Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00397

Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00395 and CCNA_00396 are separated by 90 nucleotidesCCNA_00396 and CCNA_00397 are separated by 130 nucleotidesCCNA_00397 and CCNA_00398 are separated by 126 nucleotides CCNA_00395: CCNA_00395 - feruloyl-CoA synthetase, at 411,052 to 412,842 _00395 CCNA_00396: CCNA_00396 - hypothetical protein, at 412,933 to 413,610 _00396 CCNA_00397: CCNA_00397 - acetolactate synthase, at 413,741 to 415,279 _00397 CCNA_00398: CCNA_00398 - hypothetical protein, at 415,406 to 416,764 _00398 Position (kb) 413 414 415 416Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 412.746 kb on + strandat 412.746 kb on + strandat 412.754 kb on - strandat 412.836 kb on + strandat 412.836 kb on + strandat 412.859 kb on - strandat 412.888 kb on - strandat 412.895 kb on + strandat 412.895 kb on + strandat 412.895 kb on + strandat 412.895 kb on + strandat 412.900 kb on + strandat 412.900 kb on + strandat 412.903 kb on - strandat 412.903 kb on - strandat 412.956 kb on - strandat 413.001 kb on + strand, within CCNA_00396at 413.011 kb on + strand, within CCNA_00396at 413.035 kb on - strand, within CCNA_00396at 413.037 kb on - strand, within CCNA_00396at 413.037 kb on - strand, within CCNA_00396at 413.040 kb on + strand, within CCNA_00396at 413.055 kb on - strand, within CCNA_00396at 413.095 kb on + strand, within CCNA_00396at 413.097 kb on - strand, within CCNA_00396at 413.141 kb on + strand, within CCNA_00396at 413.141 kb on + strand, within CCNA_00396at 413.161 kb on + strand, within CCNA_00396at 413.169 kb on - strand, within CCNA_00396at 413.169 kb on - strand, within CCNA_00396at 413.169 kb on - strand, within CCNA_00396at 413.186 kb on + strand, within CCNA_00396at 413.186 kb on + strand, within CCNA_00396at 413.195 kb on + strand, within CCNA_00396at 413.203 kb on - strand, within CCNA_00396at 413.203 kb on - strand, within CCNA_00396at 413.208 kb on - strand, within CCNA_00396at 413.212 kb on - strand, within CCNA_00396at 413.244 kb on - strand, within CCNA_00396at 413.289 kb on + strand, within CCNA_00396at 413.292 kb on + strand, within CCNA_00396at 413.297 kb on + strand, within CCNA_00396at 413.297 kb on + strand, within CCNA_00396at 413.305 kb on - strand, within CCNA_00396at 413.313 kb on + strand, within CCNA_00396at 413.321 kb on - strand, within CCNA_00396at 413.321 kb on - strand, within CCNA_00396at 413.410 kb on - strand, within CCNA_00396at 413.412 kb on - strand, within CCNA_00396at 413.435 kb on - strand, within CCNA_00396at 413.465 kb on - strand, within CCNA_00396at 413.494 kb on + strand, within CCNA_00396at 413.524 kb on + strand, within CCNA_00396at 413.537 kb on - strand, within CCNA_00396at 413.546 kb on + strandat 413.669 kb