Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23855

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23850 and AO353_23855 are separated by 22 nucleotidesAO353_23855 and AO353_23860 are separated by 58 nucleotides AO353_23850: AO353_23850 - nitrilase, at 5,234,595 to 5,235,515 _23850 AO353_23855: AO353_23855 - hypothetical protein, at 5,235,538 to 5,236,011 _23855 AO353_23860: AO353_23860 - xanthine permease XanP, at 5,236,070 to 5,237,542 _23860 Position (kb) 5235 5236 5237Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5234.569 kb on + strandat 5234.569 kb on + strandat 5234.569 kb on + strandat 5234.570 kb on - strandat 5234.570 kb on - strandat 5234.570 kb on - strandat 5234.570 kb on - strandat 5234.668 kb on + strandat 5234.668 kb on + strandat 5234.668 kb on + strandat 5234.668 kb on + strandat 5234.669 kb on - strandat 5234.669 kb on - strandat 5234.669 kb on - strandat 5234.669 kb on - strandat 5234.669 kb on - strandat 5234.669 kb on - strandat 5234.669 kb on - strandat 5234.669 kb on - strandat 5234.669 kb on - strandat 5234.676 kb on + strandat 5234.676 kb on + strandat 5234.677 kb on - strandat 5234.677 kb on - strandat 5234.815 kb on - strand, within AO353_23850at 5234.815 kb on - strand, within AO353_23850at 5234.931 kb on + strand, within AO353_23850at 5234.931 kb on + strand, within AO353_23850at 5234.931 kb on + strand, within AO353_23850at 5234.931 kb on + strand, within AO353_23850at 5234.931 kb on + strand, within AO353_23850at 5234.931 kb on + strand, within AO353_23850at 5234.932 kb on - strand, within AO353_23850at 5234.932 kb on - strand, within AO353_23850at 5234.932 kb on - strand, within AO353_23850at 5234.932 kb on - strand, within AO353_23850at 5234.932 kb on - strand, within AO353_23850at 5234.984 kb on + strand, within AO353_23850at 5234.984 kb on + strand, within AO353_23850at 5235.126 kb on + strand, within AO353_23850at 5235.126 kb on + strand, within AO353_23850at 5235.127 kb on - strand, within AO353_23850at 5235.127 kb on - strand, within AO353_23850at 5235.127 kb on - strand, within AO353_23850at 5235.423 kb on + strand, within AO353_23850at 5235.429 kb on + strandat 5235.429 kb on + strandat 5235.429 kb on + strandat 5235.430 kb on - strandat 5235.448 kb on - strandat 5235.448 kb on - strandat 5235.448 kb on - strandat 5235.509 kb on + strandat 5235.510 kb on - strandat 5235.510 kb on - strandat 5235.631 kb on + strand, within AO353_23855at 5235.631 kb on + strand, within AO353_23855at 5235.634 kb on + strand, within AO353_23855at 5235.634 kb on + strand, within AO353_23855at 5235.634 kb on + strand, within AO353_23855at 5235.634 kb on + strand, within AO353_23855at 5235.634 kb on + strand, within AO353_23855at 5235.634 kb on + strand, within AO353_23855at 5235.635 kb on - strand, within AO353_23855at 5235.635 kb on - strand, within AO353_23855at 5235.635 kb on - strand, within AO353_23855at 5235.635 kb on - strand, within AO353_23855at 5235.635 kb on - strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.638 kb on + strand, within AO353_23855at 5235.639 kb on - strand, within AO353_23855at 5235.639 kb on - strand, within AO353_23855at 5235.639 kb on - strand, within AO353_23855at 5235.639 kb on - strand, within AO353_23855at 5235.708 kb on + strand, within AO353_23855at 5235.709 kb on - strand, within AO353_23855at 5235.824 kb on + strand, within AO353_23855at 5235.828 kb on + strand, within AO353_23855at 5235.829 kb on - strand, within AO353_23855at 5235.829 kb on - strand, within AO353_23855at 5235.924 kb on + strand, within AO353_23855at 5235.925 kb on - strand, within AO353_23855at 5235.991 kb on + strandat 5236.213 kb on + strandat 5236.214 kb on - strandat 5236.319 kb on + strand, within AO353_23860at 5236.319 kb on + strand, within AO353_23860at 5236.319 kb on + strand, within AO353_23860at 5236.320 kb on - strand, within AO353_23860at 5236.665 kb on + strand, within AO353_23860at 5236.666 kb on - strand, within AO353_23860at 5236.794 kb on + strand, within AO353_23860at 5236.878 kb on + strand, within AO353_23860at 5236.879 kb on - strand, within AO353_23860at 5236.925 kb on + strand, within AO353_23860at 5236.926 kb on - strand, within AO353_23860at 5236.926 kb on - strand, within AO353_23860at 5236.926 kb on - strand, within AO353_23860

