Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21575 and AO353_21580 overlap by 4 nucleotides AO353_21580 and AO353_21585 are separated by 15 nucleotides
AO353_21575: AO353_21575 - type VI secretion system protein ImpL, at 4,721,956 to 4,725,774
_21575
AO353_21580: AO353_21580 - type VI secretion protein, at 4,725,771 to 4,726,871
_21580
AO353_21585: AO353_21585 - hydroxyacid dehydrogenase, at 4,726,887 to 4,727,837
_21585
Position (kb)
4725
4726
4727 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4724.998 kb on + strand, within AO353_21575 at 4724.998 kb on + strand, within AO353_21575 at 4724.998 kb on + strand, within AO353_21575 at 4725.010 kb on + strand, within AO353_21575 at 4725.225 kb on + strand, within AO353_21575 at 4725.565 kb on + strand at 4725.565 kb on + strand at 4725.566 kb on - strand at 4725.566 kb on - strand at 4725.787 kb on + strand at 4725.787 kb on + strand at 4725.788 kb on - strand at 4725.873 kb on + strand at 4726.479 kb on + strand, within AO353_21580 at 4726.479 kb on + strand, within AO353_21580 at 4726.479 kb on + strand, within AO353_21580 at 4726.479 kb on + strand, within AO353_21580 at 4726.480 kb on - strand, within AO353_21580 at 4726.503 kb on + strand, within AO353_21580 at 4726.504 kb on - strand, within AO353_21580 at 4726.755 kb on + strand, within AO353_21580 at 4726.755 kb on + strand, within AO353_21580 at 4726.755 kb on + strand, within AO353_21580 at 4726.755 kb on + strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.787 kb on + strand at 4726.869 kb on + strand at 4726.870 kb on - strand at 4727.035 kb on - strand, within AO353_21585 at 4727.035 kb on - strand, within AO353_21585 at 4727.035 kb on - strand, within AO353_21585 at 4727.035 kb on - strand, within AO353_21585 at 4727.073 kb on + strand, within AO353_21585 at 4727.165 kb on + strand, within AO353_21585 at 4727.330 kb on - strand, within AO353_21585 at 4727.565 kb on + strand, within AO353_21585 at 4727.566 kb on - strand, within AO353_21585 at 4727.665 kb on + strand, within AO353_21585 at 4727.665 kb on + strand, within AO353_21585 at 4727.665 kb on + strand, within AO353_21585 at 4727.665 kb on + strand, within AO353_21585 at 4727.666 kb on - strand, within AO353_21585 at 4727.666 kb on - strand, within AO353_21585 at 4727.794 kb on + strand at 4727.794 kb on + strand at 4727.794 kb on + strand at 4727.795 kb on - strand at 4727.795 kb on - strand at 4727.823 kb on + strand at 4727.850 kb on + strand at 4727.850 kb on + strand at 4727.850 kb on + strand at 4727.863 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 4,724,998 + AO353_21575 0.80 +0.5 4,724,998 + AO353_21575 0.80 +1.2 4,724,998 + AO353_21575 0.80 +0.9 4,725,010 + AO353_21575 0.80 +0.4 4,725,225 + AO353_21575 0.86 -0.3 4,725,565 + -0.4 4,725,565 + +0.6 4,725,566 - -1.7 4,725,566 - +0.9 4,725,787 + +0.3 4,725,787 + -1.7 4,725,788 - +1.2 4,725,873 + +0.9 4,726,479 + AO353_21580 0.64 -0.4 4,726,479 + AO353_21580 0.64 -1.7 4,726,479 + AO353_21580 0.64 +0.0 4,726,479 + AO353_21580 0.64 -2.0 4,726,480 - AO353_21580 0.64 -0.7 4,726,503 + AO353_21580 0.66 -0.8 4,726,504 - AO353_21580 0.67 -2.1 4,726,755 + AO353_21580 0.89 -0.6 4,726,755 + AO353_21580 0.89 +0.4 4,726,755 + AO353_21580 0.89 -0.8 4,726,755 + AO353_21580 0.89 -1.2 4,726,756 - AO353_21580 0.89 +0.3 4,726,756 - AO353_21580 0.89 -1.6 4,726,756 - AO353_21580 0.89 -1.3 4,726,756 - AO353_21580 0.89 -0.7 4,726,756 - AO353_21580 0.89 -0.5 4,726,756 - AO353_21580 0.89 -1.0 4,726,787 + -0.9 4,726,869 + +0.0 4,726,870 - -0.1 4,727,035 - AO353_21585 0.16 +1.0 4,727,035 - AO353_21585 0.16 +1.3 4,727,035 - AO353_21585 0.16 -1.4 4,727,035 - AO353_21585 0.16 +0.4 4,727,073 + AO353_21585 0.20 +0.7 4,727,165 + AO353_21585 0.29 -1.8 4,727,330 - AO353_21585 0.47 +0.0 4,727,565 + AO353_21585 0.71 +1.5 4,727,566 - AO353_21585 0.71 +0.0 4,727,665 + AO353_21585 0.82 -1.4 4,727,665 + AO353_21585 0.82 +0.9 4,727,665 + AO353_21585 0.82 +0.7 4,727,665 + AO353_21585 0.82 -0.9 4,727,666 - AO353_21585 0.82 +0.6 4,727,666 - AO353_21585 0.82 -1.6 4,727,794 + +1.9 4,727,794 + -1.4 4,727,794 + +0.0 4,727,795 - +1.1 4,727,795 - -0.2 4,727,823 + +0.6 4,727,850 + +1.6 4,727,850 + +0.2 4,727,850 + +0.3 4,727,863 - +0.8
Or see this region's nucleotide sequence