Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14480

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
3,209,933	+		AO353_14475	0.61	-1.6
3,209,935	+		AO353_14475	0.61	-0.7
3,209,935	+		AO353_14475	0.61	-1.0
3,209,935	+		AO353_14475	0.61	-1.1
3,209,935	+		AO353_14475	0.61	-0.3
3,209,935	+		AO353_14475	0.61	-2.2
3,209,935	+		AO353_14475	0.61	-1.9
3,209,935	+		AO353_14475	0.61	-1.7
3,209,936	-		AO353_14475	0.61	-0.9
3,209,936	-		AO353_14475	0.61	-0.3
3,209,936	-		AO353_14475	0.61	-0.4
3,209,936	-		AO353_14475	0.61	-2.1
3,209,936	-		AO353_14475	0.61	-1.9
3,209,936	-		AO353_14475	0.61	+0.4
3,209,965	+		AO353_14475	0.62	-2.0
3,209,966	-		AO353_14475	0.62	-1.8
3,210,043	+		AO353_14475	0.66	+0.0
3,210,043	+		AO353_14475	0.66	-1.8
3,210,043	+		AO353_14475	0.66	-0.3
3,210,043	+		AO353_14475	0.66	+0.5
3,210,043	+		AO353_14475	0.66	-1.1
3,210,043	+		AO353_14475	0.66	-0.9
3,210,043	+		AO353_14475	0.66	-2.1
3,210,044	-		AO353_14475	0.66	-0.3
3,210,044	-		AO353_14475	0.66	-1.9
3,210,044	-		AO353_14475	0.66	-1.8
3,210,044	-		AO353_14475	0.66	-1.6
3,210,044	-		AO353_14475	0.66	-2.0
3,210,044	-		AO353_14475	0.66	-0.6
3,210,044	-		AO353_14475	0.66	-2.6
3,210,044	-		AO353_14475	0.66	+0.4
3,210,044	-		AO353_14475	0.66	-2.9
3,210,044	-		AO353_14475	0.66	-1.3
3,210,044	-		AO353_14475	0.66	-1.7
3,210,044	-		AO353_14475	0.66	-0.6
3,210,044	-		AO353_14475	0.66	-0.3
3,210,064	-		AO353_14475	0.66	-2.6
3,210,077	-		AO353_14475	0.67	-2.8
3,210,077	-		AO353_14475	0.67	-0.7
3,210,097	+		AO353_14475	0.68	-2.8
3,210,097	+		AO353_14475	0.68	-1.4
3,210,097	+		AO353_14475	0.68	-1.5
3,210,097	+		AO353_14475	0.68	-0.9
3,210,097	+		AO353_14475	0.68	+0.4
3,210,097	+		AO353_14475	0.68	-1.3
3,210,097	+		AO353_14475	0.68	-2.6
3,210,098	-		AO353_14475	0.68	-1.0
3,210,098	-		AO353_14475	0.68	-1.6
3,210,098	-		AO353_14475	0.68	-0.4
3,210,098	-		AO353_14475	0.68	+0.4
3,210,098	-		AO353_14475	0.68	-1.6
3,210,098	-		AO353_14475	0.68	-1.4
3,210,098	-		AO353_14475	0.68	+0.0
3,210,098	-		AO353_14475	0.68	+0.4
3,210,250	+		AO353_14475	0.74	-0.3
3,210,250	+		AO353_14475	0.74	-1.8
3,210,250	+		AO353_14475	0.74	-2.7
3,210,250	+		AO353_14475	0.74	-1.3
3,210,250	+		AO353_14475	0.74	-0.1
3,210,250	+		AO353_14475	0.74	-2.2
3,210,250	+		AO353_14475	0.74	-1.1
3,210,251	-		AO353_14475	0.74	-1.8
3,210,251	-		AO353_14475	0.74	+0.4
3,210,251	-		AO353_14475	0.74	-1.4
3,210,251	-		AO353_14475	0.74	-1.7
3,210,251	-		AO353_14475	0.74	-1.8
3,210,251	-		AO353_14475	0.74	-2.4
3,210,251	-		AO353_14475	0.74	-0.8
3,210,251	-		AO353_14475	0.74	+0.0
3,210,306	-		AO353_14475	0.77	-0.4
3,210,306	-		AO353_14475	0.77	-3.1
3,210,379	+		AO353_14475	0.80	-1.6
3,210,379	+		AO353_14475	0.80	-1.4
3,210,379	+		AO353_14475	0.80	+1.4
