Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12970

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12965 and AZOBR_RS12970 are separated by 79 nucleotidesAZOBR_RS12970 and AZOBR_RS12975 are separated by 263 nucleotidesAZOBR_RS12975 and AZOBR_RS12980 are separated by 63 nucleotides AZOBR_RS12965: AZOBR_RS12965 - sodium:proton antiporter, at 2,733,220 to 2,734,446 _RS12965 AZOBR_RS12970: AZOBR_RS12970 - aspartate aminotransferase, at 2,734,526 to 2,735,731 _RS12970 AZOBR_RS12975: AZOBR_RS12975 - cytochrome C, at 2,735,995 to 2,736,423 _RS12975 AZOBR_RS12980: AZOBR_RS12980 - cytochrome B, at 2,736,487 to 2,737,194 _RS12980 Position (kb) 2734 2735 2736Strain fitness (log2 ratio) -3 -2 -1 0 1at 2733.562 kb on + strand, within AZOBR_RS12965at 2733.751 kb on + strand, within AZOBR_RS12965at 2733.752 kb on - strand, within AZOBR_RS12965at 2733.851 kb on - strand, within AZOBR_RS12965at 2733.851 kb on - strand, within AZOBR_RS12965at 2733.851 kb on - strand, within AZOBR_RS12965at 2734.228 kb on + strand, within AZOBR_RS12965at 2734.229 kb on - strand, within AZOBR_RS12965at 2734.229 kb on - strand, within AZOBR_RS12965at 2735.785 kb on - strandat 2735.785 kb on - strandat 2735.957 kb on - strandat 2736.299 kb on - strand, within AZOBR_RS12975at 2736.299 kb on - strand, within AZOBR_RS12975at 2736.299 kb on - strand, within AZOBR_RS12975at 2736.653 kb on + strand, within AZOBR_RS12980

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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2,733,562 + AZOBR_RS12965 0.28 -0.6
2,733,751 + AZOBR_RS12965 0.43 -2.8
2,733,752 - AZOBR_RS12965 0.43 -2.0
2,733,851 - AZOBR_RS12965 0.51 -3.0
2,733,851 - AZOBR_RS12965 0.51 -3.3
2,733,851 - AZOBR_RS12965 0.51 -3.5
2,734,228 + AZOBR_RS12965 0.82 -2.6
2,734,229 - AZOBR_RS12965 0.82 -3.5
2,734,229 - AZOBR_RS12965 0.82 -1.7
2,735,785 - -0.6
2,735,785 - -1.2
2,735,957 - +0.4
2,736,299 - AZOBR_RS12975 0.71 -0.0
2,736,299 - AZOBR_RS12975 0.71 +0.8
2,736,299 - AZOBR_RS12975 0.71 +0.0
2,736,653 + AZOBR_RS12980 0.23 -1.0

Or see this region's nucleotide sequence