Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00542 and CCNA_00543 are separated by 48 nucleotides CCNA_00543 and CCNA_00544 are separated by 215 nucleotides CCNA_00544 and CCNA_00545 are separated by 70 nucleotides CCNA_00545 and CCNA_00546 are separated by 123 nucleotides
CCNA_00542: CCNA_00542 - hypothetical protein, at 561,341 to 561,664
_00542
CCNA_00543: CCNA_00543 - methyl-accepting chemotaxis protein, at 561,713 to 562,363
_00543
CCNA_00544: CCNA_00544 - acetyl-CoA acetyltransferase, at 562,579 to 563,754
_00544
CCNA_00545: CCNA_00545 - acetoacetyl-CoA reductase, at 563,825 to 564,547
_00545
CCNA_00546: CCNA_00546 - hypothetical protein, at 564,671 to 565,453
_00546
Position (kb) 562
563
564 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 561.594 kb on + strand, within CCNA_00542 at 561.665 kb on + strand at 561.665 kb on + strand at 561.668 kb on - strand at 561.672 kb on + strand at 561.672 kb on + strand at 561.672 kb on + strand at 561.673 kb on - strand at 561.680 kb on - strand at 561.680 kb on - strand at 561.686 kb on - strand at 561.711 kb on + strand at 561.711 kb on + strand at 561.711 kb on + strand at 561.719 kb on - strand at 561.719 kb on - strand at 561.797 kb on - strand, within CCNA_00543 at 561.908 kb on + strand, within CCNA_00543 at 561.925 kb on - strand, within CCNA_00543 at 561.966 kb on + strand, within CCNA_00543 at 561.974 kb on - strand, within CCNA_00543 at 561.974 kb on - strand, within CCNA_00543 at 561.974 kb on - strand, within CCNA_00543 at 561.974 kb on - strand, within CCNA_00543 at 561.974 kb on - strand, within CCNA_00543 at 561.974 kb on - strand, within CCNA_00543 at 561.997 kb on - strand, within CCNA_00543 at 562.039 kb on + strand, within CCNA_00543 at 562.129 kb on - strand at 562.153 kb on - strand, within CCNA_00543 at 562.158 kb on - strand, within CCNA_00543 at 562.229 kb on - strand, within CCNA_00543 at 562.378 kb on - strand at 562.408 kb on - strand at 562.421 kb on + strand at 562.435 kb on + strand at 562.452 kb on - strand at 562.452 kb on - strand at 562.453 kb on - strand at 562.453 kb on - strand at 562.470 kb on - strand at 562.470 kb on - strand at 562.470 kb on - strand at 562.494 kb on - strand at 562.553 kb on + strand at 562.623 kb on - strand at 562.629 kb on + strand at 562.636 kb on + strand at 562.644 kb on - strand at 562.646 kb on + strand at 562.655 kb on + strand at 562.665 kb on + strand at 562.665 kb on + strand at 562.673 kb on - strand at 562.673 kb on - strand at 562.673 kb on - strand at 562.735 kb on - strand, within CCNA_00544 at 562.752 kb on - strand, within CCNA_00544 at 562.767 kb on + strand, within CCNA_00544 at 562.785 kb on - strand, within CCNA_00544 at 562.811 kb on + strand, within CCNA_00544 at 562.828 kb on - strand, within