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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5,234,569 + -0.2
5,234,569 + -1.0
5,234,569 + -2.7
5,234,570 - -0.5
5,234,570 - +0.2
5,234,570 - +0.6
5,234,570 - +2.3
5,234,668 + -1.6
5,234,668 + +0.3
5,234,668 + +0.8
5,234,668 + -0.2
5,234,669 - -0.8
5,234,669 - -2.0
5,234,669 - +0.2
5,234,669 - -0.2
5,234,669 - -0.7
5,234,669 - -0.2
5,234,669 - -0.5
5,234,669 - +1.4
5,234,669 - +1.8
5,234,676 + +0.4
5,234,676 + -1.2
5,234,677 - -1.0
5,234,677 - -2.2
5,234,815 - AO353_23850 0.24 -0.7
5,234,815 - AO353_23850 0.24 +0.6
5,234,931 + AO353_23850 0.36 +1.4
5,234,931 + AO353_23850 0.36 -1.1
5,234,931 + AO353_23850 0.36 +0.4
5,234,931 + AO353_23850 0.36 +0.3
5,234,931 + AO353_23850 0.36 -0.3
5,234,931 + AO353_23850 0.36 -0.2
5,234,932 - AO353_23850 0.37 -0.6
5,234,932 - AO353_23850 0.37 +1.4
5,234,932 - AO353_23850 0.37 +0.6
5,234,932 - AO353_23850 0.37 -0.9
5,234,932 - AO353_23850 0.37 -0.2
5,234,984 + AO353_23850 0.42 -0.6
5,234,984 + AO353_23850 0.42 -0.2
5,235,126 + AO353_23850 0.58 -1.4
5,235,126 + AO353_23850 0.58 -0.6
5,235,127 - AO353_23850 0.58 -1.4
5,235,127 - AO353_23850 0.58 +0.1
5,235,127 - AO353_23850 0.58 +2.4
5,235,423 + AO353_23850 0.90 +0.6
5,235,429 + -3.0
5,235,429 + -0.8
5,235,429 + +2.4
5,235,430 - -1.6
5,235,448 - +0.9
5,235,448 - -1.1
5,235,448 - +0.4
5,235,509 + -1.6
5,235,510 - -1.5
5,235,510 - +0.8
5,235,631 + AO353_23855 0.20 +1.0
5,235,631 + AO353_23855 0.20 +1.3
5,235,634 + AO353_23855 0.20 -1.4
5,235,634 + AO353_23855 0.20 +0.4
5,235,634 + AO353_23855 0.20 -1.2
5,235,634 + AO353_23855 0.20 -1.6
5,235,634 + AO353_23855 0.20 -0.3
5,235,634 + AO353_23855 0.20 -1.1
5,235,635 - AO353_23855 0.20 -2.2
5,235,635 - AO353_23855 0.20 +1.9
5,235,635 - AO353_23855 0.20 -0.4
5,235,635 - AO353_23855 0.20 -1.0
5,235,635 - AO353_23855 0.20 -1.2
5,235,638 + AO353_23855 0.21 -0.3
5,235,638 + AO353_23855 0.21 -0.6
5,235,638 + AO353_23855 0.21 -1.6
5,235,638 + AO353_23855 0.21 -0.3
5,235,638 + AO353_23855 0.21 -1.2
5,235,638 + AO353_23855 0.21 +0.2
5,235,638 + AO353_23855 0.21 -1.2
5,235,638 + AO353_23855 0.21 -1.2
5,235,638 + AO353_23855 0.21 -2.6
5,235,638 + AO353_23855 0.21 -0.0
5,235,639 - AO353_23855 0.21 +0.4
5,235,639 - AO353_23855 0.21 +0.6
5,235,639 - AO353_23855 0.21 -1.2
5,235,639 - AO353_23855 0.21 -0.2
5,235,708 + AO353_23855 0.36 +1.4
5,235,709 - AO353_23855 0.36 +1.4
5,235,824 + AO353_23855 0.60 -0.6
5,235,828 + AO353_23855 0.61 -1.3
5,235,829 - AO353_23855 0.61 -0.9
5,235,829 - AO353_23855 0.61 +0.8
5,235,924 + AO353_23855 0.81 +0.8
5,235,925 - AO353_23855 0.82 +0.5
5,235,991 + -1.9
5,236,213 + -0.6
5,236,214 - -1.6
5,236,319 + AO353_23860 0.17 +0.1
5,236,319 + AO353_23860 0.17 -0.2
5,236,319 + AO353_23860 0.17 -0.7
5,236,320 - AO353_23860 0.17 +0.5
5,236,665 + AO353_23860 0.40 -0.6
5,236,666 - AO353_23860 0.40 -0.2
5,236,794 + AO353_23860 0.49 +1.0
5,236,878 + AO353_23860 0.55 -1.2
5,236,879 - AO353_23860 0.55 -2.4
5,236,925 + AO353_23860 0.58 -0.6
5,236,926 - AO353_23860 0.58 -0.9
5,236,926 - AO353_23860 0.58 -0.7
5,236,926 - AO353_23860 0.58 -1.6

Or see this region's nucleotide sequence