Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33830

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS33825 and AZOBR_RS33830 are separated by 514 nucleotides AZOBR_RS33825: AZOBR_RS33825 - hypothetical protein, at 126,462 to 127,604 _RS33825 AZOBR_RS33830: AZOBR_RS33830 - mannose-1-phosphate guanylyltransferase, at 128,119 to 129,564 _RS33830 Position (kb) 128 129 130Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 127.119 kb on - strand, within AZOBR_RS33825at 127.119 kb on - strand, within AZOBR_RS33825at 127.129 kb on - strand, within AZOBR_RS33825at 127.129 kb on - strand, within AZOBR_RS33825at 127.246 kb on + strandat 127.246 kb on + strand, within AZOBR_RS33825at 127.247 kb on - strand, within AZOBR_RS33825at 127.247 kb on - strand, within AZOBR_RS33825at 127.247 kb on - strand, within AZOBR_RS33825at 127.416 kb on + strand, within AZOBR_RS33825at 127.416 kb on + strand, within AZOBR_RS33825at 127.666 kb on - strandat 127.824 kb on + strandat 128.042 kb on + strandat 128.042 kb on + strandat 128.043 kb on - strandat 128.073 kb on - strandat 128.124 kb on + strandat 128.602 kb on + strand, within AZOBR_RS33830at 128.603 kb on - strand, within AZOBR_RS33830at 128.603 kb on - strand, within AZOBR_RS33830at 128.695 kb on + strandat 128.696 kb on - strand, within AZOBR_RS33830at 128.713 kb on + strand, within AZOBR_RS33830at 128.714 kb on - strand, within AZOBR_RS33830at 128.755 kb on + strand, within AZOBR_RS33830at 128.756 kb on - strandat 128.756 kb on - strand, within AZOBR_RS33830at 128.893 kb on + strand, within AZOBR_RS33830at 128.893 kb on + strand, within AZOBR_RS33830at 128.893 kb on + strand, within AZOBR_RS33830at 128.894 kb on - strand, within AZOBR_RS33830at 128.894 kb on - strand, within AZOBR_RS33830at 128.894 kb on - strand, within AZOBR_RS33830at 129.052 kb on + strand, within AZOBR_RS33830at 129.052 kb on + strand, within AZOBR_RS33830at 129.052 kb on + strand, within AZOBR_RS33830at 129.052 kb on + strand, within AZOBR_RS33830at 129.052 kb on + strand, within AZOBR_RS33830at 129.052 kb on + strand, within AZOBR_RS33830at 129.052 kb on + strand, within AZOBR_RS33830at 129.052 kb on + strand, within AZOBR_RS33830at 129.052 kb on + strand, within AZOBR_RS33830at 129.053 kb on - strand, within AZOBR_RS33830at 129.053 kb on - strand, within AZOBR_RS33830at 129.053 kb on - strand, within AZOBR_RS33830at 129.053 kb on - strand, within AZOBR_RS33830at 129.053 kb on - strand, within AZOBR_RS33830at 129.053 kb on - strand, within AZOBR_RS33830at 129.227 kb on - strand, within AZOBR_RS33830at 129.421 kb on + strandat 129.421 kb on + strandat 129.421 kb on + strandat 129.421 kb on + strandat 129.421 kb on + strandat 129.422 kb on - strandat 129.422 kb on - strandat 129.422 kb on - strandat 129.422 kb on - strandat 129.424 kb on - strandat 129.502 kb on + strandat 129.503 kb on - strandat 129.562 kb on + strandat 129.562 kb on + strandat 129.563 kb on - strandat 129.866 kb on + strandat 129.866 kb on + strandat 129.866 kb on + strandat 129.921 kb on + strandat 129.922 kb on - strandat 129.922 kb on - strandat 129.922 kb on - strandat 129.922 kb on - strandat 130.038 kb on + strandat 130.362 kb on + strandat 130.399 kb on - strandat 130.442 kb on - strandat 130.447 kb on + strandat 130.447 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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127,119 - AZOBR_RS33825 0.57 -2.5
127,119 - AZOBR_RS33825 0.57 +0.3
127,129 - AZOBR_RS33825 0.58 -1.7
127,129 - AZOBR_RS33825 0.58 -2.0
127,246 + -1.1
127,246 + AZOBR_RS33825 0.69 -1.9
127,247 - AZOBR_RS33825 0.69 -0.3
127,247 - AZOBR_RS33825 0.69 +1.3
127,247 - AZOBR_RS33825 0.69 -1.0
127,416 + AZOBR_RS33825 0.83 -0.8
127,416 + AZOBR_RS33825 0.83 -2.0
127,666 - +1.7
127,824 + -0.9
128,042 + +0.2
128,042 + +1.0
128,043 - -3.3
128,073 - -2.1
128,124 + +0.3
128,602 + AZOBR_RS33830 0.33 -2.1
128,603 - AZOBR_RS33830 0.33 -2.2
128,603 - AZOBR_RS33830 0.33 -1.6
128,695 + +1.3
128,696 - AZOBR_RS33830 0.40 -3.1
128,713 + AZOBR_RS33830 0.41 -1.9
128,714 - AZOBR_RS33830 0.41 -2.7
128,755 + AZOBR_RS33830 0.44 -2.0
128,756 - +0.3
128,756 - AZOBR_RS33830 0.44 -0.7
128,893 + AZOBR_RS33830 0.54 -2.1
128,893 + AZOBR_RS33830 0.54 +1.3
128,893 + AZOBR_RS33830 0.54 -1.5
128,894 - AZOBR_RS33830 0.54 -2.4
128,894 - AZOBR_RS33830 0.54 -3.5
128,894 - AZOBR_RS33830 0.54 -3.8
129,052 + AZOBR_RS33830 0.65 -0.7
129,052 + AZOBR_RS33830 0.65 -1.6
129,052 + AZOBR_RS33830 0.65 -3.8
129,052 + AZOBR_RS33830 0.65 -3.4
129,052 + AZOBR_RS33830 0.65 -3.5
129,052 + AZOBR_RS33830 0.65 -2.4
129,052 + AZOBR_RS33830 0.65 -2.1
129,052 + AZOBR_RS33830 0.65 +0.3
129,052 + AZOBR_RS33830 0.65 -4.9
129,053 - AZOBR_RS33830 0.65 -2.5
129,053 - AZOBR_RS33830 0.65 -1.3
129,053 - AZOBR_RS33830 0.65 -2.6
129,053 - AZOBR_RS33830 0.65 -2.4
129,053 - AZOBR_RS33830 0.65 -3.6
129,053 - AZOBR_RS33830 0.65 -2.1
129,227 - AZOBR_RS33830 0.77 -1.1
129,421 + -0.3
129,421 + -3.9
129,421 + -3.2
129,421 + -1.7
129,421 + -1.2
129,422 - -3.0
129,422 - -1.3
129,422 - -1.1
129,422 - -0.9
129,424 - -2.9
129,502 + -2.5
129,503 - -1.7
129,562 + +0.4
129,562 + -0.2
129,563 - -0.6
129,866 + +0.4
129,866 + +0.4
129,866 + +0.2
129,921 + -1.0
129,922 - -0.3
129,922 - -0.1
129,922 - +0.5
129,922 - +0.1
130,038 + -2.1
130,362 + +0.2
130,399 - +0.1
130,442 - -0.3
130,447 + +0.7
130,447 + +1.3

Or see this region's nucleotide sequence