Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19165

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19155 and AO353_19160 are separated by 116 nucleotidesAO353_19160 and AO353_19165 overlap by 4 nucleotidesAO353_19165 and AO353_19170 overlap by 17 nucleotides AO353_19155: AO353_19155 - peptide methionine sulfoxide reductase, at 4,201,946 to 4,202,341 _19155 AO353_19160: AO353_19160 - glutathione peroxidase, at 4,202,458 to 4,202,943 _19160 AO353_19165: AO353_19165 - MarR family transcriptional regulator, at 4,202,940 to 4,203,401 _19165 AO353_19170: AO353_19170 - histidine kinase, at 4,203,385 to 4,205,712 _19170 Position (kb) 4202 4203 4204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4201.940 kb on - strandat 4201.940 kb on - strandat 4201.940 kb on - strandat 4202.003 kb on + strand, within AO353_19155at 4202.003 kb on + strand, within AO353_19155at 4202.003 kb on + strand, within AO353_19155at 4202.003 kb on + strand, within AO353_19155at 4202.004 kb on - strand, within AO353_19155at 4202.004 kb on - strand, within AO353_19155at 4202.004 kb on - strand, within AO353_19155at 4202.004 kb on - strand, within AO353_19155at 4202.004 kb on - strand, within AO353_19155at 4202.051 kb on + strand, within AO353_19155at 4202.051 kb on + strand, within AO353_19155at 4202.051 kb on + strand, within AO353_19155at 4202.051 kb on + strand, within AO353_19155at 4202.051 kb on + strand, within AO353_19155at 4202.051 kb on + strand, within AO353_19155at 4202.051 kb on + strand, within AO353_19155at 4202.051 kb on + strand, within AO353_19155at 4202.052 kb on - strand, within AO353_19155at 4202.052 kb on - strand, within AO353_19155at 4202.052 kb on - strand, within AO353_19155at 4202.052 kb on - strand, within AO353_19155at 4202.052 kb on - strand, within AO353_19155at 4202.052 kb on - strand, within AO353_19155at 4202.052 kb on - strand, within AO353_19155at 4202.052 kb on - strand, within AO353_19155at 4202.052 kb on - strand, within AO353_19155at 4202.078 kb on + strand, within AO353_19155at 4202.078 kb on + strand, within AO353_19155at 4202.078 kb on + strand, within AO353_19155at 4202.078 kb on + strand, within AO353_19155at 4202.078 kb on + strand, within AO353_19155at 4202.079 kb on - strand, within AO353_19155at 4202.079 kb on - strand, within AO353_19155at 4202.079 kb on - strand, within AO353_19155at 4202.156 kb on + strand, within AO353_19155at 4202.156 kb on + strand, within AO353_19155at 4202.156 kb on + strand, within AO353_19155at 4202.156 kb on + strand, within AO353_19155at 4202.156 kb on + strand, within AO353_19155at 4202.156 kb on + strand, within AO353_19155at 4202.156 kb on + strand, within AO353_19155at 4202.156 kb on + strand, within AO353_19155at 4202.156 kb on + strand, within AO353_19155at 4202.156 kb on + strand, within AO353_19155at 4202.157 kb on - strand, within AO353_19155at 4202.157 kb on - strand, within AO353_19155at 4202.157 kb on - strand, within AO353_19155at 4202.157 kb on - strand, within AO353_19155at 4202.157 kb on - strand, within AO353_19155at 4202.157 kb on - strand, within AO353_19155at 4202.157 kb on - strand, within AO353_19155at 4202.262 kb on + strand, within AO353_19155at 4202.262 kb on + strand, within AO353_19155at 4202.262 kb on + strand, within AO353_19155at 4202.262 kb on + strand, within AO353_19155at 4202.262 kb on + strand, within AO353_19155at 4202.262 kb on + strand, within AO353_19155at 4202.262 kb on + strand, within AO353_19155at 4202.262 kb on + strand, within AO353_19155at 4202.262 kb on + strand, within AO353_19155at 4202.263 kb on - strand, within AO353_19155at 4202.263 kb on - strand, within AO353_19155at 4202.263 kb on - strand, within AO353_19155at 4202.263 kb on - strand, within AO353_19155at 4202.263 kb on - strand, within AO353_19155at 4202.263 kb on - strand, within AO353_19155at 4202.297 kb on + strand, within AO353_19155at 4202.340 kb on - strandat 4202.340 kb on - strandat 4202.478 kb on + strandat 4202.478 kb on + strandat 4202.478 kb on + strandat 4202.479 kb on - strandat 4202.479 kb on - strandat 4202.479 kb on - strandat 4202.541 kb on - strandat 4202.562 kb on + strand, within AO353_19160at 4202.562 kb on + strand, within AO353_19160at 4202.584 kb on + strand, within AO353_19160at 4202.584 kb on + strand, within AO353_19160at 4202.584 kb on + strand, within AO353_19160at 4202.584 kb on + strand, within AO353_19160at 4202.584 kb on + strand, within AO353_19160at 4202.584 kb on + strand, within AO353_19160at 4202.584 kb on + strand, within AO353_19160at 4202.585 kb on - strand, within AO353_19160at 4202.585 kb on - strand, within AO353_19160at 4202.614 kb on + strand, within AO353_19160at 4202.665 kb on - strand, within AO353_19160at 4202.810 kb on + strand, within AO353_19160at 4202.811 kb on - strand, within AO353_19160at 4202.811 kb on - strand, within AO353_19160at 4202.997 kb on + strand, within AO353_19165at 4202.997 kb on + strand, within AO353_19165at 4202.997 kb on + strand, within AO353_19165at 4203.027 kb on + strand, within AO353_19165at 4203.027 kb on + strand, within AO353_19165at 4203.027 kb on + strand, within AO353_19165at 4203.028 kb on - strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.029 kb on + strand, within AO353_19165at 4203.030 kb on - strand, within AO353_19165at 4203.060 kb on + strand, within AO353_19165at 4203.069 kb on + strand, within AO353_19165at 4203.069 kb on + strand, within AO353_19165at 4203.069 kb on + strand, within AO353_19165at 4203.069 kb on + strand, within AO353_19165at 4203.070 kb on - strand, within AO353_19165at 4203.070 kb on - strand, within AO353_19165at 4203.070 kb on - strand, within AO353_19165at 4203.088 kb on + strand, within AO353_19165at 4203.089 kb on - strand, within AO353_19165at 4203.199 kb on + strand, within AO353_19165at 4203.199 kb on + strand, within AO353_19165at 4203.199 kb on + strand, within AO353_19165at 4203.199 kb on + strand, within AO353_19165at 4203.199 kb on + strand, within AO353_19165at 4203.200 kb on - strand, within AO353_19165at 4203.200 kb on - strand, within AO353_19165at 4203.200 kb on - strand, within AO353_19165at 4203.200 kb on - strand, within AO353_19165at 4203.462 kb on - strandat 4203.536 kb on - strandat 4203.536 kb on - strandat 4203.621 kb on + strand, within AO353_19170at 4203.621 kb on + strand, within