Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01770

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01760 and AZOBR_RS01765 overlap by 4 nucleotidesAZOBR_RS01765 and AZOBR_RS01770 are separated by 9 nucleotidesAZOBR_RS01770 and AZOBR_RS01775 overlap by 8 nucleotidesAZOBR_RS01775 and AZOBR_RS01780 are separated by 41 nucleotides AZOBR_RS01760: AZOBR_RS01760 - septum formation protein Maf, at 359,034 to 359,642 _RS01760 AZOBR_RS01765: AZOBR_RS01765 - shikimate 5-dehydrogenase, at 359,639 to 360,478 _RS01765 AZOBR_RS01770: AZOBR_RS01770 - dephospho-CoA kinase, at 360,488 to 361,132 _RS01770 AZOBR_RS01775: AZOBR_RS01775 - DNA polymerase III subunit epsilon, at 361,125 to 361,802 _RS01775 AZOBR_RS01780: AZOBR_RS01780 - quinone oxidoreductase, at 361,844 to 362,818 _RS01780 Position (kb) 360 361 362Strain fitness (log2 ratio) -3 -2 -1 0 1at 359.517 kb on + strand, within AZOBR_RS01760at 359.517 kb on + strand, within AZOBR_RS01760at 361.103 kb on + strandat 361.103 kb on + strandat 361.248 kb on + strand, within AZOBR_RS01775at 361.249 kb on - strand, within AZOBR_RS01775at 361.569 kb on + strand, within AZOBR_RS01775at 361.612 kb on - strand, within AZOBR_RS01775at 361.612 kb on - strand, within AZOBR_RS01775at 361.612 kb on - strand, within AZOBR_RS01775at 361.612 kb on - strand, within AZOBR_RS01775at 361.957 kb on + strand, within AZOBR_RS01780at 361.957 kb on + strand, within AZOBR_RS01780at 361.958 kb on - strand, within AZOBR_RS01780at 362.016 kb on + strand, within AZOBR_RS01780at 362.016 kb on + strand, within AZOBR_RS01780at 362.017 kb on - strand, within AZOBR_RS01780at 362.017 kb on - strand, within AZOBR_RS01780at 362.043 kb on + strand, within AZOBR_RS01780at 362.043 kb on + strand, within AZOBR_RS01780at 362.044 kb on - strand, within AZOBR_RS01780at 362.044 kb on - strand, within AZOBR_RS01780at 362.044 kb on - strand, within AZOBR_RS01780at 362.044 kb on - strand, within AZOBR_RS01780at 362.119 kb on + strand, within AZOBR_RS01780at 362.119 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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359,517 + AZOBR_RS01760 0.79 +0.2
359,517 + AZOBR_RS01760 0.79 +0.0
361,103 + -1.4
361,103 + -0.5
361,248 + AZOBR_RS01775 0.18 -1.5
361,249 - AZOBR_RS01775 0.18 -2.3
361,569 + AZOBR_RS01775 0.65 -1.5
361,612 - AZOBR_RS01775 0.72 -2.1
361,612 - AZOBR_RS01775 0.72 -2.9
361,612 - AZOBR_RS01775 0.72 -3.1
361,612 - AZOBR_RS01775 0.72 -3.6
361,957 + AZOBR_RS01780 0.12 -0.1
361,957 + AZOBR_RS01780 0.12 +0.4
361,958 - AZOBR_RS01780 0.12 -1.6
362,016 + AZOBR_RS01780 0.18 -0.4
362,016 + AZOBR_RS01780 0.18 +1.0
362,017 - AZOBR_RS01780 0.18 +0.0
362,017 - AZOBR_RS01780 0.18 +0.3
362,043 + AZOBR_RS01780 0.20 -0.8
362,043 + AZOBR_RS01780 0.20 -0.1
362,044 - AZOBR_RS01780 0.21 -0.4
362,044 - AZOBR_RS01780 0.21 -0.1
362,044 - AZOBR_RS01780 0.21 -0.2
362,044 - AZOBR_RS01780 0.21 -0.1
362,119 + AZOBR_RS01780 0.28 -1.1
362,119 + -1.0

Or see this region's nucleotide sequence