3,210,379	+		AO353_14475	0.80	-1.3
3,210,379	+		AO353_14475	0.80	-1.4
3,210,379	+		AO353_14475	0.80	-1.7
3,210,380	-		AO353_14475	0.80	-0.3
3,210,380	-		AO353_14475	0.80	+0.4
3,210,380	-		AO353_14475	0.80	-0.8
3,210,380	-		AO353_14475	0.80	-2.4
3,210,380	-		AO353_14475	0.80	-1.0
3,210,380	-		AO353_14475	0.80	-1.3
3,210,380	-		AO353_14475	0.80	-1.0
3,210,420	+		AO353_14475	0.82	-1.7
3,210,421	-		AO353_14475	0.82	-2.1
3,210,436	+		AO353_14475	0.82	-2.2
3,210,436	+		AO353_14475	0.82	+1.4
3,210,437	-		AO353_14475	0.82	-2.2
3,210,649	-				-2.3
3,210,666	+				-1.8
3,210,666	+				-2.3
3,210,666	+				-1.0
3,210,666	+				-1.8
3,210,666	+				-1.7
3,210,666	+				-1.8
3,210,666	+				-1.4
3,210,667	-				-1.8
3,210,667	-				-0.3
3,210,742	+				-2.2
3,210,742	+				-1.6
3,210,742	+				-2.6
3,210,742	+				+0.4
3,210,742	+				-0.9
3,210,742	+				-2.0
3,210,742	+				+0.0
3,210,743	-				-0.6
3,210,743	-				-1.3
3,210,743	-				-0.6
3,210,743	-				-2.3
3,210,841	+				-0.2
3,210,841	+				+0.6
3,210,841	+				-0.6
3,210,841	+				+1.0
3,210,842	-				+1.3
3,210,842	-				-1.9
3,210,842	-				-2.1
3,210,842	-				+0.0
3,210,842	-				-0.4
3,210,842	-				-2.3
3,210,842	-				-0.1
3,210,842	-				-1.9
3,210,874	+				-3.0
3,210,875	-				+0.0
3,210,875	-				-2.6
3,210,875	-				-2.4
3,211,010	-		AO353_14480	0.20	+0.5
3,211,010	-		AO353_14480	0.20	-1.4
3,211,080	+		AO353_14480	0.29	-3.2
3,211,081	-		AO353_14480	0.29	-0.6
3,211,178	+		AO353_14480	0.42	-1.0
3,211,178	+		AO353_14480	0.42	-0.3
3,211,178	+		AO353_14480	0.42	+0.6
3,211,178	+		AO353_14480	0.42	-2.2
3,211,178	+		AO353_14480	0.42	-1.1
3,211,178	+		AO353_14480	0.42	-2.6
3,211,178	+		AO353_14480	0.42	-0.3
3,211,178	+		AO353_14480	0.42	-1.7
3,211,178	+		AO353_14480	0.42	-1.0
3,211,178	+		AO353_14480	0.42	-0.6
3,211,179	-		AO353_14480	0.42	+2.0
3,211,179	-		AO353_14480	0.42	+0.4
3,211,179	-		AO353_14480	0.42	-0.9
3,211,179	-		AO353_14480	0.42	-1.8
3,211,179	-		AO353_14480	0.42	-0.9
3,211,179	-		AO353_14480	0.42	-1.6
3,211,179	-		AO353_14480	0.42	+2.0
3,211,179	-		AO353_14480	0.42	-2.8
3,211,179	-		AO353_14480	0.42	-1.3
3,211,179	-		AO353_14480	0.42	-1.8
3,211,219	+		AO353_14480	0.47	+0.4
3,211,219	+		AO353_14480	0.47	-0.9
3,211,220	-		AO353_14480	0.47	-0.8
3,211,223	+		AO353_14480	0.48	-0.6
3,211,223	+		AO353_14480	0.48	-1.1
3,211,223	+		AO353_14480	0.48	-1.0
3,211,223	+		AO353_14480	0.48	-1.8
3,211,223	+		AO353_14480	0.48	-0.8
3,211,223	+		AO353_14480	0.48	-0.9
3,211,223	+		AO353_14480	0.48	-1.6
3,211,223	+		AO353_14480	0.48	-1.0
3,211,223	+		AO353_14480	0.48	-1.6
3,211,223	+		AO353_14480	0.48	-0.3
3,211,223	+		AO353_14480	0.48	-1.8
3,211,223	+		AO353_14480	0.48	-2.6
3,211,223	+		AO353_14480	0.48	+2.0
3,211,223	+		AO353_14480	0.48	-1.1
3,211,224	-		AO353_14480	0.48	+0.4
