33 +0.7
769,195 + CCNA_00711 0.33 -0.7
769,195 + CCNA_00711 0.33 +2.1
769,195 + CCNA_00711 0.33 -0.9
769,195 + CCNA_00711 0.33 +0.6
769,195 + CCNA_00711 0.33 +0.8
769,203 - CCNA_00711 0.34 +0.5
769,203 - CCNA_00711 0.34 -2.1
769,203 - CCNA_00711 0.34 +0.4
769,203 - CCNA_00711 0.34 -1.6
769,203 - CCNA_00711 0.34 -1.4
769,225 + CCNA_00711 0.36 -1.0
769,225 + CCNA_00711 0.36 +0.8
769,225 + CCNA_00711 0.36 +0.8
769,233 - CCNA_00711 0.36 -0.9
769,233 - CCNA_00711 0.36 +0.5
769,233 - CCNA_00711 0.36 -0.1
769,233 - CCNA_00711 0.36 +0.1
769,238 - CCNA_00711 0.37 +2.9
769,244 + CCNA_00711 0.37 -0.1
769,255 + CCNA_00711 0.38 +0.9
769,255 + CCNA_00711 0.38 -0.4
769,255 + CCNA_00711 0.38 -2.0
769,255 + CCNA_00711 0.38 -0.6
769,255 + CCNA_00711 0.38 +0.9
769,263 - CCNA_00711 0.39 -0.2
769,263 - CCNA_00711 0.39 -0.3
769,263 - CCNA_00711 0.39 -1.3
769,263 - CCNA_00711 0.39 -1.1
769,263 - CCNA_00711 0.39 -0.2
769,263 - CCNA_00711 0.39 +0.1
769,263 - CCNA_00711 0.39 -1.1
769,305 - CCNA_00711 0.43 -1.4
769,322 + CCNA_00711 0.44 +1.7
769,330 + CCNA_00711 0.45 -0.1
769,345 + CCNA_00711 0.47 +0.9
769,353 - CCNA_00711 0.47 +0.9
769,367 - CCNA_00711 0.49 +0.1
769,415 + CCNA_00711 0.53 -0.3
769,451 + CCNA_00711 0.56 -1.9
769,451 + CCNA_00711 0.56 +0.4
769,456 + CCNA_00711 0.57 +0.0
769,459 - CCNA_00711 0.57 +1.5
769,461 + CCNA_00711 0.57 -1.6
769,461 + CCNA_00711 0.57 +0.7
769,464 - CCNA_00711 0.57 -1.9
769,468 + CCNA_00711 0.58 -1.0
769,468 + CCNA_00711 0.58 -1.0
769,468 + CCNA_00711 0.58 +0.0
769,469 - CCNA_00711 0.58 +0.5
769,469 - CCNA_00711 0.58 -1.0
769,469 - CCNA_00711 0.58 +0.1
769,469 - CCNA_00711 0.58 +0.0
769,498 + CCNA_00711 0.60 +0.6
769,500 + CCNA_00711 0.61 -0.6
769,500 + CCNA_00711 0.61 -1.4
769,508 - CCNA_00711 0.61 -0.1
769,589 - CCNA_00711 0.69 -1.4
769,591 + CCNA_00711 0.69 +0.4
769,591 + CCNA_00711 0.69 +1.5
769,591 + CCNA_00711 0.69 +1.7
769,591 + CCNA_00711 0.69 +2.3
769,591 + CCNA_00711 0.69 -0.3
769,599 - CCNA_00711 0.70 -1.5
769,599 - CCNA_00711 0.70 +0.4
769,599 - CCNA_00711 0.70 -0.9
769,631 - CCNA_00711 0.72 +1.1
769,652 + CCNA_00711 0.74 -0.1
769,660 - CCNA_00711 0.75 -0.4
769,674 + CCNA_00711 0.76 -2.0
769,685 - CCNA_00711 0.77 +1.5

Or see this region's nucleotide sequence