Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15355

Experiment: nitrate 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_15345 and AO353_15350 overlap by 4 nucleotidesAO353_15350 and AO353_15355 are separated by 4 nucleotidesAO353_15355 and AO353_15360 are separated by 14 nucleotides AO353_15345: AO353_15345 - UDP-N-acetylmuramate--alanine ligase, at 3,390,147 to 3,391,607 _15345 AO353_15350: AO353_15350 - D-alanine--D-alanine ligase, at 3,391,604 to 3,392,572 _15350 AO353_15355: AO353_15355 - cell division protein FtsQ, at 3,392,577 to 3,393,443 _15355 AO353_15360: AO353_15360 - cell division protein FtsA, at 3,393,458 to 3,394,720 _15360 Position (kb) 3392 3393 3394Strain fitness (log2 ratio) -1 0 1at 3392.556 kb on + strandat 3392.556 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
remove
3,392,556 + -0.8
3,392,556 + +1.2

Or see this region's nucleotide sequence