3,211,224	-		AO353_14480	0.48	-0.9
3,211,224	-		AO353_14480	0.48	-1.6
3,211,224	-		AO353_14480	0.48	-1.4
3,211,224	-		AO353_14480	0.48	+0.2
3,211,224	-		AO353_14480	0.48	-2.4
3,211,224	-		AO353_14480	0.48	-1.8
3,211,224	-		AO353_14480	0.48	-0.1
3,211,224	-		AO353_14480	0.48	+2.0
3,211,224	-		AO353_14480	0.48	-0.4
3,211,224	-		AO353_14480	0.48	-0.7
3,211,224	-		AO353_14480	0.48	-1.1
3,211,224	-		AO353_14480	0.48	-2.1
3,211,224	-		AO353_14480	0.48	-1.2
3,211,224	-		AO353_14480	0.48	+0.0
3,211,224	-		AO353_14480	0.48	-0.3
3,211,224	-		AO353_14480	0.48	-1.4
3,211,224	-		AO353_14480	0.48	+0.0
3,211,224	-		AO353_14480	0.48	-1.0
3,211,224	-		AO353_14480	0.48	-0.9
3,211,421	+		AO353_14480	0.74	-0.9
3,211,422	-		AO353_14480	0.74	-2.0
3,211,878	+		AO353_14485	0.77	-0.8
3,211,878	+		AO353_14485	0.77	-0.3
3,211,973	+				-0.2
3,211,973	+				+0.3
3,211,977	+				-0.0
3,211,977	+				-0.4
3,211,977	+				-0.4
3,211,977	+				-0.7
3,211,977	+				-0.1
3,211,977	+				-1.0
3,211,978	-				+0.4
3,211,978	-				+0.1
3,211,978	-				-1.4
3,211,978	-				-0.1
3,211,978	-				-1.6
3,211,978	-				+1.0
3,211,978	-				+0.4
3,211,978	-				+1.4
3,211,978	-				-1.6
3,211,978	-				-0.2
3,211,978	-				-2.5
3,211,987	+				-1.9
3,211,987	+				-0.8
3,211,987	+				+0.4
3,211,988	-				-0.6
3,211,988	-				+0.1
3,212,075	+		AO353_14490	0.23	+0.2
3,212,075	+		AO353_14490	0.23	+1.4
3,212,076	-		AO353_14490	0.24	-0.1
3,212,076	-		AO353_14490	0.24	+0.0
3,212,076	-		AO353_14490	0.24	-1.0
3,212,076	-		AO353_14490	0.24	-1.1
3,212,076	-		AO353_14490	0.24	+1.2
3,212,176	+		AO353_14490	0.47	+0.1
3,212,328	+		AO353_14490	0.83	+0.2
3,212,328	+		AO353_14490	0.83	-0.2
3,212,328	+		AO353_14490	0.83	-0.0
3,212,328	+		AO353_14490	0.83	-0.6
3,212,328	+		AO353_14490	0.83	-0.1
3,212,328	+		AO353_14490	0.83	-0.3
3,212,328	+		AO353_14490	0.83	+1.4
3,212,328	+		AO353_14490	0.83	-0.3
3,212,328	+		AO353_14490	0.83	-1.0
3,212,329	-		AO353_14490	0.83	-1.3
3,212,329	-		AO353_14490	0.83	-1.1
3,212,329	-		AO353_14490	0.83	-0.2
3,212,329	-		AO353_14490	0.83	+0.6
3,212,329	-		AO353_14490	0.83	+0.7
3,212,329	-		AO353_14490	0.83	-0.1
3,212,329	-		AO353_14490	0.83	-0.1
3,212,329	-		AO353_14490	0.83	-2.6
3,212,329	-		AO353_14490	0.83	-0.5
3,212,433	+				-1.0
3,212,433	+				-1.1
3,212,449	+				-0.5
3,212,450	-				-0.2
3,212,479	+				-0.7
3,212,479	+				-1.2
3,212,479	+				-0.5
3,212,479	+				-1.2
3,212,479	+				-0.8
3,212,479	+				-1.7
3,212,480	-				-0.7
3,212,480	-				-0.1
3,212,480	-				-1.7
3,212,480	-				-1.1
3,212,489	-				-0.2
3,212,489	-				-1.8
3,212,547	+				+0.5
3,212,611	+				+0.0
3,212,611	+				-0.6
3,212,611	+				+0.4
3,212,611	+				+1.1
3,212,611	+				-0.2
3,212,611	+				+1.4
3,212,611	+				+0.8
3,212,612	-				+2.9
3,212,612	-				+2.1