Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25940 and AO353_25945 overlap by 4 nucleotides AO353_25945 and AO353_25950 are separated by 318 nucleotides AO353_25950 and AO353_25955 are separated by 14 nucleotides AO353_25955 and AO353_25960 are separated by 33 nucleotides
AO353_25940: AO353_25940 - hypothetical protein, at 5,719,804 to 5,720,202
_25940
AO353_25945: AO353_25945 - hypothetical protein, at 5,720,199 to 5,720,471
_25945
AO353_25950: AO353_25950 - ecotin, at 5,720,790 to 5,721,269
_25950
AO353_25955: AO353_25955 - NIPSNAP family containing protein, at 5,721,284 to 5,721,589
_25955
AO353_25960: AO353_25960 - threonine dehydratase, at 5,721,623 to 5,722,630
_25960
Position (kb) 5720
5721
5722 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.879 kb on - strand, within AO353_25940 at 5719.879 kb on - strand, within AO353_25940 at 5719.880 kb on + strand, within AO353_25940 at 5719.881 kb on - strand, within AO353_25940 at 5719.984 kb on + strand, within AO353_25940 at 5719.984 kb on + strand, within AO353_25940 at 5720.201 kb on - strand at 5720.303 kb on + strand, within AO353_25945 at 5720.365 kb on + strand, within AO353_25945 at 5720.365 kb on + strand, within AO353_25945 at 5720.365 kb on + strand, within AO353_25945 at 5720.441 kb on + strand, within AO353_25945 at 5720.442 kb on - strand, within AO353_25945 at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.473 kb on - strand at 5720.473 kb on - strand at 5720.473 kb on - strand at 5720.490 kb on + strand at 5720.542 kb on - strand at 5720.542 kb on - strand at 5720.589 kb on + strand at 5720.589 kb on + strand at 5720.590 kb on - strand at 5720.590 kb on - strand at 5720.590 kb on - strand at 5720.590 kb on - strand at 5720.590 kb on - strand at 5720.594 kb on + strand at 5720.594 kb on + strand at 5720.594 kb on + strand at 5720.594 kb on + strand at 5720.594 kb on + strand at 5720.595 kb on - strand at 5720.595 kb on - strand at 5720.595 kb on - strand at 5720.595 kb on - strand at 5720.626 kb on + strand at 5720.635 kb on + strand at 5720.635 kb on + strand at 5720.636 kb on - strand at 5720.686 kb on - strand at 5720.744 kb on + strand at 5720.744 kb on + strand at 5720.744 kb on + strand at 5720.745 kb on - strand at 5720.745 kb on - strand at 5720.745 kb on - strand at 5720.904 kb on - strand, within AO353_25950 at 5720.949 kb on + strand at 5720.949 kb on + strand, within AO353_25950 at 5720.949 kb on + strand, within AO353_25950 at 5720.950 kb on - strand, within AO353_25950 at 5720.950 kb on - strand, within AO353_25950 at 5720.950 kb on - strand, within AO353_25950 at 5720.950 kb on - strand, within AO353_25950 at 5721.165 kb on + strand, within AO353_25950 at 5721.165 kb on + strand, within AO353_25950 at 5721.166 kb on - strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.193 kb on - strand, within AO353_25950 at 5721.193 kb on - strand, within AO353_25950 at 5721.267 kb on + strand at 5721.268 kb on - strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.289 kb on + strand at 5721.289 kb on + strand at 5721.290 kb on - strand at 5721.290 kb on - strand at 5721.305 kb on + strand at 5721.305 kb on + strand at 5721.305 kb on + strand