CCNA_00544 at 562.844 kb on + strand, within CCNA_00544 at 562.847 kb on - strand, within CCNA_00544 at 562.849 kb on + strand, within CCNA_00544 at 562.849 kb on + strand, within CCNA_00544 at 562.849 kb on + strand, within CCNA_00544 at 562.849 kb on + strand, within CCNA_00544 at 562.849 kb on + strand, within CCNA_00544 at 562.849 kb on + strand, within CCNA_00544 at 562.852 kb on - strand, within CCNA_00544 at 562.857 kb on - strand, within CCNA_00544 at 562.891 kb on + strand, within CCNA_00544 at 562.909 kb on - strand, within CCNA_00544 at 562.926 kb on - strand, within CCNA_00544 at 562.947 kb on + strand, within CCNA_00544 at 562.949 kb on + strand, within CCNA_00544 at 562.949 kb on + strand, within CCNA_00544 at 562.949 kb on + strand, within CCNA_00544 at 562.957 kb on - strand, within CCNA_00544 at 562.957 kb on - strand, within CCNA_00544 at 563.012 kb on - strand, within CCNA_00544 at 563.047 kb on + strand, within CCNA_00544 at 563.055 kb on - strand, within CCNA_00544 at 563.055 kb on - strand, within CCNA_00544 at 563.055 kb on - strand, within CCNA_00544 at 563.056 kb on + strand, within CCNA_00544 at 563.056 kb on + strand, within CCNA_00544 at 563.064 kb on - strand, within CCNA_00544 at 563.078 kb on + strand, within CCNA_00544 at 563.095 kb on + strand, within CCNA_00544 at 563.103 kb on - strand, within CCNA_00544 at 563.173 kb on + strand, within CCNA_00544 at 563.199 kb on + strand, within CCNA_00544 at 563.208 kb on - strand, within CCNA_00544 at 563.221 kb on + strand, within CCNA_00544 at 563.222 kb on - strand, within CCNA_00544 at 563.229 kb on - strand, within CCNA_00544 at 563.257 kb on + strand, within CCNA_00544 at 563.317 kb on + strand, within CCNA_00544 at 563.317 kb on + strand, within CCNA_00544 at 563.325 kb on - strand, within CCNA_00544 at 563.344 kb on + strand, within CCNA_00544 at 563.344 kb on + strand, within CCNA_00544 at 563.344 kb on + strand, within CCNA_00544 at 563.354 kb on + strand, within CCNA_00544 at 563.362 kb on - strand, within CCNA_00544 at 563.391 kb on + strand, within CCNA_00544 at 563.391 kb on + strand, within CCNA_00544 at 563.399 kb on - strand, within CCNA_00544 at 563.399 kb on - strand, within CCNA_00544 at 563.399 kb on - strand, within CCNA_00544 at 563.423 kb on - strand, within CCNA_00544 at 563.494 kb on + strand, within CCNA_00544 at 563.507 kb on + strand, within CCNA_00544 at 563.521 kb on + strand, within CCNA_00544 at 563.521 kb on + strand, within CCNA_00544 at 563.529 kb on - strand, within CCNA_00544 at 563.542 kb on + strand, within CCNA_00544 at 563.545 kb on - strand, within CCNA_00544 at 563.549 kb on - strand, within CCNA_00544 at 563.562 kb on - strand, within CCNA_00544 at 563.574 kb on - strand, within CCNA_00544 at 563.575 kb on - strand, within CCNA_00544 at 563.619 kb on + strand, within CCNA_00544 at 563.638 kb on - strand at 563.649 kb on + strand at 563.692 kb on + strand at 563.714 kb on - strand at 563.720 kb on + strand at 563.746 kb on - strand at 563.748 kb on + strand at 563.748 kb on + strand at 563.748 kb on + strand at 563.748 kb on + strand at 563.756 kb on - strand at 563.760 kb on + strand at 563.760 kb on + strand at 563.760 kb on + strand at 563.760 kb on + strand at 563.768 kb on - strand at 563.768 kb on - strand at 563.942 kb on + strand, within CCNA_00545 at 563.942 kb on + strand, within CCNA_00545 at 563.952 kb on + strand, within CCNA_00545 at 563.983 kb on + strand, within CCNA_00545 at 563.983 kb on + strand at 563.983 kb on - strand, within CCNA_00545 at 564.007 kb on + strand, within CCNA_00545 at 564.015 kb on - strand, within CCNA_00545 at 564.029 kb on + strand, within CCNA_00545 at 564.036 kb on - strand, within CCNA_00545 at 564.095 kb on - strand at 564.097 kb on + strand, within CCNA_00545 at 564.100 kb on + strand, within CCNA_00545 at 564.108 kb on + strand, within CCNA_00545 at 564.108 kb on + strand, within CCNA_00545 at 564.113 kb on + strand, within CCNA_00545 at 564.116 kb on - strand, within CCNA_00545 at 564.116 kb on - strand, within CCNA_00545 at 564.120 kb on + strand, within CCNA_00545 at 564.120 kb on + strand, within CCNA_00545 at 564.121 kb on + strand, within CCNA_00545 at 564.128 kb on - strand, within CCNA_00545 at 564.149 kb on - strand, within CCNA_00545 at 564.183 kb on - strand, within CCNA_00545 at 564.183 kb on - strand, within CCNA_00545 at 564.212 kb on + strand, within CCNA_00545 at 564.220 kb on - strand, within CCNA_00545 at 564.225 kb on - strand, within CCNA_00545 at 564.225 kb on - strand, within CCNA_00545 at 564.242 kb on + strand, within CCNA_00545 at 564.256 kb on + strand, within CCNA_00545 at 564.276 kb on + strand, within CCNA_00545 at 564.290 kb on + strand, within CCNA_00545 at 564.302 kb on + strand, within CCNA_00545 at 564.303 kb on + strand, within CCNA_00545 at 564.310 kb on - strand, within CCNA_00545 at 564.313 kb on + strand, within CCNA_00545 at 564.320 kb on + strand, within CCNA_00545 at 564.320 kb on + strand, within CCNA_00545 at 564.328 kb on - strand, within CCNA_00545 at 564.344 kb on - strand, within CCNA_00545 at 564.434 kb on + strand, within CCNA_00545 at 564.502 kb on - strand at 564.502 kb on - strand at 564.507 kb on + strand at 564.507 kb on + strand at 564.507 kb on + strand at 564.507 kb on + strand at 564.513 kb on + strand at 564.515 kb on - strand at 564.515 kb on - strand at 564.515 kb on - strand at 564.535 kb on + strand at 564.538 kb on - strand at 564.538 kb on - strand at 564.538 kb on - strand at 564.543 kb on - strand at 564.543 kb on - strand at 