on + strandat 413.693 kb on - strandat 413.726 kb on + strandat 413.825 kb on - strandat 413.837 kb on + strandat 413.837 kb on + strandat 413.837 kb on + strandat 413.837 kb on + strandat 413.837 kb on + strandat 413.845 kb on - strandat 413.845 kb on - strandat 413.845 kb on - strandat 413.845 kb on - strandat 413.868 kb on + strandat 413.886 kb on - strandat 413.935 kb on + strand, within CCNA_00397at 413.945 kb on + strand, within CCNA_00397at 413.945 kb on - strand, within CCNA_00397at 413.953 kb on + strand, within CCNA_00397at 413.953 kb on - strand, within CCNA_00397at 413.953 kb on - strand, within CCNA_00397at 414.024 kb on + strand, within CCNA_00397at 414.042 kb on + strand, within CCNA_00397at 414.044 kb on + strand, within CCNA_00397at 414.100 kb on + strand, within CCNA_00397at 414.105 kb on + strand, within CCNA_00397at 414.106 kb on - strand, within CCNA_00397at 414.108 kb on - strand, within CCNA_00397at 414.110 kb on + strand, within CCNA_00397at 414.141 kb on + strand, within CCNA_00397at 414.199 kb on + strand, within CCNA_00397at 414.204 kb on + strand, within CCNA_00397at 414.207 kb on - strand, within CCNA_00397at 414.207 kb on - strand, within CCNA_00397at 414.252 kb on + strand, within CCNA_00397at 414.260 kb on - strand, within CCNA_00397at 414.293 kb on + strand, within CCNA_00397at 414.306 kb on - strand, within CCNA_00397at 414.317 kb on + strand, within CCNA_00397at 414.325 kb on - strand, within CCNA_00397at 414.341 kb on + strand, within CCNA_00397at 414.455 kb on + strand, within CCNA_00397at 414.506 kb on - strand, within CCNA_00397at 414.514 kb on + strand, within CCNA_00397at 414.539 kb on + strand, within CCNA_00397at 414.544 kb on - strand, within CCNA_00397at 414.584 kb on - strand, within CCNA_00397at 414.585 kb on + strand, within CCNA_00397at 414.693 kb on + strand, within CCNA_00397at 414.704 kb on + strand, within CCNA_00397at 414.709 kb on + strand, within CCNA_00397at 414.717 kb on - strand, within CCNA_00397at 414.778 kb on + strand, within CCNA_00397at 414.786 kb on - strand, within CCNA_00397at 414.798 kb on - strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.852 kb on - strand, within CCNA_00397at 414.852 kb on - strand, within CCNA_00397at 414.852 kb on - strand, within CCNA_00397at 414.852 kb on - strand, within CCNA_00397at 414.852 kb on - strand, within CCNA_00397at 414.875 kb on + strand, within CCNA_00397at 414.901 kb on + strand, within CCNA_00397at 414.921 kb on + strand, within CCNA_00397at 414.926 kb on + strand, within CCNA_00397at 414.934 kb on - strand, within CCNA_00397at 414.977 kb on + strand, within CCNA_00397at 414.977 kb on + strand, within CCNA_00397at 414.979 kb on + strand, within CCNA_00397at 414.985 kb on - strand, within CCNA_00397at 414.987 kb on - strand, within CCNA_00397at 414.987 kb on - strand, within CCNA_00397at 414.989 kb on + strand, within CCNA_00397at 414.989 kb on + strand, within CCNA_00397at 414.989 kb on + strand, within CCNA_00397at 414.989 kb on + strand, within CCNA_00397at 414.989 kb on + strand, within CCNA_00397at 414.989 kb on + strand, within CCNA_00397at 414.997 kb on - strand, within CCNA_00397at 414.997 kb on - strand, within CCNA_00397at 414.997 kb on - strand, within CCNA_00397at 414.997 kb on - strand, within CCNA_00397at 414.997 kb on - strand, within CCNA_00397at 415.039 kb on + strand, within CCNA_00397at 415.071 kb on + strand, within CCNA_00397at 415.071 kb on + strand, within CCNA_00397at 415.071 kb on + strand, within CCNA_00397at 415.076 kb on + strand, within CCNA_00397at 415.079 kb on - strand, within CCNA_00397at 415.084 kb on - strand, within CCNA_00397at 415.084 kb on - strand, within CCNA_00397at 415.124 kb on - strand, within CCNA_00397at 415.172 kb on + strandat 415.181 kb on - strandat 415.225 kb on - strandat 415.231 kb on - strandat 415.231 kb on - strandat 415.241 kb on + strandat 415.253 kb on - strandat 415.261 kb on + strandat 415.307 kb on - strandat 415.330 kb on - strandat 415.399 kb on + strandat 415.403 kb on + strandat 415.410 kb on + strandat 415.411 kb on - strandat 415.452 kb on + strandat 415.452 kb on + strandat 415.460 kb on - strandat 415.460 kb on - strandat 415.460 kb on - strandat 415.464 kb on + strandat 415.477 kb on - strandat 415.495 kb on + strandat 415.514 kb on + strandat 415.514 kb on + strandat 415.514 kb on + strandat 415.514 kb on + strandat 415.514 kb on + strandat 415.514 kb on + strandat 415.514 kb on + strandat 415.522 kb on - strandat 415.522 kb on - strandat 415.522 kb on - strandat 415.522 kb on - strandat 415.522 kb on - strandat 415.522 kb on - strandat 415.522 kb on - strandat 415.522 kb on - strandat 415.526 kb on + strandat 415.551 kb on + strand, within CCNA_00398at 415.562 kb on + strand, within CCNA_00398at 415.573 kb on + strand, within CCNA_00398at 415.596 kb on + strand, within CCNA_00398at 415.596 kb on + strand, within CCNA_00398at 415.604 kb on - strand, within CCNA_00398at 415.636 kb on - strand, within CCNA_00398at 415.697 kb on - strand, within CCNA_00398at 415.712 kb on + strand, within CCNA_00398at 415.712 kb on + strand, within CCNA_00398at 415.712 kb on + strand, within CCNA_00398at 415.712 kb on + strand, within CCNA_00398at 415.712 kb on + strand, within CCNA_00398at 415.720 kb on - strand, within CCNA_00398at 415.720 kb on - strand, within CCNA_00398at 415.721 kb on - strand, within CCNA_00398at 415.775 kb on - strand, within CCNA_00398at 415.775 kb on - strand, within CCNA_00398at 415.819 kb on + strand, within CCNA_00398at 415.834 kb on - strand, within CCNA_00398at 