AO353_19170at 4203.716 kb on - strand, within AO353_19170at 4203.835 kb on + strand, within AO353_19170at 4203.835 kb on + strand, within AO353_19170at 4203.835 kb on + strand, within AO353_19170at 4203.835 kb on + strand, within AO353_19170at 4203.835 kb on + strand, within AO353_19170at 4203.836 kb on - strand, within AO353_19170at 4203.836 kb on - strand, within AO353_19170at 4203.836 kb on - strand, within AO353_19170at 4203.836 kb on - strand, within AO353_19170at 4203.845 kb on + strand, within AO353_19170at 4203.845 kb on + strand, within AO353_19170at 4203.845 kb on + strand, within AO353_19170at 4203.846 kb on - strand, within AO353_19170at 4203.846 kb on - strand, within AO353_19170at 4203.846 kb on - strand, within AO353_19170at 4203.970 kb on + strand, within AO353_19170at 4203.971 kb on - strand, within AO353_19170at 4203.971 kb on - strand, within AO353_19170at 4204.055 kb on + strand, within AO353_19170at 4204.056 kb on - strand, within AO353_19170at 4204.130 kb on - strand, within AO353_19170

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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4,201,940 - +0.9
4,201,940 - +0.4
4,201,940 - +3.2
4,202,003 + AO353_19155 0.14 +0.0
4,202,003 + AO353_19155 0.14 -0.4
4,202,003 + AO353_19155 0.14 -1.1
4,202,003 + AO353_19155 0.14 +0.5
4,202,004 - AO353_19155 0.15 +1.6
4,202,004 - AO353_19155 0.15 +0.7
4,202,004 - AO353_19155 0.15 -2.3
4,202,004 - AO353_19155 0.15 -1.0
4,202,004 - AO353_19155 0.15 +0.9
4,202,051 + AO353_19155 0.27 -0.4
4,202,051 + AO353_19155 0.27 -0.1
4,202,051 + AO353_19155 0.27 +1.1
4,202,051 + AO353_19155 0.27 -1.6
4,202,051 + AO353_19155 0.27 -0.2
4,202,051 + AO353_19155 0.27 -0.6
4,202,051 + AO353_19155 0.27 +1.2
4,202,051 + AO353_19155 0.27 +1.4
4,202,052 - AO353_19155 0.27 +1.6
4,202,052 - AO353_19155 0.27 -0.3
4,202,052 - AO353_19155 0.27 -0.0
4,202,052 - AO353_19155 0.27 -0.1
4,202,052 - AO353_19155 0.27 +0.6
4,202,052 - AO353_19155 0.27 +0.5
4,202,052 - AO353_19155 0.27 +1.0
4,202,052 - AO353_19155 0.27 +1.7
4,202,052 - AO353_19155 0.27 -1.0
4,202,078 + AO353_19155 0.33 +1.2
4,202,078 + AO353_19155 0.33 -1.5
4,202,078 + AO353_19155 0.33 +1.8
4,202,078 + AO353_19155 0.33 +0.4
4,202,078 + AO353_19155 0.33 +0.3
4,202,079 - AO353_19155 0.34 -1.8
4,202,079 - AO353_19155 0.34 +1.5
4,202,079 - AO353_19155 0.34 +0.3
4,202,156 + AO353_19155 0.53 -0.9
4,202,156 + AO353_19155 0.53 -1.5
4,202,156 + AO353_19155 0.53 -1.5
4,202,156 + AO353_19155 0.53 -0.3
4,202,156 + AO353_19155 0.53 +0.4
4,202,156 + AO353_19155 0.53 -0.6
4,202,156 + AO353_19155 0.53 -2.5
4,202,156 + AO353_19155 0.53 -0.1
4,202,156 + AO353_19155 0.53 +0.1
4,202,156 + AO353_19155 0.53 -0.3
4,202,157 - AO353_19155 0.53 +0.5
4,202,157 - AO353_19155 0.53 +1.1
4,202,157 - AO353_19155 0.53 +0.0
4,202,157 - AO353_19155 0.53 -0.4
4,202,157 - AO353_19155 0.53 -1.6
4,202,157 - AO353_19155 0.53 -0.4
4,202,157 - AO353_19155 0.53 +0.9
4,202,262 + AO353_19155 0.80 -3.0
4,202,262 + AO353_19155 0.80 +0.8
4,202,262 + AO353_19155 0.80 +0.1
4,202,262 + AO353_19155 0.80 -1.5
4,202,262 + AO353_19155 0.80 -0.2
4,202,262 + AO353_19155 0.80 -0.9
4,202,262 + AO353_19155 0.80 -0.8