564.550 kb on - strand at 564.571 kb on - strand at 564.571 kb on - strand at 564.589 kb on + strand at 564.601 kb on + strand at 564.607 kb on + strand at 564.622 kb on + strand at 564.656 kb on + strand at 564.656 kb on - strand at 564.660 kb on + strand at 564.675 kb on - strand at 564.716 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 561,594 + CCNA_00542 0.78 -1.5 561,665 + -1.6 561,665 + -1.4 561,668 - +1.7 561,672 + -0.3 561,672 + -1.4 561,672 + -2.5 561,673 - +1.8 561,680 - +1.8 561,680 - +0.3 561,686 - -0.1 561,711 + -1.9 561,711 + -1.2 561,711 + -1.4 561,719 - +0.5 561,719 - +2.0 561,797 - CCNA_00543 0.13 -0.2 561,908 + CCNA_00543 0.30 +0.9 561,925 - CCNA_00543 0.33 +0.2 561,966 + CCNA_00543 0.39 +2.1 561,974 - CCNA_00543 0.40 +0.4 561,974 - CCNA_00543 0.40 -0.1 561,974 - CCNA_00543 0.40 +1.1 561,974 - CCNA_00543 0.40 +0.1 561,974 - CCNA_00543 0.40 +0.2 561,974 - CCNA_00543 0.40 +1.1 561,997 - CCNA_00543 0.44 +1.3 562,039 + CCNA_00543 0.50 -0.7 562,129 - +1.7 562,153 - CCNA_00543 0.68 +1.4 562,158 - CCNA_00543 0.68 +0.6 562,229 - CCNA_00543 0.79 +0.2 562,378 - +0.1 562,408 - -0.1 562,421 + -0.4 562,435 + +1.1 562,452 - -0.3 562,452 - -0.8 562,453 - -0.9 562,453 - -0.5 562,470 - -0.9 562,470 - +1.0 562,470 - -1.0 562,494 - -0.7 562,553 + +0.4 562,623 - +0.2 562,629 + +1.7 562,636 + +0.4 562,644 - +2.1 562,646 + +0.8 562,655 + +0.7 562,665 + -0.0 562,665 + -0.1 562,673 - -0.3 562,673 - -1.4 562,673 - +0.4 562,735 - CCNA_00544 0.13 +0.5 562,752 - CCNA_00544 0.15 +1.1 562,767 + CCNA_00544 0.16 +0.8 562,785 - CCNA_00544 0.18 -0.3 562,811 + CCNA_00544 0.20 +0.8 562,828 - CCNA_00544 0.21 +0.1 562,844 + CCNA_00544 0.23 -0.4 562,847 - CCNA_00544 0.23 -0.3 562,849 + CCNA_00544 0.23 +0.8 562,849 + CCNA_00544 0.23 -0.2 562,849 + CCNA_00544 0.23 +1.7 562,849 + CCNA_00544 0.23 +1.4 562,849 + CCNA_00544 0.23 +1.0 562,849 + CCNA_00544 0.23 +1.5 562,852 - CCNA_00544 0.23 -0.1 562,857 - CCNA_00544 0.24 -0.0 562,891 + CCNA_00544 0.27 +0.3 562,909 - CCNA_00544 0.28 +0.9 562,926 - CCNA_00544 0.30 +0.4 562,947 + CCNA_00544 0.31 +1.2 562,949 + CCNA_00544 0.31 +0.8 562,949 + CCNA_00544 0.31 +1.1 562,949 + CCNA_00544 0.31 +1.2 562,957 - CCNA_00544 0.32 +1.1 562,957 - CCNA_00544 0.32 +0.2 563,012 - CCNA_00544 0.37 -0.4 563,047 + CCNA_00544 0.40 +1.4 563,055 - CCNA_00544 0.40 +0.7 563,055 - CCNA_00544 0.40 +0.4 563,055 - CCNA_00544 0.40 -2.3 563,056 + CCNA_00544 0.41 +0.8 563,056 + CCNA_00544 0.41 +1.6 563,064 - CCNA_00544 0.41 -0.8 563,078 + CCNA_00544 0.42 +0.9 563,095 + CCNA_00544 0.44 +1.4 563,103 - CCNA_00544 0.45 -0.6 563,173 + CCNA_00544 0.51 +0.5 563,199 + CCNA_00544 0.53 +0.1 563,208 - CCNA_00544 0.53 +0.4 563,221 + CCNA_00544 0.55 +1.7 563,222 - CCNA_00544 0.55 +0.1 563,229 - CCNA_00544 0.55 -0.2 563,257 + CCNA_00544 0.58 +1.0 563,317 + CCNA_00544 0.63 +0.5 563,317 + CCNA_00544 0.63 +1.9 563,325 - CCNA_00544 0.63 +0.2 563,344 + CCNA_00544 0.65 +1.2 563,344 + CCNA_00544 0.65 +1.9 563,344 + CCNA_00544 0.65 -0.3 563,354 + CCNA_00544 0.66 -1.3 563,362 - CCNA_00544 0.67 +0.4 563,391 + CCNA_00544 0.69 +1.7 563,391 + CCNA_00544 0.69 +2.2 563,399 - CCNA_00544 0.70 -1.4 563,399 - CCNA_00544 0.70 +0.9 563,399 - CCNA_00544 0.70 -0.5 563,423 - CCNA_00544 0.72 +0.4 563,494 + CCNA_00544 0.78 +0.9 563,507 + CCNA_00544 0.79 +1.9 563,521 + CCNA_00544 0.80 +1.0 563,521 + CCNA_00544 0.80 +0.6 563,529 - CCNA_00544 0.81 -0.6 563,542 + CCNA_00544 0.82 +1.2 563,545 - CCNA_00544 0.82 +0.2 563,549 - CCNA_00544 0.82 -1.1 563,562 - CCNA_00544 0.84 -0.6 563,574 - CCNA_00544 0.85 +0.4 563,575 - CCNA_00544 0.85 +1.4 563,619 + CCNA_00544 0.88 +0.3 563,638 - +1.1 563,649 + +1.9 563,692 + +1.6 563,714 - +0.5 563,720 + +0.9 563,746 - -1.3 563,748 + +1.8 563,748 + +1.8 563,748 + +2.1 563,748 + +2.5 563,756 - -0.6 563,760 + +3.4 563,760 + +1.7 563,760 + +2.2 563,760 + +1.2 563,768 - +0.5 563,768 - +0.6 563,942 + CCNA_00545 0.16 +0.9 563,942 + CCNA_00545 0.16 +0.9 563,952 + CCNA_00545 0.18 +1.1 563,983 + CCNA_00545 0.22 +1.4 563,983 + +1.7 563,983 - CCNA_00545 0.22 +1.7 564,007 + CCNA_00545 0.25 +0.2 564,015 - CCNA_00545 0.26 -0.2 564,029 + CCNA_00545 0.28 +0.2 564,036 - CCNA_00545 0.29 -0.0 564,095 - +2.4 564,097 + CCNA_00545 0.38 +2.4 564,100 + CCNA_00545 0.38 +1.8 564,108 + CCNA_00545 0.39 +2.5 564,108 + CCNA_00545 0.39 +0.4 564,113 + CCNA_00545 0.40 -0.1 564,116 - CCNA_00545 0.40 +2.7 564,116 - CCNA_00545 0.40 +0.5 564,120 + CCNA_00545 0.41 +0.8 564,120 + CCNA_00545 0.41 +0.9 564,121 + CCNA_00545 0.41 +0.2 564,128 - CCNA_00545 0.42 -0.3 564,149 - CCNA_00545 0.45 -0.7 564,183 - CCNA_00545 0.50 -0.9 564,183 - CCNA_00545 0.50 +1.3 564,212 + CCNA_00545 0.54 +1.6 564,220 - CCNA_00545 0.55 -1.0 564,225 - CCNA_00545 0.55 +0.8 564,225 - CCNA_00545 0.55 +3.5 564,242 + CCNA_00545 0.58 +1.4 564,256 + CCNA_00545 0.60 +0.1 564,276 + CCNA_00545 0.62 +2.3 564,290 + CCNA_00545 0.64 +1.8 564,302 + CCNA_00545 0.66 +1.2 564,303 + CCNA_00545 0.66 +3.0 564,310 - CCNA_00545 0.67 -1.5 564,313 + CCNA_00545 0.67 +1.6 564,320 + CCNA_00545 0.68 +0.8 564,320 + CCNA_00545 0.68 +0.1 564,328 - CCNA_00545 0.70 -0.6 564,344 - CCNA_00545 0.72 -0.6 564,434 + CCNA_00545 0.84 +2.7 564,502 - -2.6 564,502 - -1.2 564,507 + +2.4 564,507 + +2.5 564,507 + +1.6 564,507 + +1.6 564,513 + +3.3 564,515 - +2.5 564,515 - -0.1 564,515 - +0.5 564,535 + +2.9 564,538 - +0.2 564,538 - -0.9 564,538 - +0.5 564,543 - +0.4 564,543 - +2.1 564,550 - +0.4 564,571 - -0.1 564,571 - -0.4 564,589 + +1.5 564,601 + +2.4 564,607 + -0.2 564,622 + +1.5 564,656 + +1.9 564,656 - +1.1 564,660 + +1.3 564,675 - -1.4 564,716 + +0.1
Or see this region's nucleotide sequence