415.845 kb on + strand, within CCNA_00398at 415.849 kb on - strand, within CCNA_00398at 415.853 kb on - strand, within CCNA_00398at 415.888 kb on - strand, within CCNA_00398at 415.925 kb on - strand, within CCNA_00398at 415.997 kb on + strand, within CCNA_00398at 415.998 kb on + strand, within CCNA_00398at 415.998 kb on + strand, within CCNA_00398at 416.005 kb on - strand, within CCNA_00398at 416.005 kb on - strand, within CCNA_00398at 416.006 kb on - strand, within CCNA_00398at 416.006 kb on - strand, within CCNA_00398at 416.006 kb on - strand, within CCNA_00398at 416.025 kb on + strand, within CCNA_00398at 416.051 kb on + strand, within CCNA_00398at 416.051 kb on + strand, within CCNA_00398at 416.059 kb on - strand, within CCNA_00398at 416.059 kb on - strand, within CCNA_00398at 416.106 kb on + strand, within CCNA_00398at 416.139 kb on + strand, within CCNA_00398at 416.145 kb on - strand, within CCNA_00398at 416.146 kb on - strand, within CCNA_00398at 416.153 kb on - strand, within CCNA_00398at 416.159 kb on + strand, within CCNA_00398at 416.163 kb on - strand, within CCNA_00398at 416.195 kb on + strand, within CCNA_00398at 416.198 kb on + strand, within CCNA_00398at 416.203 kb on - strand, within CCNA_00398at 416.230 kb on + strand, within CCNA_00398at 416.237 kb on + strand, within CCNA_00398at 416.237 kb on + strand, within CCNA_00398at 416.237 kb on + strand, within CCNA_00398at 416.245 kb on - strand, within CCNA_00398at 416.245 kb on - strand, within CCNA_00398at 416.247 kb on + strand, within CCNA_00398at 416.255 kb on - strand, within CCNA_00398

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol%
remove
412,746 + -1.1
412,746 + -0.3
412,754 - -0.8
412,836 + +0.9
412,836 + +1.4
412,859 - -0.4
412,888 - -0.4
412,895 + +1.1
412,895 + -0.3
412,895 + -0.2
412,895 + -0.1
412,900 + +0.4
412,900 + -0.6
412,903 - -2.3
412,903 - -0.8
412,956 - -2.2
413,001 + CCNA_00396 0.10 -1.0
413,011 + CCNA_00396 0.12 -0.9
413,035 - CCNA_00396 0.15 -0.2
413,037 - CCNA_00396 0.15 +0.0
413,037 - CCNA_00396 0.15 -0.8
413,040 + CCNA_00396 0.16 +1.1
413,055 - CCNA_00396 0.18 +0.5
413,095 + CCNA_00396 0.24 -1.9
413,097 - CCNA_00396 0.24 +2.5
413,141 + CCNA_00396 0.31 -2.1
413,141 + CCNA_00396 0.31 -0.8
413,161 + CCNA_00396 0.34 +1.4
413,169 - CCNA_00396 0.35 -1.2
413,169 - CCNA_00396 0.35 +0.6
413,169 - CCNA_00396 0.35 -0.1
413,186 + CCNA_00396 0.37 -1.5
413,186 + CCNA_00396 0.37 -2.2
413,195 + CCNA_00396 0.39 +1.8
413,203 - CCNA_00396 0.40 -1.2
413,203 - CCNA_00396 0.40 +0.4
413,208 - CCNA_00396 0.41 -0.9
413,212 - CCNA_00396 0.41 -0.3
413,244 - CCNA_00396 0.46 -1.6
413,289 + CCNA_00396 0.53 +0.0
413,292 + CCNA_00396 0.53 -0.4
413,297 + CCNA_00396 0.54 +0.0
413,297 + CCNA_00396 0.54 +1.1
413,305 - CCNA_00396 0.55 +0.0
413,313 + CCNA_00396 0.56 -0.7
