Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21580

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21575 and AO353_21580 overlap by 4 nucleotidesAO353_21580 and AO353_21585 are separated by 15 nucleotides AO353_21575: AO353_21575 - type VI secretion system protein ImpL, at 4,721,956 to 4,725,774 _21575 AO353_21580: AO353_21580 - type VI secretion protein, at 4,725,771 to 4,726,871 _21580 AO353_21585: AO353_21585 - hydroxyacid dehydrogenase, at 4,726,887 to 4,727,837 _21585 Position (kb) 4725 4726 4727Strain fitness (log2 ratio) -2 -1 0 1 2at 4724.998 kb on + strand, within AO353_21575at 4724.998 kb on + strand, within AO353_21575at 4724.998 kb on + strand, within AO353_21575at 4725.010 kb on + strand, within AO353_21575at 4725.225 kb on + strand, within AO353_21575at 4725.565 kb on + strandat 4725.565 kb on + strandat 4725.566 kb on - strandat 4725.566 kb on - strandat 4725.787 kb on + strandat 4725.787 kb on + strandat 4725.788 kb on - strandat 4725.873 kb on + strandat 4726.479 kb on + strand, within AO353_21580at 4726.479 kb on + strand, within AO353_21580at 4726.479 kb on + strand, within AO353_21580at 4726.479 kb on + strand, within AO353_21580at 4726.480 kb on - strand, within AO353_21580at 4726.503 kb on + strand, within AO353_21580at 4726.504 kb on - strand, within AO353_21580at 4726.755 kb on + strand, within AO353_21580at 4726.755 kb on + strand, within AO353_21580at 4726.755 kb on + strand, within AO353_21580at 4726.755 kb on + strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.787 kb on + strandat 4726.869 kb on + strandat 4726.870 kb on - strandat 4727.035 kb on - strand, within AO353_21585at 4727.035 kb on - strand, within AO353_21585at 4727.035 kb on - strand, within AO353_21585at 4727.035 kb on - strand, within AO353_21585at 4727.073 kb on + strand, within AO353_21585at 4727.165 kb on + strand, within AO353_21585at 4727.330 kb on - strand, within AO353_21585at 4727.565 kb on + strand, within AO353_21585at 4727.566 kb on - strand, within AO353_21585at 4727.665 kb on + strand, within AO353_21585at 4727.665 kb on + strand, within AO353_21585at 4727.665 kb on + strand, within AO353_21585at 4727.665 kb on + strand, within AO353_21585at 4727.666 kb on - strand, within AO353_21585at 4727.666 kb on - strand, within AO353_21585at 4727.794 kb on + strandat 4727.794 kb on + strandat 4727.794 kb on + strandat 4727.795 kb on - strandat 4727.795 kb on - strandat 4727.823 kb on + strandat 4727.850 kb on + strandat 4727.850 kb on + strandat 4727.850 kb on + strandat 4727.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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4,724,998 + AO353_21575 0.80 +0.5
4,724,998 + AO353_21575 0.80 +1.2
4,724,998 + AO353_21575 0.80 +0.9
4,725,010 + AO353_21575 0.80 +0.4
4,725,225 + AO353_21575 0.86 -0.3
4,725,565 + -0.4
4,725,565 + +0.6
4,725,566 - -1.7
4,725,566 - +0.9
4,725,787 + +0.3
4,725,787 + -1.7
4,725,788 - +1.2
4,725,873 + +0.9
4,726,479 + AO353_21580 0.64 -0.4
4,726,479 + AO353_21580 0.64 -1.7
4,726,479 + AO353_21580 0.64 +0.0
4,726,479 + AO353_21580 0.64 -2.0
4,726,480 - AO353_21580 0.64 -0.7
4,726,503 + AO353_21580 0.66 -0.8
4,726,504 - AO353_21580 0.67 -2.1
4,726,755 + AO353_21580 0.89 -0.6
4,726,755 + AO353_21580 0.89 +0.4
4,726,755 + AO353_21580 0.89 -0.8
4,726,755 + AO353_21580 0.89 -1.2
4,726,756 - AO353_21580 0.89 +0.3
4,726,756 - AO353_21580 0.89 -1.6
4,726,756 - AO353_21580 0.89 -1.3
4,726,756 - AO353_21580 0.89 -0.7
4,726,756 - AO353_21580 0.89 -0.5
4,726,756 - AO353_21580 0.89 -1.0
4,726,787 + -0.9
4,726,869 + +0.0
4,726,870 - -0.1
4,727,035 - AO353_21585 0.16 +1.0
4,727,035 - AO353_21585 0.16 +1.3
4,727,035 - AO353_21585 0.16 -1.4
4,727,035 - AO353_21585 0.16 +0.4
4,727,073 + AO353_21585 0.20 +0.7
4,727,165 + AO353_21585 0.29 -1.8
4,727,330 - AO353_21585 0.47 +0.0
4,727,565 + AO353_21585 0.71 +1.5
4,727,566 - AO353_21585 0.71 +0.0
4,727,665 + AO353_21585 0.82 -1.4
4,727,665 + AO353_21585 0.82 +0.9
4,727,665 + AO353_21585 0.82 +0.7
4,727,665 + AO353_21585 0.82 -0.9
4,727,666 - AO353_21585 0.82 +0.6
4,727,666 - AO353_21585 0.82 -1.6
4,727,794 + +1.9
4,727,794 + -1.4
4,727,794 + +0.0
4,727,795 - +1.1
4,727,795 - -0.2
4,727,823 + +0.6
4,727,850 + +1.6
4,727,850 + +0.2
4,727,850 + +0.3
4,727,863 - +0.8

Or see this region's nucleotide sequence