at 5721.344 kb on + strand, within AO353_25955 at 5721.344 kb on + strand, within AO353_25955 at 5721.398 kb on + strand, within AO353_25955 at 5721.435 kb on - strand, within AO353_25955 at 5721.485 kb on - strand, within AO353_25955 at 5721.485 kb on - strand, within AO353_25955 at 5721.485 kb on - strand, within AO353_25955 at 5721.517 kb on - strand, within AO353_25955 at 5721.555 kb on - strand, within AO353_25955 at 5721.606 kb on + strand at 5721.606 kb on + strand at 5721.606 kb on + strand at 5721.606 kb on + strand at 5721.606 kb on + strand at 5721.607 kb on - strand at 5721.607 kb on - strand at 5721.607 kb on - strand at 5721.655 kb on + strand at 5721.656 kb on - strand at 5721.656 kb on - strand at 5721.668 kb on - strand at 5721.726 kb on + strand, within AO353_25960 at 5721.726 kb on + strand, within AO353_25960 at 5721.726 kb on + strand, within AO353_25960 at 5721.726 kb on + strand, within AO353_25960 at 5721.727 kb on - strand, within AO353_25960 at 5721.727 kb on - strand, within AO353_25960 at 5721.727 kb on - strand, within AO353_25960 at 5721.727 kb on - strand, within AO353_25960 at 5721.727 kb on - strand, within AO353_25960 at 5721.789 kb on + strand, within AO353_25960 at 5721.790 kb on - strand, within AO353_25960 at 5721.793 kb on + strand, within AO353_25960 at 5721.793 kb on + strand, within AO353_25960 at 5721.793 kb on + strand, within AO353_25960 at 5721.794 kb on - strand, within AO353_25960 at 5721.794 kb on - strand, within AO353_25960 at 5721.794 kb on - strand, within AO353_25960 at 5721.873 kb on + strand, within AO353_25960 at 5721.874 kb on - strand, within AO353_25960 at 5721.874 kb on - strand, within AO353_25960 at 5721.874 kb on - strand, within AO353_25960 at 5721.896 kb on + strand, within AO353_25960 at 5722.017 kb on + strand, within AO353_25960 at 5722.017 kb on + strand, within AO353_25960 at 5722.017 kb on + strand, within AO353_25960 at 5722.018 kb on - strand, within AO353_25960 at 5722.026 kb on + strand, within AO353_25960 at 5722.026 kb on + strand, within AO353_25960 at 5722.203 kb on + strand, within AO353_25960 at 5722.203 kb on + strand, within AO353_25960 at 5722.204 kb on - strand, within AO353_25960 at 5722.204 kb on - strand, within AO353_25960 at 5722.204 kb on - strand, within AO353_25960
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 5,719,878 + AO353_25940 0.19 -0.2 5,719,878 + AO353_25940 0.19 +0.9 5,719,878 + AO353_25940 0.19 -0.5 5,719,878 + AO353_25940 0.19 -0.6 5,719,878 + AO353_25940 0.19 +0.4 5,719,878 + AO353_25940 0.19 -0.2 5,719,879 - AO353_25940 0.19 +1.1 5,719,879 - AO353_25940 0.19 -0.7 5,719,880 + AO353_25940 0.19 -0.9 5,719,881 - AO353_25940 0.19 -1.3 5,719,984 + AO353_25940 0.45 -0.3 5,719,984 + AO353_25940 0.45 -0.3 5,720,201 - +1.3 5,720,303 + AO353_25945 0.38 +1.1 5,720,365 + AO353_25945 0.61 +0.6 5,720,365 + AO353_25945 0.61 +0.1 5,720,365 + AO353_25945 0.61 -0.0 5,720,441 + AO353_25945 0.89 -2.1 5,720,442 - AO353_25945 0.89 +0.2 5,720,472 + -0.2 5,720,472 + +0.7 5,720,472 + -1.7 5,720,472 + +0.9 5,720,472 + +0.2 5,720,472 + -0.5 5,720,473 - +1.5 5,720,473 - -1.8 5,720,473 - +0.7 5,720,490 + +0.7 5,720,542 - +0.5 5,720,542 - +0.1 5,720,589 + +1.6 5,720,589 + -0.8 5,720,590 - -0.3 5,720,590 - +1.1 5,720,590 - -0.8 5,720,590 - +0.2 5,720,590 - -1.7 5,720,594 + -1.1 5,720,594 + +0.5 5,720,594 + +0.5 5,720,594 + -0.1 5,720,594 + -0.0 5,720,595 - -0.3 5,720,595 - +0.3 5,720,595 - -0.2 5,720,595 - +1.0 5,720,626 + +0.7 5,720,635 + -0.5 5,720,635 + +1.1 5,720,636 - +0.5 5,720,686 - +0.2 5,720,744 + -0.8 5,720,744 + -1.8 5,720,744 + -0.1 5,720,745 - +0.1 5,720,745 - -1.2 5,720,745 - -0.3 5,720,904 - AO353_25950 0.24 +0.0 5,720,949 + +0.5 5,720,949 + AO353_25950 0.33 +0.9 5,720,949 + AO353_25950 0.33 +0.0 5,720,950 - AO353_25950 0.33 +1.1 5,720,950 - AO353_25950 0.33 +1.5 5,720,950 - AO353_25950 0.33 +0.7 5,720,950 - AO353_25950 0.33 +0.5 5,721,165 + AO353_25950 0.78 +0.7 5,721,165 + AO353_25950 0.78 -0.2 5,721,166 - AO353_25950 0.78 -0.9 5,721,192 + AO353_25950 0.84 -0.2 5,721,192 + AO353_25950 0.84 +0.5 5,721,192 + AO353_25950 0.84 -0.0 5,721,192 + AO353_25950 0.84 +2.3 5,721,192 + AO353_25950 0.84 -0.9 5,721,192 + AO353_25950 0.84 +1.2 5,721,192 + AO353_25950 0.84 +1.0 5,721,193 - AO353_25950 0.84 -0.5 5,721,193 - AO353_25950 0.84 +0.1 5,721,267 + +1.5 5,721,268 - -0.8 5,721,283 + -0.7 5,721,283 + -1.3 5,721,283 + -0.2 5,721,283 + -0.5 5,721,283 + -0.3 5,721,283 + +1.6 5,721,283 + +0.5 5,721,283 + +0.5 5,721,284 - -0.8 5,721,284 - -0.5 5,721,284 - +1.0 5,721,284 - +0.5 5,721,284 - -0.5 5,721,284 - +0.1 5,721,284 - +0.3 5,721,289 + -1.0 5,721,289 + -0.7 5,721,290 - -0.5 5,721,290 - +0.1 5,721,305 + -0.0 5,721,305 + +0.2 5,721,305 + +0.3 5,721,344 + AO353_25955 0.20 -0.5 5,721,344 + AO353_25955 0.20 -1.3 5,721,398 + AO353_25955 0.37 +0.3 5,721,435 - AO353_25955 0.49 -0.3 5,721,485 - AO353_25955 0.66 +1.1 5,721,485 - AO353_25955 0.66 -0.6 5,721,485 - AO353_25955 0.66 -0.7 5,721,517 - AO353_25955 0.76 -1.0 5,721,555 - AO353_25955 0.89 +0.2 5,721,606 + -0.5 5,721,606 + -1.4 5,721,606 + -1.1 5,721,606 + -1.9 5,721,606 + +1.2 5,721,607 - +0.2 5,721,607 - +0.0 5,721,607 - +0.0 5,721,655 + -0.8 5,721,656 - +0.5 5,721,656 - +0.3 5,721,668 - +1.1 5,721,726 + AO353_25960 0.10 +1.1 5,721,726 + AO353_25960 0.10 +0.7 5,721,726 + AO353_25960 0.10 +0.8 5,721,726 + AO353_25960 0.10 +1.5 5,721,727 - AO353_25960 0.10 +0.6 5,721,727 - AO353_25960 0.10 +0.5 5,721,727 - AO353_25960 0.10 +0.5 5,721,727 - AO353_25960 0.10 -0.6 5,721,727 - AO353_25960 0.10 +1.2 5,721,789 + AO353_25960 0.16 -0.8 5,721,790 - AO353_25960 0.17 -1.3 5,721,793 + AO353_25960 0.17 -0.1 5,721,793 + AO353_25960 0.17 +0.0 5,721,793 + AO353_25960 0.17 +0.8 5,721,794 - AO353_25960 0.17 +0.2 5,721,794 - AO353_25960 0.17 +1.8 5,721,794 - AO353_25960 0.17 -2.4 5,721,873 + AO353_25960 0.25 +0.5 5,721,874 - AO353_25960 0.25 +1.3 5,721,874 - AO353_25960 0.25 -2.2 5,721,874 - AO353_25960 0.25 -1.6 5,721,896 + AO353_25960 0.27 -3.2 5,722,017 + AO353_25960 0.39 +1.0 5,722,017 + AO353_25960 0.39 +0.1 5,722,017 + AO353_25960 0.39 -0.1 5,722,018 - AO353_25960 0.39 -0.5 5,722,026 + AO353_25960 0.40 -0.7 5,722,026 + AO353_25960 0.40 -0.5 5,722,203 + AO353_25960 0.58 -1.7 5,722,203 + AO353_25960 0.58 +0.3 5,722,204 - AO353_25960 0.58 -1.3 5,722,204 - AO353_25960 0.58 -2.0 5,722,204 - AO353_25960 0.58 +1.3
Or see this region's nucleotide sequence