413,321 - CCNA_00396 0.57 -0.5
413,321 - CCNA_00396 0.57 -1.7
413,410 - CCNA_00396 0.70 +1.3
413,412 - CCNA_00396 0.71 -0.5
413,435 - CCNA_00396 0.74 +1.6
413,465 - CCNA_00396 0.78 -1.4
413,494 + CCNA_00396 0.83 -2.1
413,524 + CCNA_00396 0.87 -2.3
413,537 - CCNA_00396 0.89 -0.2
413,546 + +0.0
413,669 + +0.3
413,693 - +2.2
413,726 + -0.4
413,825 - -1.5
413,837 + +0.7
413,837 + +0.6
413,837 + +0.4
413,837 + -0.4
413,837 + +0.3
413,845 - -0.7
413,845 - -1.3
413,845 - +0.7
413,845 - -0.4
413,868 + +1.5
413,886 - -0.4
413,935 + CCNA_00397 0.13 -0.3
413,945 + CCNA_00397 0.13 -0.0
413,945 - CCNA_00397 0.13 -0.5
413,953 + CCNA_00397 0.14 +0.5
413,953 - CCNA_00397 0.14 -0.6
413,953 - CCNA_00397 0.14 -0.3
414,024 + CCNA_00397 0.18 +1.1
414,042 + CCNA_00397 0.20 -1.6
414,044 + CCNA_00397 0.20 +0.7
414,100 + CCNA_00397 0.23 +0.4
414,105 + CCNA_00397 0.24 -0.2
414,106 - CCNA_00397 0.24 -0.7
414,108 - CCNA_00397 0.24 -1.9
414,110 + CCNA_00397 0.24 +1.2
414,141 + CCNA_00397 0.26 +1.1
414,199 + CCNA_00397 0.30 +0.4
414,204 + CCNA_00397 0.30 +0.2
414,207 - CCNA_00397 0.30 +0.6
414,207 - CCNA_00397 0.30 +0.2
414,252 + CCNA_00397 0.33 +0.9
414,260 - CCNA_00397 0.34 -0.9
414,293 + CCNA_00397 0.36 +0.7
414,306 - CCNA_00397 0.37 -0.6
414,317 + CCNA_00397 0.37 -0.7
414,325 - CCNA_00397 0.38 +0.7
414,341 + CCNA_00397 0.39 +0.1
414,455 + CCNA_00397 0.46 -2.9
414,506 - CCNA_00397 0.50 +0.8
414,514 + CCNA_00397 0.50 +0.2
414,539 + CCNA_00397 0.52 +0.8
414,544 - CCNA_00397 0.52 -2.8
414,584 - CCNA_00397 0.55 +0.8
414,585 + CCNA_00397 0.55 -0.5
414,693 + CCNA_00397 0.62 -1.1
414,704 + CCNA_00397 0.63 -0.5
414,709 + CCNA_00397 0.63 -0.4
414,717 - CCNA_00397 0.63 +0.8
414,778 + CCNA_00397 0.67 +0.4
414,786 - CCNA_00397 0.68 -1.2
414,798 - CCNA_00397 0.69 +0.2
414,844 + CCNA_00397 0.72 -1.7
414,844 + CCNA_00397 0.72 +0.3
414,844 + CCNA_00397 0.72 +0.5
414,844 + CCNA_00397 0.72 +0.6
414,844 + CCNA_00397 0.72 -0.2
414,844 + CCNA_00397 0.72 +1.4
414,844 + CCNA_00397 0.72 -0.2
414,844 + CCNA_00397 0.72 +1.2
414,844 + CCNA_00397 0.72 +0.2
414,844 + CCNA_00397 0.72 -0.4
414,844 + CCNA_00397 0.72 +1.0
414,852 - CCNA_00397 0.72 -0.6
414,852 - CCNA_00397 0.72 -0.6
414,852 - CCNA_00397 0.72 -0.3
414,852 - CCNA_00397 0.72 -1.6
414,852 - CCNA_00397 0.72 +1.6
414,875 + CCNA_00397 0.74 +0.3
414,901 + CCNA_00397 0.75 +0.5
414,921 + CCNA_00397 0.77 +0.6
414,926 + CCNA_00397 0.77 +1.3
414,934 - CCNA_00397 0.78 -0.4
414,977 + CCNA_00397 0.80 +2.2
414,977 + CCNA_00397 0.80 -0.4
414,979 + CCNA_00397 0.80 -0.2
414,985 - CCNA_00397 0.81 -0.3
414,987 - CCNA_00397 0.81 +0.1
414,987 - CCNA_00397 0.81 +0.8
414,989 + CCNA_00397 0.81 +1.9
414,989 + CCNA_00397 0.81 -0.8
414,989 + CCNA_00397 0.81 +0.9
414,989 + CCNA_00397 0.81 +1.1
414,989 + CCNA_00397 0.81 -0.6
414,989 + CCNA_00397 0.81 -0.2
