Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03110 and AZOBR_RS03115 are separated by 88 nucleotides AZOBR_RS03115 and AZOBR_RS03120 are separated by 88 nucleotides AZOBR_RS03120 and AZOBR_RS03125 are separated by 14 nucleotides
AZOBR_RS03110: AZOBR_RS03110 - integration host factor subunit beta, at 664,483 to 664,767
_RS03110
AZOBR_RS03115: AZOBR_RS03115 - hypothetical protein, at 664,856 to 665,245
_RS03115
AZOBR_RS03120: AZOBR_RS03120 - ornithine cyclodeaminase, at 665,334 to 666,290
_RS03120
AZOBR_RS03125: AZOBR_RS03125 - FAD dependent oxidoreductase, at 666,305 to 667,417
_RS03125
Position (kb) 665
666
667 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 664.391 kb on + strand at 664.391 kb on + strand at 664.534 kb on + strand, within AZOBR_RS03110 at 664.534 kb on + strand at 664.535 kb on - strand, within AZOBR_RS03110 at 664.840 kb on + strand at 664.841 kb on - strand at 665.097 kb on - strand, within AZOBR_RS03115 at 665.097 kb on - strand, within AZOBR_RS03115 at 665.587 kb on - strand, within AZOBR_RS03120 at 665.688 kb on + strand, within AZOBR_RS03120 at 665.689 kb on - strand, within AZOBR_RS03120 at 666.148 kb on - strand, within AZOBR_RS03120 at 666.186 kb on + strand, within AZOBR_RS03120 at 666.464 kb on + strand, within AZOBR_RS03125 at 666.465 kb on - strand, within AZOBR_RS03125 at 666.974 kb on + strand, within AZOBR_RS03125 at 666.975 kb on - strand, within AZOBR_RS03125 at 667.055 kb on + strand, within AZOBR_RS03125 at 667.238 kb on + strand, within AZOBR_RS03125 at 667.238 kb on + strand, within AZOBR_RS03125 at 667.238 kb on + strand, within AZOBR_RS03125 at 667.239 kb on - strand, within AZOBR_RS03125 at 667.239 kb on - strand, within AZOBR_RS03125
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 664,391 + -0.1 664,391 + -0.2 664,534 + AZOBR_RS03110 0.18 -0.6 664,534 + -1.0 664,535 - AZOBR_RS03110 0.18 -2.9 664,840 + +0.0 664,841 - -1.0 665,097 - AZOBR_RS03115 0.62 -1.0 665,097 - AZOBR_RS03115 0.62 +0.3 665,587 - AZOBR_RS03120 0.26 -0.4 665,688 + AZOBR_RS03120 0.37 -1.2 665,689 - AZOBR_RS03120 0.37 -0.1 666,148 - AZOBR_RS03120 0.85 +0.1 666,186 + AZOBR_RS03120 0.89 +0.1 666,464 + AZOBR_RS03125 0.14 +0.5 666,465 - AZOBR_RS03125 0.14 -0.2 666,974 + AZOBR_RS03125 0.60 +0.8 666,975 - AZOBR_RS03125 0.60 -0.0 667,055 + AZOBR_RS03125 0.67 +0.1 667,238 + AZOBR_RS03125 0.84 +0.2 667,238 + AZOBR_RS03125 0.84 +0.1 667,238 + AZOBR_RS03125 0.84 -0.3 667,239 - AZOBR_RS03125 0.84 -0.9 667,239 - AZOBR_RS03125 0.84 -0.3
Or see this region's nucleotide sequence