4,202,262 + AO353_19155 0.80 +0.7
4,202,262 + AO353_19155 0.80 -0.7
4,202,263 - AO353_19155 0.80 +0.3
4,202,263 - AO353_19155 0.80 +0.1
4,202,263 - AO353_19155 0.80 +0.8
4,202,263 - AO353_19155 0.80 -0.3
4,202,263 - AO353_19155 0.80 +0.7
4,202,263 - AO353_19155 0.80 +0.4
4,202,297 + AO353_19155 0.89 -0.4
4,202,340 - -1.1
4,202,340 - -0.8
4,202,478 + +1.3
4,202,478 + +0.3
4,202,478 + +0.1
4,202,479 - -1.6
4,202,479 - -0.5
4,202,479 - +0.4
4,202,541 - +1.1
4,202,562 + AO353_19160 0.21 -0.5
4,202,562 + AO353_19160 0.21 +0.1
4,202,584 + AO353_19160 0.26 +0.3
4,202,584 + AO353_19160 0.26 -1.5
4,202,584 + AO353_19160 0.26 -1.5
4,202,584 + AO353_19160 0.26 -2.0
4,202,584 + AO353_19160 0.26 -0.6
4,202,584 + AO353_19160 0.26 +0.1
4,202,584 + AO353_19160 0.26 -2.2
4,202,585 - AO353_19160 0.26 +1.3
4,202,585 - AO353_19160 0.26 -1.5
4,202,614 + AO353_19160 0.32 -2.1
4,202,665 - AO353_19160 0.43 -2.3
4,202,810 + AO353_19160 0.72 +1.0
4,202,811 - AO353_19160 0.73 -0.3
4,202,811 - AO353_19160 0.73 -0.8
4,202,997 + AO353_19165 0.12 +0.4
4,202,997 + AO353_19165 0.12 -0.1
4,202,997 + AO353_19165 0.12 +0.4
4,203,027 + AO353_19165 0.19 -1.0
4,203,027 + AO353_19165 0.19 +0.5
4,203,027 + AO353_19165 0.19 -0.6
4,203,028 - AO353_19165 0.19 +0.3
4,203,029 + AO353_19165 0.19 +1.4
4,203,029 + AO353_19165 0.19 +1.0
4,203,029 + AO353_19165 0.19 -0.8
4,203,029 + AO353_19165 0.19 -0.0
4,203,029 + AO353_19165 0.19 -0.4
4,203,029 + AO353_19165 0.19 -0.4
4,203,029 + AO353_19165 0.19 -0.1
4,203,029 + AO353_19165 0.19 -1.3
4,203,029 + AO353_19165 0.19 +0.7
4,203,029 + AO353_19165 0.19 +1.1
4,203,030 - AO353_19165 0.19 -0.1
4,203,060 + AO353_19165 0.26 -0.7
4,203,069 + AO353_19165 0.28 -0.4
4,203,069 + AO353_19165 0.28 -0.6
4,203,069 + AO353_19165 0.28 -1.4
4,203,069 + AO353_19165 0.28 +0.3
4,203,070 - AO353_19165 0.28 +1.7
4,203,070 - AO353_19165 0.28 -0.3
4,203,070 - AO353_19165 0.28 +2.0
4,203,088 + AO353_19165 0.32 -0.5
4,203,089 - AO353_19165 0.32 +1.1
4,203,199 + AO353_19165 0.56 -0.3
4,203,199 + AO353_19165 0.56 +0.7
4,203,199 + AO353_19165 0.56 +0.5
4,203,199 + AO353_19165 0.56 -0.9
4,203,199 + AO353_19165 0.56 +0.5
4,203,200 - AO353_19165 0.56 -0.6
4,203,200 - AO353_19165 0.56 -0.5
4,203,200 - AO353_19165 0.56 -1.3
4,203,200 - AO353_19165 0.56 -1.9
4,203,462 - -1.3
4,203,536 - -1.3
4,203,536 - -1.7
4,203,621 + AO353_19170 0.10 -0.8
4,203,621 + AO353_19170 0.10 +1.1
4,203,716 - AO353_19170 0.14 -0.5
4,203,835 + AO353_19170 0.19 +0.3
4,203,835 + AO353_19170 0.19 -0.3
4,203,835 + AO353_19170 0.19 -1.1
4,203,835 + AO353_19170 0.19 -0.3
4,203,835 + AO353_19170 0.19 -1.1
4,203,836 - AO353_19170 0.19 -1.1
4,203,836 - AO353_19170 0.19 +0.7
4,203,836 - AO353_19170 0.19 -0.6
4,203,836 - AO353_19170 0.19 -0.1
4,203,845 + AO353_19170 0.20 -0.2
4,203,845 + AO353_19170 0.20 +0.1
4,203,845 + AO353_19170 0.20 +0.3
4,203,846 - AO353_19170 0.20 -1.1
4,203,846 - AO353_19170 0.20 -0.5
4,203,846 - AO353_19170 0.20 -0.4
4,203,970 + AO353_19170 0.25 +0.8
4,203,971 - AO353_19170 0.25 +0.5
4,203,971 - AO353_19170 0.25 -0.6
4,204,055 + AO353_19170 0.29 -1.3
4,204,056 - AO353_19170 0.29 +1.7
4,204,130 - AO353_19170 0.32 -0.8

Or see this region's nucleotide sequence