414,997 - CCNA_00397 0.82 -0.8
414,997 - CCNA_00397 0.82 -0.4
414,997 - CCNA_00397 0.82 -3.1
414,997 - CCNA_00397 0.82 -0.2
414,997 - CCNA_00397 0.82 +0.2
415,039 + CCNA_00397 0.84 +0.3
415,071 + CCNA_00397 0.86 +0.7
415,071 + CCNA_00397 0.86 +0.2
415,071 + CCNA_00397 0.86 +0.4
415,076 + CCNA_00397 0.87 +1.0
415,079 - CCNA_00397 0.87 +0.2
415,084 - CCNA_00397 0.87 +0.6
415,084 - CCNA_00397 0.87 +0.6
415,124 - CCNA_00397 0.90 -0.9
415,172 + +1.4
415,181 - +1.9
415,225 - -0.4
415,231 - -1.0
415,231 - +1.5
415,241 + +0.8
415,253 - -0.3
415,261 + +0.7
415,307 - +1.0
415,330 - -0.6
415,399 + -1.3
415,403 + -1.6
415,410 + -0.2
415,411 - +2.6
415,452 + -0.8
415,452 + -1.5
415,460 - +2.2
415,460 - +2.5
415,460 - +1.7
415,464 + -0.6
415,477 - +1.9
415,495 + +0.4
415,514 + -0.9
415,514 + -3.9
415,514 + -0.4
415,514 + -0.3
415,514 + -2.3
415,514 + -0.6
415,514 + -0.8
415,522 - +1.8
415,522 - +1.8
415,522 - +1.8
415,522 - +1.8
415,522 - +1.8
415,522 - +1.2
415,522 - +2.6
415,522 - +1.5
415,526 + -0.5
415,551 + CCNA_00398 0.11 -3.2
415,562 + CCNA_00398 0.11 -1.2
415,573 + CCNA_00398 0.12 +0.6
415,596 + CCNA_00398 0.14 -1.9
415,596 + CCNA_00398 0.14 -1.0
415,604 - CCNA_00398 0.15 +2.0
415,636 - CCNA_00398 0.17 +2.4
415,697 - CCNA_00398 0.21 +1.3
415,712 + CCNA_00398 0.23 -0.5
415,712 + CCNA_00398 0.23 -1.1
415,712 + CCNA_00398 0.23 -1.7
415,712 + CCNA_00398 0.23 -0.8
415,712 + CCNA_00398 0.23 -2.7
415,720 - CCNA_00398 0.23 +1.5
415,720 - CCNA_00398 0.23 +1.9
415,721 - CCNA_00398 0.23 +1.5
415,775 - CCNA_00398 0.27 +1.4
415,775 - CCNA_00398 0.27 +1.4
415,819 + CCNA_00398 0.30 -1.6
415,834 - CCNA_00398 0.31 +0.1
415,845 + CCNA_00398 0.32 -1.9
415,849 - CCNA_00398 0.33 +0.6
415,853 - CCNA_00398 0.33 +1.4
415,888 - CCNA_00398 0.35 +0.9
415,925 - CCNA_00398 0.38 +0.6
415,997 + CCNA_00398 0.43 -3.1
415,998 + CCNA_00398 0.44 -2.9
415,998 + CCNA_00398 0.44 -0.7
416,005 - CCNA_00398 0.44 +0.9
416,005 - CCNA_00398 0.44 +1.7
416,006 - CCNA_00398 0.44 +0.9
416,006 - CCNA_00398 0.44 +1.1
416,006 - CCNA_00398 0.44 +0.9
416,025 + CCNA_00398 0.46 -3.0
416,051 + CCNA_00398 0.47 -0.1
416,051 + CCNA_00398 0.47 +0.2
416,059 - CCNA_00398 0.48 -0.3
416,059 - CCNA_00398 0.48 +0.7
416,106 + CCNA_00398 0.52 -2.0
416,139 + CCNA_00398 0.54 -1.3
416,145 - CCNA_00398 0.54 +0.7
416,146 - CCNA_00398 0.54 -0.2
416,153 - CCNA_00398 0.55 -0.4
416,159 + CCNA_00398 0.55 -2.8
416,163 - CCNA_00398 0.56 +0.6
416,195 + CCNA_00398 0.58 -0.1
416,198 + CCNA_00398 0.58 -2.2
416,203 - CCNA_00398 0.59 +0.1
416,230 + CCNA_00398 0.61 -1.2
416,237 + CCNA_00398 0.61 -2.2
416,237 + CCNA_00398 0.61 -1.6
416,237 + CCNA_00398 0.61 +0.0
416,245 - CCNA_00398 0.62 +1.1
416,245 - CCNA_00398 0.62 -0.4
416,247 + CCNA_00398 0.62 +0.1
416,255 - CCNA_00398 0.62 -0.6

Or see this region's nucleotide sequence